diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 69c6e8bbe9db..3c75d8a9a618 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,52 +1,54 @@ PORTNAME= ncbi-cxx-toolkit DISTVERSIONPREFIX= release/ DISTVERSION= 29.7.0 CATEGORIES= biology science devel MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI C++ Toolkit WWW= https://ncbi.github.io/cxx-toolkit/ \ https://github.com/ncbi/ncbi-cxx-toolkit-public LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE -BROKEN_i386= compilation fails: Only 64-bit Intel and ARM architectures are supported (in src/util/compress/zlib_cloudflare/deflate.c:149) +# uses intrincs for CRC computation, probably easy to port if desired +ONLY_FOR_ARCHS= aarch64 amd64 +ONLY_FOR_ARCHS_REASON= deflate.c:149:2: error: "Only 64-bit Intel and ARM architectures are supported" LIB_DEPENDS= libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre \ libunwind.so:devel/libunwind \ libzstd.so:archivers/zstd RUN_DEPENDS= bash:shells/bash USES= compiler:c++17-lang gmake mysql perl5 python shebangfix ssl xorg USE_XORG= x11 xpm USE_GITHUB= yes GH_ACCOUNT= ncbi GH_PROJECT= ${PORTNAME}-public SHEBANG_FILES= src/app/blast/get_species_taxids.sh SHEBANG_GLOB= *.pl *.py GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-debug --with-dll --without-static \ --without-vdb CONFLICTS_INSTALL= dakota libxdiff ncbi-blast+ ncbi-toolkit proj \ py*-speedtest-cli # bin/blast_formatter bin/speedtest bin/test_regexp lib/libeutils.so lib/libproj.so lib/libxdiff.so post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} # remove the conflicting files @${RM} \ ${STAGEDIR}${PREFIX}/lib/libcdd.so \ ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ ${FIND} * -type f -or -type l >> ${TMPPLIST} .include