diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index 56909c85ee5e..bccb0f21ac85 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,39 +1,40 @@ PORTNAME= PySCeS -DISTVERSION= 1.1.0 +DISTVERSION= 1.1.1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Simulator for Cellular Systems -WWW= http://pysces.sourceforge.net/ +WWW= https://pysces.sourceforge.net/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENCE.txt PY_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} PY_EXTRA= ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ cmake:devel/cmake-core \ ${PY_DEPENDS} -RUN_DEPENDS= ${PY_DEPENDS} ${PY_EXTRA} +RUN_DEPENDS= ${PY_DEPENDS} \ + ${PY_EXTRA} USES= fortran python -USE_PYTHON= distutils autoplist +USE_PYTHON= distutils autoplist pytest LDFLAGS+= -lpython${PYTHON_VER} -shared # see https://github.com/PySCeS/pysces/issues/29 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/pitcon/pitcon.cpython-${PYTHON_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/nleq2/nleq2.cpython-${PYTHON_SUFFIX}.so do-test: # from section 2.1 Loading PySCeS in http://pysces.sourceforge.net/pdf/userguide.pdf @${SETENV} ${TEST_ENV} ${PYTHON_CMD} -c "import pysces; pysces.test();" .include diff --git a/biology/py-PySCeS/distinfo b/biology/py-PySCeS/distinfo index cad49023bd9b..070c6e317ddf 100644 --- a/biology/py-PySCeS/distinfo +++ b/biology/py-PySCeS/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1687744975 -SHA256 (pysces-1.1.0.tar.gz) = 0ef576ff646d720d73a4ca5dd1d12e7de1e99a83f81e714a6c0bfbb02953bd54 -SIZE (pysces-1.1.0.tar.gz) = 1036079 +TIMESTAMP = 1690346893 +SHA256 (pysces-1.1.1.tar.gz) = 170f9ccdcd3ff0336d144f3891c54ee5dfb9b61b1e7129f48e96ff02d6c9b6e5 +SIZE (pysces-1.1.1.tar.gz) = 1036708