diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index 745a4a165ed1..eedd8dd559bc 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,35 +1,37 @@ PORTNAME= pysam DISTVERSIONPREFIX= v -DISTVERSION= 0.22.1 +DISTVERSION= 0.23.0 CATEGORIES= biology python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading, manipulating and writing genomic data sets WWW= https://github.com/pysam-developers/pysam LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhts.so:biology/htslib RUN_DEPENDS= bcftools:biology/bcftools \ samtools:biology/samtools USES= gmake python USE_PYTHON= distutils autoplist cython cython_run pytest # 2 failed, 155 errors, see https://github.com/pysam-developers/pysam/issues/1284 USE_GITHUB= yes GH_ACCOUNT= pysam-developers BINARY_ALIAS= make=${GMAKE} MAKE_ENV= HTSLIB_MODE=external \ HTSLIB_LIBRARY_DIR=${LOCALBASE}/lib \ HTSLIB_INCLUDE_DIR=${LOCALBASE}/include TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so +# tests as of 0.23.0: 958 passed, 13 skipped, 1 warning in 502.60s (0:08:22) + .include diff --git a/biology/py-pysam/distinfo b/biology/py-pysam/distinfo index f5f1e4268139..fc2dc1ebfa8a 100644 --- a/biology/py-pysam/distinfo +++ b/biology/py-pysam/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1714015094 -SHA256 (pysam-developers-pysam-v0.22.1_GH0.tar.gz) = e4981524d7627c53fa0d3f8cbec2bd65c2ea7520092f25e1029af12cb7b82ff6 -SIZE (pysam-developers-pysam-v0.22.1_GH0.tar.gz) = 3885851 +TIMESTAMP = 1738831884 +SHA256 (pysam-developers-pysam-v0.23.0_GH0.tar.gz) = b2a2b66c7e9f6c0b765ba421f46e33d74bfdd797c51ae3020f16c788dd621b0a +SIZE (pysam-developers-pysam-v0.23.0_GH0.tar.gz) = 4076476