diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index d50bb3ccd733..5d0d40274f5a 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,40 +1,40 @@ PORTNAME= pysces -DISTVERSION= 1.2.1 +DISTVERSION= 1.2.2 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Simulator for Cellular Systems WWW= https://pysces.github.io/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ ${PYNUMPY} PY_EXTRA= ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PY_EXTRA} USES= fortran localbase:ldflags python USE_PYTHON= pep517 autoplist pytest LDFLAGS+= -lpython${PYTHON_VER} BINARY_ALIAS= python3=${PYTHON_CMD} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/pitcon/pitcon.cpython-${PYTHON_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/nleq2/nleq2.cpython-${PYTHON_SUFFIX}.so do-test: # from section 2.1 Loading PySCeS in http://pysces.sourceforge.net/pdf/userguide.pdf @${SETENV} ${TEST_ENV} ${PYTHON_CMD} -c "import pysces; pysces.test();" .include diff --git a/biology/py-PySCeS/distinfo b/biology/py-PySCeS/distinfo index 2d91e6fed642..88232acfde21 100644 --- a/biology/py-PySCeS/distinfo +++ b/biology/py-PySCeS/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1716746850 -SHA256 (pysces-1.2.1.tar.gz) = 5dbde64cf398c599f5303d9ce084a50e047080c0899951529774a822a549fc20 -SIZE (pysces-1.2.1.tar.gz) = 2753986 +TIMESTAMP = 1722664974 +SHA256 (pysces-1.2.2.tar.gz) = 8d71e330594d63281ed88de9925776497f57c0952092d2a87df0c031cb6c8101 +SIZE (pysces-1.2.2.tar.gz) = 2754765 diff --git a/biology/py-PySCeS/files/patch-pyproject.toml b/biology/py-PySCeS/files/patch-pyproject.toml index 334fd0cf97b2..5416c3ea1171 100644 --- a/biology/py-PySCeS/files/patch-pyproject.toml +++ b/biology/py-PySCeS/files/patch-pyproject.toml @@ -1,12 +1,12 @@ ---- pyproject.toml.orig 2024-04-05 22:51:04 UTC +--- pyproject.toml.orig 2024-08-02 13:17:23 UTC +++ pyproject.toml @@ -3,8 +3,7 @@ requires = [ requires = [ 'meson-python', 'meson>=1.2.3', - 'ninja', -- 'numpy>=1.26.0,<1.27', +- 'numpy>=2.0.0', + 'numpy', ] [tool.meson-python.args]