diff --git a/science/phonopy/Makefile b/science/phonopy/Makefile
index 15241ef5732b..87062e5bc90e 100644
--- a/science/phonopy/Makefile
+++ b/science/phonopy/Makefile
@@ -1,26 +1,26 @@
 PORTNAME=	phonopy
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2.41.2
+DISTVERSION=	2.42.0
 CATEGORIES=	science python
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package for phonon calculations at harmonic and quasi-harmonic levels
 WWW=		https://phonopy.github.io/phonopy/ \
 		https://github.com/phonopy/phonopy
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 USES=		cmake
 USE_LDCONFIG=	yes
 
 USE_GITHUB=	yes
 
 CMAKE_ON=	PHONOPY PHONOPY_LIBS BUILD_SHARED_LIBS
 
 PLIST_FILES=	include/phonopy.h \
 		lib/libphonopy_libs.so \
 		lib/libphonopy_libs.so.1 \
 		lib/libphonopy_libs.so.${DISTVERSION}
 
 .include <bsd.port.mk>
diff --git a/science/phonopy/distinfo b/science/phonopy/distinfo
index 242c3100549a..7a515ee74037 100644
--- a/science/phonopy/distinfo
+++ b/science/phonopy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1752739755
-SHA256 (phonopy-phonopy-v2.41.2_GH0.tar.gz) = e78053c18dc6550bab6533b78704162c8d5bf0207ffcf3d61d636c0a4f9cbb33
-SIZE (phonopy-phonopy-v2.41.2_GH0.tar.gz) = 7717842
+TIMESTAMP = 1753085727
+SHA256 (phonopy-phonopy-v2.42.0_GH0.tar.gz) = db7efd4acb881114a9679a8f6730f127c196090d82077009746325ad2bc53041
+SIZE (phonopy-phonopy-v2.42.0_GH0.tar.gz) = 7718436
diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile
index 43101eaa6ecd..b298e416ecf5 100644
--- a/science/py-phonopy/Makefile
+++ b/science/py-phonopy/Makefile
@@ -1,41 +1,41 @@
 PORTNAME=	phonopy
-DISTVERSION=	2.41.2
+DISTVERSION=	2.42.0
 CATEGORIES=	science python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package for phonon calculations at harmonic and quasi-harmonic levels
 WWW=		https://phonopy.github.io/phonopy/ \
 		https://github.com/phonopy/phonopy
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	cmake:devel/cmake-core \
 		${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \
 		${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \
 		${PY_SETUPTOOLS} \
 		${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR}
 RUN_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.2:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}spglib>=2.3:science/py-spglib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}symfc>=1.1.6:science/py-symfc@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}hiphive>0:science/py-hiphive@${PY_FLAVOR}
 
 USES=		python
 USE_PYTHON=	pep517 cython autoplist pytest
 
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 TEST_WRKSRC=	${WRKSRC}/test
 
 post-install:
 	@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/phonopy/_phonopy${PYTHON_TAG}.so
 
 # tests as of 2.41.2: 6 failed, 159 passed, 5 skipped, 21 warnings, 130 errors in 502.46s (0:08:22) (failures are likely in science/py-symfc with -9999 error)
 
 .include <bsd.port.mk>
diff --git a/science/py-phonopy/distinfo b/science/py-phonopy/distinfo
index 740077509ed3..fa7a9f63de51 100644
--- a/science/py-phonopy/distinfo
+++ b/science/py-phonopy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1752739793
-SHA256 (phonopy-2.41.2.tar.gz) = 850f1c298c1013c641ecbc94cd181cef3261b213655859d4bd88038ee442b232
-SIZE (phonopy-2.41.2.tar.gz) = 4713884
+TIMESTAMP = 1753085744
+SHA256 (phonopy-2.42.0.tar.gz) = f157afabc461d6b86c3ff09b139534890ca365ac4fd468cad1a0d0e9233776ce
+SIZE (phonopy-2.42.0.tar.gz) = 4715307