diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 4148f33e2d63..49d024208177 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,48 +1,50 @@ PORTNAME= ncbi-cxx-toolkit DISTVERSION= 25_0_0 CATEGORIES= biology science devel MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Aug_18_2021/ DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE +BROKEN_FreeBSD_11= libxconnserv.so, not found (try using -rpath or -rpath-link) + LIB_DEPENDS= libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg USE_XORG= x11 xpm SHEBANG_FILES= src/app/blast/get_species_taxids.sh SHEBANG_GLOB= *.pl *.py GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-debug --with-dll --without-static \ --without-vdb WRKSRC= ${WRKDIR}/public-${DISTVERSION:S/_/./g}-2021-08-18-11-21-29 post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} # remove an empty directory #@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg @${RMDIR} \ ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \ ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms # remove the conflicting file @${RM} \ ${STAGEDIR}${PREFIX}/lib/libcdd.so \ ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ ${FIND} * -type f -or -type l >> ${TMPPLIST} .include