diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index 112e7ab168be..debed1535b41 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,20 +1,24 @@ PORTNAME= pysam DISTVERSION= 0.19.1 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +PATCH_SITES= https://github.com/pysam-developers/pysam/commit/ +PATCHFILES= 064c8024395a15024fd590bd90f55f918e15545f.patch:-p1 # backport of symbols failure fix for arm and risc + MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading, manipulating and writing genomic data sets LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING # see https://github.com/pysam-developers/pysam/issues/1121 for below failures BROKEN_aarch64= conflicting symbol (libchtslib libcsamtools ...) : $d.6 BROKEN_riscv6= conflicting symbol (libchtslib libcsamtools ...): .Lline_table_start0 USES= gmake python:3.6-3.9 USE_PYTHON= autoplist distutils cython cython_run .include diff --git a/biology/py-pysam/distinfo b/biology/py-pysam/distinfo index b0745a6421bb..e92952ac8d70 100644 --- a/biology/py-pysam/distinfo +++ b/biology/py-pysam/distinfo @@ -1,3 +1,5 @@ -TIMESTAMP = 1653951817 +TIMESTAMP = 1658245018 SHA256 (pysam-0.19.1.tar.gz) = dee403cbdf232170c1e11cc24c76e7dd748fc672ad38eb0414f3b9d569b1448f SIZE (pysam-0.19.1.tar.gz) = 3857553 +SHA256 (064c8024395a15024fd590bd90f55f918e15545f.patch) = e4655d70d0debe00f7937b9b3f18318acbcb8ae832165542c1531233320c6df7 +SIZE (064c8024395a15024fd590bd90f55f918e15545f.patch) = 1237