diff --git a/biology/bamtools/Makefile b/biology/bamtools/Makefile index 8ba4a4d667ec..775c1f88cb59 100644 --- a/biology/bamtools/Makefile +++ b/biology/bamtools/Makefile @@ -1,22 +1,23 @@ PORTNAME= bamtools DISTVERSIONPREFIX= v -DISTVERSION= 2.5.2 -PORTREVISION= 2 +DISTVERSION= 2.5.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= API and toolkit for handling BAM files WWW= https://github.com/pezmaster31/bamtools LICENSE= MIT LIB_DEPENDS+= libjsoncpp.so:devel/jsoncpp USES= cmake USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= pezmaster31 CMAKE_ON+= BUILD_SHARED_LIBS +PLIST_SUB= PORTVERSION=${PORTVERSION} + .include diff --git a/biology/bamtools/distinfo b/biology/bamtools/distinfo index e36197452212..dd64a579b51b 100644 --- a/biology/bamtools/distinfo +++ b/biology/bamtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1625529459 -SHA256 (pezmaster31-bamtools-v2.5.2_GH0.tar.gz) = 4d8b84bd07b673d0ed41031348f10ca98dd6fa6a4460f9b9668d6f1d4084dfc8 -SIZE (pezmaster31-bamtools-v2.5.2_GH0.tar.gz) = 245729 +TIMESTAMP = 1747676701 +SHA256 (pezmaster31-bamtools-v2.5.3_GH0.tar.gz) = 7d4e59bac7c03bde488fe43e533692f78b5325a097328785ec31373ffac08344 +SIZE (pezmaster31-bamtools-v2.5.3_GH0.tar.gz) = 245648 diff --git a/biology/bamtools/pkg-descr b/biology/bamtools/pkg-descr index 632f635d85bd..e5116b7fbba8 100644 --- a/biology/bamtools/pkg-descr +++ b/biology/bamtools/pkg-descr @@ -1,7 +1,6 @@ BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. - BAM is the binary alternative to the sequence alignment/map (SAM) format used for storing genetic sequence data. It uses BGZF block compression implemented on top of the standard gzip file format to provide good compression while allowing efficient random access for indexed queries. diff --git a/biology/bamtools/pkg-plist b/biology/bamtools/pkg-plist index a976799fd806..df5a98027cbe 100644 --- a/biology/bamtools/pkg-plist +++ b/biology/bamtools/pkg-plist @@ -1,25 +1,25 @@ bin/bamtools include/bamtools/api/BamAlgorithms.h include/bamtools/api/BamAlignment.h include/bamtools/api/BamAux.h include/bamtools/api/BamConstants.h include/bamtools/api/BamIndex.h include/bamtools/api/BamMultiReader.h include/bamtools/api/BamReader.h include/bamtools/api/BamWriter.h include/bamtools/api/IBamIODevice.h include/bamtools/api/SamConstants.h include/bamtools/api/SamHeader.h include/bamtools/api/SamProgram.h include/bamtools/api/SamProgramChain.h include/bamtools/api/SamReadGroup.h include/bamtools/api/SamReadGroupDictionary.h include/bamtools/api/SamSequence.h include/bamtools/api/SamSequenceDictionary.h include/bamtools/api/algorithms/Sort.h include/bamtools/api/api_global.h include/bamtools/api/bamtools_api_export.h include/bamtools/shared/bamtools_global.h lib/libbamtools.so -lib/libbamtools.so.2.5.2 +lib/libbamtools.so.%%PORTVERSION%% libdata/pkgconfig/bamtools-1.pc