diff --git a/biology/metaeuk/Makefile b/biology/metaeuk/Makefile index 4799c0202787..0281783cad7a 100644 --- a/biology/metaeuk/Makefile +++ b/biology/metaeuk/Makefile @@ -1,49 +1,46 @@ PORTNAME= metaeuk -DISTVERSION= 6 -DISTVERSIONSUFFIX= -a5d39d9 -PORTREVISION= 2 +DISTVERSION= 7 +DISTVERSIONSUFFIX= -bba0d80 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Gene discovery and annotation for large-scale eukaryotic metagenomics WWW= https://github.com/soedinglab/metaeuk LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENCE.md NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc # 32-bit platforms produce wrong results based on https://github.com/soedinglab/metaeuk/issues/85#issuecomment-1888379107 NOT_FOR_ARCHS+= powerpc64 # many modules produce wrong results on big-endian architectures BROKEN_powerpc64le= clang crashes, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=276268 BUILD_DEPENDS= xxd:editors/vim TEST_DEPENDS= bash:shells/bash USES= cmake perl5 shebangfix USE_PERL5= build USE_GITHUB= yes GH_ACCOUNT= soedinglab -GH_TUPLE= soedinglab:metaeuk-regression:6404519:metaeuk_regression/tests \ - soedinglab:MMseqs2-Regression:f69b185:MMseqs2_Regression/lib/mmseqs/util/regression +GH_TUPLE= soedinglab:metaeuk-regression:f7c3999:metaeuk_regression/tests \ + soedinglab:MMseqs2-Regression:5e3bc17:MMseqs2_Regression/lib/mmseqs/util/regression SHEBANG_GLOB= *.sh PLIST_FILES= bin/metaeuk -OPTIONS_DEFINE= NATIVE - -NATIVE_CMAKE_BOOL= NATIVE_ARCH +CMAKE_OFF= NATIVE_ARCH .include .if !exists(/usr/include/omp.h) || ${ARCH} == powerpc64le # https://github.com/soedinglab/metaeuk/issues/85, https://github.com/llvm/llvm-project/issues/63807 CMAKE_ARGS+= -DREQUIRE_OPENMP:BOOL=OFF post-patch: # workaround for https://github.com/soedinglab/metaeuk/issues/55 @${REINPLACE_CMD} -e 's|set(REQUIRE_OPENMP 1 |set(REQUIRE_OPENMP 0 |' ${WRKSRC}/lib/mmseqs/src/CMakeLists.txt .endif do-test: @cd ${WRKSRC}/tests && ./run.sh ${STAGEDIR}${PREFIX}/bin/metaeuk .include diff --git a/biology/metaeuk/distinfo b/biology/metaeuk/distinfo index cb642b65977d..3aa2029fb5e3 100644 --- a/biology/metaeuk/distinfo +++ b/biology/metaeuk/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1669423980 -SHA256 (soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz) = be19c26f5bdb7dcdd7bc48172105afecf19e5a2e5555edb3ba0c4aa0e4aac126 -SIZE (soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz) = 13145257 -SHA256 (soedinglab-metaeuk-regression-6404519_GH0.tar.gz) = 5ac6c7438dc23374de5304564020e13ee7a6af99e60495083d74a5a272719b4d -SIZE (soedinglab-metaeuk-regression-6404519_GH0.tar.gz) = 6719192 -SHA256 (soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz) = 3774e16182cf8ce33d83c8c5170a57ebcec1ba137318d4762a89fd25c2890e78 -SIZE (soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz) = 27714150 +TIMESTAMP = 1717132294 +SHA256 (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 45eff3cb8e15626b1142d4717bf43a6e7a1308bc8a6eb1718c70d33d613898fa +SIZE (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 13342465 +SHA256 (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 4724516451e7d9d977c4d2edc04ab86188d5e0326f00fbc6e208df241ac0b1b3 +SIZE (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 6720389 +SHA256 (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 415a7e81821c5add73c8c3b450acbd316d7244d151a306864ff3c260b115b7be +SIZE (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 27715323