diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile index cff4fc5927b8..060606a82ba0 100644 --- a/biology/ruby-bio/Makefile +++ b/biology/ruby-bio/Makefile @@ -1,54 +1,51 @@ # Created by: Akinori MUSHA aka knu # $FreeBSD$ PORTNAME= bio -PORTVERSION= 1.5.0 +PORTVERSION= 1.5.1 CATEGORIES= biology ruby MASTER_SITES= http://bioruby.org/archive/ PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX} DISTNAME= ${PORTNAME}ruby-${PORTVERSION} DIST_SUBDIR= ruby MAINTAINER= mauricio@arareko.net COMMENT= Integrated environment for Bioinformatics written in Ruby LICENSE= GPLv2 RUBY LICENSE_COMB= dual -BROKEN_RUBY22= yes -BROKEN_RUBY23= yes - OPTIONS_DEFINE= XMLPARSER BDB4 MYSQL PGSQL DOCS XMLPARSER_DESC= xmlparser support for faster Blast processing BDB4_DESC= bdb4 support for faster flat file indexing NO_ARCH= yes USES= shebangfix USE_RUBY= yes USE_RUBY_SETUP= yes SHEBANG_FILES= sample/biofetch.rb ruby_OLD_CMD= /usr/proj/bioruby/bin/ruby XMLPARSER_RUN_DEPENDS= ${RUBY_SITEARCHLIBDIR}/xmlparser.so:textproc/ruby-xmlparser BDB4_RUN_DEPENDS= ${RUBY_SITEARCHLIBDIR}/bdb.so:databases/ruby-bdb MYSQL_RUN_DEPENDS= rubygem-dbd-mysql>=0:databases/rubygem-dbd-mysql PGSQL_RUN_DEPENDS= rubygem-dbd-pg>=0:databases/rubygem-dbd-pg post-patch: ${RUBY} -i -pe 'gsub(%r"(/etc/bioinformatics/)") { "${PREFIX}" + $$1 }' \ ${WRKSRC}/doc/Tutorial.rd \ ${WRKSRC}/lib/bio/io/registry.rb do-install: @${MKDIR} ${STAGEDIR}${PREFIX}/etc/bioinformatics .for f in etc/bioinformatics/seqdatabase.ini ${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${f}.sample .endfor @${MKDIR} ${STAGEDIR}${RUBY_MODEXAMPLESDIR} ${CP} -R ${WRKSRC}/sample/ ${STAGEDIR}${RUBY_MODEXAMPLESDIR}/ @${MKDIR} ${STAGEDIR}${RUBY_MODDOCDIR}/ja ${INSTALL_DATA} ${WRKSRC}/ChangeLog ${WRKSRC}/README.rdoc ${STAGEDIR}${RUBY_MODDOCDIR}/ ${INSTALL_DATA} ${WRKSRC}/doc/*.rd ${STAGEDIR}${RUBY_MODDOCDIR}/ ${INSTALL_DATA} ${WRKSRC}/doc/*.rd.ja ${STAGEDIR}${RUBY_MODDOCDIR}/ja/ .include diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo index 0c477906ffcd..ef3511b3e0be 100644 --- a/biology/ruby-bio/distinfo +++ b/biology/ruby-bio/distinfo @@ -1,2 +1,3 @@ -SHA256 (ruby/bioruby-1.5.0.tar.gz) = b920dd27374d5f9443986f4184bfc34d79a54d927b16a8ce23caf1ce116f7026 -SIZE (ruby/bioruby-1.5.0.tar.gz) = 1475866 +TIMESTAMP = 1494171635 +SHA256 (ruby/bioruby-1.5.1.tar.gz) = 872435a811f2a02000c9a5a5da5ba91c33e4a221ab8b243a69bf737df9bfb75a +SIZE (ruby/bioruby-1.5.1.tar.gz) = 1478155