diff --git a/biology/libsedml/Makefile b/biology/libsedml/Makefile index bceaf3feae24..48e6414a0b18 100644 --- a/biology/libsedml/Makefile +++ b/biology/libsedml/Makefile @@ -1,34 +1,33 @@ PORTNAME= libsedml DISTVERSIONPREFIX= v -DISTVERSION= 2.0.30 -PORTREVISION= 1 +DISTVERSION= 2.0.31 CATEGORIES= biology devel MAINTAINER= yuri@FreeBSD.org COMMENT= C++ SED-ML library LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= libsbml>0:biology/libsbml \ libnuml>0:biology/libnuml # statically linked, even into a shared library, see https://github.com/fbergmann/libSEDML/issues/155 RUN_DEPENDS= libsbml>0:biology/libsbml \ libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency USES= cmake compiler:c++11-lang gnome USE_GNOME= libxml2 USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= fbergmann GH_PROJECT= libSEDML post-install: # no need to install LICENSE, README, VERSION @${RM} -r ${STAGEDIR}${DATADIR} # workaround for https://github.com/fbergmann/libSEDML/issues/163 ${RM} -r ${STAGEDIR}${PREFIX}/share/cmake # the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155 .include diff --git a/biology/libsedml/distinfo b/biology/libsedml/distinfo index d62e98919a4f..4d24f547b8d9 100644 --- a/biology/libsedml/distinfo +++ b/biology/libsedml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1649357439 -SHA256 (fbergmann-libSEDML-v2.0.30_GH0.tar.gz) = ba0111f7cc991ecc460f68e85182da75d62937522c9259c76e79a917e0fb9c24 -SIZE (fbergmann-libSEDML-v2.0.30_GH0.tar.gz) = 964155 +TIMESTAMP = 1650649359 +SHA256 (fbergmann-libSEDML-v2.0.31_GH0.tar.gz) = f61954df7ead556eced3d8559e58fd01c9bb89766196aedbd1518ec640ed2a06 +SIZE (fbergmann-libSEDML-v2.0.31_GH0.tar.gz) = 965714 diff --git a/biology/libsedml/pkg-plist b/biology/libsedml/pkg-plist index e69adcbc474f..aad387e7c70c 100644 --- a/biology/libsedml/pkg-plist +++ b/biology/libsedml/pkg-plist @@ -1,117 +1,117 @@ include/sedml/SedAbstractCurve.h include/sedml/SedAbstractTask.h include/sedml/SedAddXML.h include/sedml/SedAdjustableParameter.h include/sedml/SedAlgorithm.h include/sedml/SedAlgorithmParameter.h include/sedml/SedAnalysis.h include/sedml/SedAppliedDimension.h include/sedml/SedAxis.h include/sedml/SedBase.h include/sedml/SedBounds.h include/sedml/SedChange.h include/sedml/SedChangeAttribute.h include/sedml/SedChangeXML.h include/sedml/SedComputeChange.h include/sedml/SedConstructorException.h include/sedml/SedCurve.h include/sedml/SedDataDescription.h include/sedml/SedDataGenerator.h include/sedml/SedDataRange.h include/sedml/SedDataSet.h include/sedml/SedDataSource.h include/sedml/SedDocument.h include/sedml/SedElementFilter.h include/sedml/SedError.h include/sedml/SedErrorLog.h include/sedml/SedErrorTable.h include/sedml/SedExperimentReference.h include/sedml/SedFigure.h include/sedml/SedFill.h include/sedml/SedFitExperiment.h include/sedml/SedFitMapping.h include/sedml/SedFunctionalRange.h include/sedml/SedLeastSquareObjectiveFunction.h include/sedml/SedLine.h include/sedml/SedListOf.h include/sedml/SedListOfAdjustableParameters.h include/sedml/SedListOfAlgorithmParameters.h include/sedml/SedListOfAppliedDimensions.h include/sedml/SedListOfChanges.h include/sedml/SedListOfCurves.h include/sedml/SedListOfDataDescriptions.h include/sedml/SedListOfDataGenerators.h include/sedml/SedListOfDataSets.h include/sedml/SedListOfDataSources.h include/sedml/SedListOfExperimentReferences.h include/sedml/SedListOfFitExperiments.h include/sedml/SedListOfFitMappings.h include/sedml/SedListOfModels.h include/sedml/SedListOfOutputs.h include/sedml/SedListOfParameters.h include/sedml/SedListOfRanges.h include/sedml/SedListOfSetValues.h include/sedml/SedListOfSimulations.h include/sedml/SedListOfSlices.h include/sedml/SedListOfStyles.h include/sedml/SedListOfSubPlots.h include/sedml/SedListOfSubTasks.h include/sedml/SedListOfSurfaces.h include/sedml/SedListOfTasks.h include/sedml/SedListOfVariables.h include/sedml/SedMarker.h include/sedml/SedModel.h include/sedml/SedNamespaces.h include/sedml/SedObjective.h include/sedml/SedOneStep.h include/sedml/SedOutput.h include/sedml/SedParameter.h include/sedml/SedParameterEstimationReport.h include/sedml/SedParameterEstimationResultPlot.h include/sedml/SedParameterEstimationTask.h include/sedml/SedPlot.h include/sedml/SedPlot2D.h include/sedml/SedPlot3D.h include/sedml/SedRange.h include/sedml/SedReader.h include/sedml/SedRemoveXML.h include/sedml/SedRepeatedTask.h include/sedml/SedReport.h include/sedml/SedSetValue.h include/sedml/SedShadedArea.h include/sedml/SedSimulation.h include/sedml/SedSlice.h include/sedml/SedSteadyState.h include/sedml/SedStyle.h include/sedml/SedSubPlot.h include/sedml/SedSubTask.h include/sedml/SedSurface.h include/sedml/SedTask.h include/sedml/SedTypeCodes.h include/sedml/SedTypes.h include/sedml/SedUniformRange.h include/sedml/SedUniformTimeCourse.h include/sedml/SedVariable.h include/sedml/SedVectorRange.h include/sedml/SedVisitor.h include/sedml/SedWaterfallPlot.h include/sedml/SedWriter.h include/sedml/common/SedOperationReturnValues.h include/sedml/common/SedmlEnumerations.h include/sedml/common/common.h include/sedml/common/extern.h include/sedml/common/libsedml-config-common.h include/sedml/common/libsedml-config.h include/sedml/common/libsedml-namespace.h include/sedml/common/libsedml-version.h include/sedml/common/sedmlfwd.h lib/cmake/sedml-config-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/sedml-config-version.cmake lib/cmake/sedml-config.cmake lib/cmake/sedml-static-config-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/sedml-static-config-version.cmake lib/cmake/sedml-static-config.cmake lib/libsedml-static.a lib/libsedml.so lib/libsedml.so.2 -lib/libsedml.so.2.0.30 +lib/libsedml.so.2.0.31 diff --git a/biology/py-libsedml/Makefile b/biology/py-libsedml/Makefile index 3e9fb3054914..ecaeea646dd1 100644 --- a/biology/py-libsedml/Makefile +++ b/biology/py-libsedml/Makefile @@ -1,34 +1,34 @@ PORTNAME= libsedml DISTVERSIONPREFIX= v -DISTVERSION= 2.0.30 +DISTVERSION= 2.0.31 CATEGORIES= biology devel PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= SED-ML library for Python LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/../../../LICENSE.txt BUILD_DEPENDS= swig:devel/swig LIB_DEPENDS= libsedml.so:biology/libsedml \ libsbml.so:biology/libsbml \ libnuml.so:biology/libnuml USES= cmake localbase:ldflags python USE_PYTHON= flavors USE_GITHUB= yes GH_ACCOUNT= fbergmann GH_PROJECT= libSEDML CMAKE_ARGS= -DCMAKE_INSTALL_LIBDIR=lib LDFLAGS+= -lsedml -lsbml -lnuml # otherwise it builds a broken shared object, see https://github.com/NuML/NuML/issues/21 WRKSRC_SUBDIR= src/bindings/python do-test: install @${PYTHON_CMD} ${FILESDIR}/quick-test.py .include diff --git a/biology/py-libsedml/distinfo b/biology/py-libsedml/distinfo index 302c22c31f7f..cba8cfb9203f 100644 --- a/biology/py-libsedml/distinfo +++ b/biology/py-libsedml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1649357873 -SHA256 (fbergmann-libSEDML-v2.0.30_GH0.tar.gz) = ba0111f7cc991ecc460f68e85182da75d62937522c9259c76e79a917e0fb9c24 -SIZE (fbergmann-libSEDML-v2.0.30_GH0.tar.gz) = 964155 +TIMESTAMP = 1650649576 +SHA256 (fbergmann-libSEDML-v2.0.31_GH0.tar.gz) = f61954df7ead556eced3d8559e58fd01c9bb89766196aedbd1518ec640ed2a06 +SIZE (fbergmann-libSEDML-v2.0.31_GH0.tar.gz) = 965714