diff --git a/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp new file mode 100644 index 000000000000..64f24cecd4cc --- /dev/null +++ b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp @@ -0,0 +1,14 @@ +--- src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.orig 2019-07-10 10:11:51.713901000 -0500 ++++ src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp 2019-07-10 10:15:40.994964000 -0500 +@@ -137,8 +137,10 @@ CSeqDBPerfApp::x_ScanDatabase() + } + LOG_POST(Info << "Will go over " << oids2iterate.size() << " sequences"); + ++ // kScanUncompressed is read only and initialized before threading ++ // so shared should be fine here + #pragma omp parallel default(none) num_threads(m_DbHandles.size()) \ +- shared(oids2iterate) if(m_DbHandles.size() > 1) ++ shared(oids2iterate,kScanUncompressed) if(m_DbHandles.size() > 1) + { + int thread_id = 0; + #ifdef _OPENMP