diff --git a/misc/py-torch-geometric/Makefile b/misc/py-torch-geometric/Makefile
index 834004f590ba..dddf13a62a11 100644
--- a/misc/py-torch-geometric/Makefile
+++ b/misc/py-torch-geometric/Makefile
@@ -1,32 +1,40 @@
 PORTNAME=	torch-geometric
-DISTVERSION=	2.5.2
+DISTVERSION=	2.5.3
 CATEGORIES=	misc python # machine-learning
-MASTER_SITES=	PYPI
+#MASTER_SITES=	PYPI # no tests
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 DISTNAME=	${PORTNAME:S/-/_/}-${PORTVERSION}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Graph neural network library for PyTorch
 WWW=		https://pyg.org/
 
 LICENSE=	MIT
 
-PY_DEPENDS=	${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \
+BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}dgl>0:math/py-dgl@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}fsspec>0:devel/py-fsspec@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \
 		${PYNUMPY}  \
 		${PYTHON_PKGNAMEPREFIX}psutil>=5.8.0:sysutils/py-psutil@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR}
-BUILD_DEPENDS=	${PY_DEPENDS} \
-		${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
-RUN_DEPENDS=	${PY_DEPENDS}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR}
+#TEST_DEPENDS additionally needs misc/py-torch-sparse, misc/py-pyg_lib, math/py-faiss, etc. for some skipped tests
 
 USES=		python
 USE_PYTHON=	pep517 autoplist pytest
 
+USE_GITHUB=	yes
+GH_ACCOUNT=	pyg-team
+GH_PROJECT=	pytorch_geometric
+
 NO_ARCH=	yes
 
 .include <bsd.port.mk>
diff --git a/misc/py-torch-geometric/distinfo b/misc/py-torch-geometric/distinfo
index 066df1b61ba3..8b54e8a8ffc5 100644
--- a/misc/py-torch-geometric/distinfo
+++ b/misc/py-torch-geometric/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1711008257
-SHA256 (torch_geometric-2.5.2.tar.gz) = 92059e98cf0334f264606c013df838d4411f461c3871e6b64723b5c40f6dec59
-SIZE (torch_geometric-2.5.2.tar.gz) = 740864
+TIMESTAMP = 1713636649
+SHA256 (pyg-team-pytorch_geometric-2.5.3_GH0.tar.gz) = d63da28498c32911d42798e972e4c627faef0c1afe362fefef74d8287f1f6330
+SIZE (pyg-team-pytorch_geometric-2.5.3_GH0.tar.gz) = 3796898