diff --git a/misc/snakemake/Makefile b/misc/snakemake/Makefile index 6dbc8d393315..aea1ee03db7b 100644 --- a/misc/snakemake/Makefile +++ b/misc/snakemake/Makefile @@ -1,59 +1,60 @@ PORTNAME= snakemake -DISTVERSION= 9.19.0 +DISTVERSION= 9.20.0 CATEGORIES= misc python MASTER_SITES= PYPI MAINTAINER= yuri@FreeBSD.org COMMENT= Workflow management system WWW= https://github.com/snakemake/snakemake LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}conda-inject>=1.3.1:devel/py-conda-inject@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}conda-inject>=1.3.1:devel/py-conda-inject@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}configargparse>0:devel/py-configargparse@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}connection_pool>=0.0.3:devel/py-connection_pool@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dpath>=2.1.6:devel/py-dpath@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gitpython>0:devel/py-gitpython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}humanfriendly>0:textproc/py-humanfriendly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}immutables>0:devel/py-immutables@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=24.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PuLP>=2.3.1:math/py-PuLP@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}referencing>0:devel/py-referencing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.8.1:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}smart-open>=4.0:net/py-smart-open@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-common>=1.20.1:misc/py-snakemake-interface-common@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-executor-plugins>=9.3.2:misc/py-snakemake-interface-executor-plugins@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-logger-plugins>=1.1.0:misc/py-snakemake-interface-logger-plugins@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-report-plugins>=1.2.0:misc/py-snakemake-interface-report-plugins@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-scheduler-plugins>=2.0.0:misc/py-snakemake-interface-scheduler-plugins@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}snakemake-interface-storage-plugins>=4.4.1:misc/py-snakemake-interface-storage-plugins@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlmodel>=0.0.37:databases/py-sqlmodel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tenacity>=9.1.4:devel/py-tenacity@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}throttler>0:devel/py-throttler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yte>=1.5.5:textproc/py-yte@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= python USE_PYTHON= distutils noflavors autoplist TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests do-test: @cd ${WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m pytest \ tests/test_args.py tests/test_internals.py tests/test_io.py \ tests/test_prefix_lookup.py -v NO_ARCH= yes +# tests as of 9.20.0: 20 passed in 2.94s + .include diff --git a/misc/snakemake/distinfo b/misc/snakemake/distinfo index 0c5d5b4b1d1c..4cdbfb11f626 100644 --- a/misc/snakemake/distinfo +++ b/misc/snakemake/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1776616620 -SHA256 (snakemake-9.19.0.tar.gz) = c7d3fbbf00b1bdf992bc61b9dcee21b5c3fb95a038cd58d53c6369a7c4f0609e -SIZE (snakemake-9.19.0.tar.gz) = 6779935 +TIMESTAMP = 1777842670 +SHA256 (snakemake-9.20.0.tar.gz) = 66ff407f4d0a471588bc35778ae1b0d3bd91ec94024f4317bdc3a0af68b9407c +SIZE (snakemake-9.20.0.tar.gz) = 6785429