diff --git a/science/py-rmf/Makefile b/science/py-rmf/Makefile index a63cc0f540a2..90e7727526bb 100644 --- a/science/py-rmf/Makefile +++ b/science/py-rmf/Makefile @@ -1,37 +1,37 @@ PORTNAME= rmf -DISTVERSION= 1.4.1 +DISTVERSION= 1.5.0 CATEGORIES= science graphics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library to support reading and writing of Rich Molecular Format files WWW= https://integrativemodeling.org/rmf/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= swig:devel/swig LIB_DEPENDS= libRMF.so:science/rmf USES= cmake compiler:c++11-lang python:3.6+ shebangfix USE_PYTHON= flavors USE_GITHUB= yes GH_ACCOUNT= salilab SHEBANG_GLOB= *.py CMAKE_ARGS= -DCMAKE_INSTALL_PYTHONDIR:STRING=${PYTHON_SITELIBDIR} LDFLAGS+= -lRMF BINARY_ALIAS= python=${PYTHON_CMD} do-test: # one testcase fails: https://github.com/salilab/rmf/issues/126 @${RM} ${WRKSRC}/test/*.cpp @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DFREEBSD_BUILS_WITH_TESTS:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include diff --git a/science/py-rmf/distinfo b/science/py-rmf/distinfo index 134a53e2b2cb..3a48aeec4a6a 100644 --- a/science/py-rmf/distinfo +++ b/science/py-rmf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1672026376 -SHA256 (salilab-rmf-1.4.1_GH0.tar.gz) = 8ab3a0b13466ecf41e9e42b759c9935d740ceb4698490648a27501b9b27adda0 -SIZE (salilab-rmf-1.4.1_GH0.tar.gz) = 15092168 +TIMESTAMP = 1679626701 +SHA256 (salilab-rmf-1.5.0_GH0.tar.gz) = cc53760f207faf3523e3ab75d81e41228f28916d7935298fb59455f006f3669a +SIZE (salilab-rmf-1.5.0_GH0.tar.gz) = 15101103 diff --git a/science/rmf/Makefile b/science/rmf/Makefile index e254488dc27b..9106fb80f4af 100644 --- a/science/rmf/Makefile +++ b/science/rmf/Makefile @@ -1,36 +1,35 @@ PORTNAME= rmf -DISTVERSION= 1.4.1 -PORTREVISION= 1 +DISTVERSION= 1.5.0 CATEGORIES= science graphics MAINTAINER= yuri@FreeBSD.org COMMENT= Library to support reading and writing of Rich Molecular Format files WWW= https://integrativemodeling.org/rmf/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ libsz.so:science/libaec USES= compiler:c++17-lang cmake:testing python:build shebangfix USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= salilab SHEBANG_GLOB= *.py LDFLAGS+= -lhdf5 BINARY_ALIAS= python=${PYTHON_CMD} do-test: @${RM} ${WRKSRC}/test/*.py @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DFREEBSD_BUILS_WITH_TESTS:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include diff --git a/science/rmf/distinfo b/science/rmf/distinfo index c23e5eed2f4b..aca16c0485d8 100644 --- a/science/rmf/distinfo +++ b/science/rmf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1672024587 -SHA256 (salilab-rmf-1.4.1_GH0.tar.gz) = 8ab3a0b13466ecf41e9e42b759c9935d740ceb4698490648a27501b9b27adda0 -SIZE (salilab-rmf-1.4.1_GH0.tar.gz) = 15092168 +TIMESTAMP = 1679626152 +SHA256 (salilab-rmf-1.5.0_GH0.tar.gz) = cc53760f207faf3523e3ab75d81e41228f28916d7935298fb59455f006f3669a +SIZE (salilab-rmf-1.5.0_GH0.tar.gz) = 15101103 diff --git a/science/rmf/pkg-plist b/science/rmf/pkg-plist index 32c189d9b72c..63f255feac7e 100644 --- a/science/rmf/pkg-plist +++ b/science/rmf/pkg-plist @@ -1,101 +1,102 @@ bin/rmf3_dump bin/rmf_cat bin/rmf_frames bin/rmf_info bin/rmf_interpolate bin/rmf_pdb bin/rmf_show bin/rmf_signature bin/rmf_slice bin/rmf_transform bin/rmf_update bin/rmf_validate bin/rmf_xml include/RMF.h include/RMF/BufferConstHandle.h include/RMF/BufferHandle.h include/RMF/CoordinateTransformer.h include/RMF/Decorator.h include/RMF/Enum.h include/RMF/FileConstHandle.h include/RMF/FileHandle.h include/RMF/HDF5.h include/RMF/HDF5/ConstAttributes.h include/RMF/HDF5/ConstDataSetD.h include/RMF/HDF5/ConstFile.h include/RMF/HDF5/ConstGroup.h include/RMF/HDF5/DataSetAccessPropertiesD.h include/RMF/HDF5/DataSetCreationPropertiesD.h include/RMF/HDF5/DataSetD.h include/RMF/HDF5/DataSetIndexD.h include/RMF/HDF5/File.h include/RMF/HDF5/Group.h include/RMF/HDF5/MutableAttributes.h include/RMF/HDF5/Object.h include/RMF/HDF5/handle.h include/RMF/HDF5/infrastructure_macros.h include/RMF/HDF5/internal/types.h include/RMF/HDF5/types.h include/RMF/ID.h include/RMF/Label.h include/RMF/NodeConstHandle.h include/RMF/NodeHandle.h include/RMF/Nullable.h include/RMF/RestoreCurrentFrame.h include/RMF/SetCurrentFrame.h include/RMF/TraverseHelper.h include/RMF/Vector.h include/RMF/compiler_macros.h include/RMF/config.h include/RMF/constants.h include/RMF/decorator/alias.h include/RMF/decorator/alternatives.h include/RMF/decorator/bond.h include/RMF/decorator/external.h include/RMF/decorator/feature.h include/RMF/decorator/labels.h include/RMF/decorator/physics.h include/RMF/decorator/provenance.h include/RMF/decorator/publication.h include/RMF/decorator/reference.h include/RMF/decorator/representation.h include/RMF/decorator/sequence.h include/RMF/decorator/shape.h include/RMF/decorator/uncertainty.h include/RMF/decorators.h include/RMF/enums.h include/RMF/exceptions.h include/RMF/info.h include/RMF/infrastructure_macros.h include/RMF/internal/SharedData.h include/RMF/internal/SharedDataCategory.h include/RMF/internal/SharedDataData.h include/RMF/internal/SharedDataData_impl.h include/RMF/internal/SharedDataFile.h include/RMF/internal/SharedDataFrames.h include/RMF/internal/SharedDataHierarchy.h include/RMF/internal/SharedDataKeys.h include/RMF/internal/SharedDataUserData.h include/RMF/internal/SharedData_impl.h include/RMF/internal/Transform.h include/RMF/internal/errors.h include/RMF/internal/hash.h include/RMF/internal/irange.h include/RMF/internal/large_set_map.h include/RMF/internal/paths.h include/RMF/internal/shared_data_factories.h include/RMF/internal/shared_data_ranges.h include/RMF/internal/small_set_map.h include/RMF/internal/swig_helpers.h include/RMF/internal/use.h include/RMF/keys.h include/RMF/log.h include/RMF/names.h +include/RMF/numpy_util.h include/RMF/show_hierarchy.h include/RMF/signature.h include/RMF/traits.h include/RMF/types.h include/RMF/utility.h include/RMF/validate.h lib/libRMF.so -lib/libRMF.so.1.4 +lib/libRMF.so.1.5