diff --git a/cad/cura/Makefile b/cad/cura/Makefile
index 6703d3fc799a..dc79be61e337 100644
--- a/cad/cura/Makefile
+++ b/cad/cura/Makefile
@@ -1,61 +1,64 @@
 PORTNAME=	Cura
 DISTVERSION=	5.7.0
-PORTREVISION=	1
+PORTREVISION=	2
 PORTEPOCH=	2
 CATEGORIES=	cad
 DIST_SUBDIR=	Ultimaker
 
 MAINTAINER=	db@FreeBSD.org
 COMMENT=	Slicing application for 3D printers
 WWW=		https://github.com/Ultimaker/Cura/wiki
 
 LICENSE=	AGPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
+DEPRECATED=	Depends on expiring devel/py-trimesh
+EXPIRATION_DATE=2026-09-15
+
 BUILD_DEPENDS=	Uranium>0,1:cad/uranium
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}zeroconf>0:net/py-zeroconf@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyserial>0:comms/py-pyserial@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}shapely>0:devel/py-shapely@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}numpy-stl>0:math/py-numpy-stl@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}keyring>0:security/py-keyring@${PY_FLAVOR} \
 		Uranium>=${DISTVERSION}:cad/uranium \
 		libCharon>=5.0.0:net/libcharon \
 		CuraEngine>=${DISTVERSION}:cad/cura-engine \
 		fdm_materials>=${DISTVERSION}:cad/fdm_materials \
 		${PYTHON_PKGNAMEPREFIX}trimesh>0:devel/py-trimesh@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pynest2d>=5.3.0:devel/py-pynest2d@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sentry-sdk>0:devel/py-sentry-sdk@${PY_FLAVOR} \
 		libArcus>=5.3.0:net/libarcus \
 		libSavitar>=5.3.0:devel/libsavitar
 LIB_DEPENDS=	libArcus.so:net/libarcus \
 		libSavitar.so:devel/libsavitar
 
 USES=		cmake gettext shebangfix python pyqt:6 \
 		desktop-file-utils shared-mime-info
 USE_PYQT=	pyqt6
 CMAKE_ARGS+=	-DURANIUM_DIR:STRING="${LOCALBASE}/share/uranium" \
 		-DCURA_VERSION:STRING=${DISTVERSION}
 USE_GITHUB=	yes
 GH_ACCOUNT=	Ultimaker
 NO_ARCH=	yes
 SHEBANG_FILES=	cura_app.py
 
 #pre-configure:
 #	${REINPLACE_CMD} -e 's|%%DISTVERSION%%|${DISTVERSION}|' \
 #		${WRKSRC}/CMakeLists.txt
 #
 #post-patch:
 #	${REINPLACE_CMD} -e 's|%%PYTHON_CMD%%|${PYTHON_CMD}|' \
 #		${WRKSRC}/cura_app.py
 
 post-extract:
 	@${MKDIR} ${WRKSRC}/cmake
 	@for f in CuraPluginInstall.cmake CuraTests.cmake mod_bundled_packages_json.py; do \
 		${CP} ${FILESDIR}/$$f ${WRKSRC}/cmake; \
 		done
 	@for f in CMakeLists.txt com.ultimaker.cura.desktop.in com.ultimaker.cura.appdata.xml; do \
 		${CP} ${FILESDIR}/$$f ${WRKSRC}; \
 		done
 	@${CP} ${FILESDIR}/CuraVersion.py.in ${WRKSRC}/cura
 
 .include <bsd.port.mk>
diff --git a/devel/py-trimesh/Makefile b/devel/py-trimesh/Makefile
index 7c2a04dd7229..ee8a8741e209 100644
--- a/devel/py-trimesh/Makefile
+++ b/devel/py-trimesh/Makefile
@@ -1,45 +1,48 @@
 PORTNAME=	trimesh
 PORTVERSION=	3.5.25
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	devel cad python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	db@FreeBSD.org
 COMMENT=	Library for loading and using triangular meshes
 WWW=		https://pypi.org/project/trimesh/\#description
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE.md
 
+DEPRECATED=	Depends on expiring math/py-python-fcl
+EXPIRATION_DATE=2026-09-15
+
 # This order of dependancies directly lifted from setup.py please do not change!
 NEEDED_DEPENDS=	${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyglet1>0:graphics/py-pyglet1@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}shapely>0:devel/py-shapely@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}rtree>0:devel/py-rtree@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}svg_path>0:graphics/py-svg.path@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pillow>=7.0.0:graphics/py-pillow@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}xxhash>0:devel/py-xxhash@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pycollada>0:graphics/py-pycollada@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}chardet>0:textproc/py-chardet@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}colorlog>0:devel/py-colorlog@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}triangle>0:math/py-triangle@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}python-fcl>0:math/py-python-fcl@${PY_FLAVOR}
 BUILD_DEPENDS=	${NEEDED_DEPENDS}
 RUN_DEPENDS=	${NEEDED_DEPENDS}
 
 USES=		compiler:c++11-lang python
 
 USE_PYTHON=	distutils autoplist concurrent
 
 NO_ARCH=	yes
 
 .include <bsd.port.mk>
diff --git a/games/unknown-horizons/Makefile b/games/unknown-horizons/Makefile
index 303e7e3192d8..a5ea5fb9c036 100644
--- a/games/unknown-horizons/Makefile
+++ b/games/unknown-horizons/Makefile
@@ -1,44 +1,47 @@
 PORTNAME=	unknown-horizons
 PORTVERSION=	2019.1
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	games
 
 MAINTAINER=	fiziologus@gmail.com
 COMMENT=	Real time simulation game
 WWW=		https://www.unknown-horizons.org/
 
 LICENSE=	GPLv2+
 LICENSE_FILE=	${WRKSRC}/doc/licenses/GPL
 
+DEPRECATED=	Depends on expiring net/py-pyenet (ENET option)
+EXPIRATION_DATE=2026-09-15
+
 BUILD_DEPENDS=	${PY_PILLOW} \
 		${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR}
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}fife>0:games/py-fife@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR}
 
 USES=		gettext-tools gnome python shebangfix
 USE_GITHUB=	yes
 USE_GNOME=	intltool
 USE_PYTHON=	autoplist distutils noflavors
 SHEBANG_FILES=	run_uh.py
 NO_ARCH=	yes
 
 OPTIONS_DEFINE=		ENET NLS
 OPTIONS_DEFAULT=	ENET
 
 ENET_DESC=		Multipliplayer support through pyenet
 ENET_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pyenet>0:net/py-pyenet@${PY_FLAVOR}
 
 post-patch-ENET-off:
 	@${REINPLACE_CMD} -e 's|import enet|return None|' ${WRKSRC}/horizons/network/__init__.py
 
 post-patch-NLS-off:
 	@${REINPLACE_CMD} -e '/build.sub_commands.append.*build_i18n/ d' ${WRKSRC}/setup.py
 
 do-build:
 	cd ${WRKSRC} && ${SETENV} UH_USER_DIR=${WRKSRC} ${PYTHON_CMD} horizons/engine/generate_atlases.py 2048
 
 post-install-NLS-off:
 	@${RM} -r ${STAGEDIR}${PREFIX}/share/locale
 
 .include <bsd.port.mk>
diff --git a/misc/py-torch-geometric/Makefile b/misc/py-torch-geometric/Makefile
index c30e9b132a44..8237ada43930 100644
--- a/misc/py-torch-geometric/Makefile
+++ b/misc/py-torch-geometric/Makefile
@@ -1,56 +1,60 @@
 PORTNAME=	torch-geometric
 DISTVERSION=	2.8.0
+PORTREVISION=	1
 CATEGORIES=	misc python # machine-learning
 #MASTER_SITES=	PYPI # no tests
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 DISTNAME=	${PORTNAME:S/-/_/}-${PORTVERSION}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Graph neural network library for PyTorch
 WWW=		https://pyg.org/ \
 		https://pytorch-geometric.readthedocs.io/en/latest/ \
 		https://github.com/pyg-team/pytorch_geometric
 
 LICENSE=	MIT
 
+DEPRECATED=	Depends on expiring math/py-dgl
+EXPIRATION_DATE=2026-09-15
+
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}dgl>0:math/py-dgl@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR}  \
 		${PYTHON_PKGNAMEPREFIX}psutil>=5.8.0:sysutils/py-psutil@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}xxhash>0:devel/py-xxhash@${PY_FLAVOR}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}faiss>0:math/py-faiss@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}huggingface-hub>0:misc/py-huggingface-hub@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytorch-lightning>0:misc/py-pytorch-lightning@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}torchmetrics>0:misc/py-torchmetrics@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}wandb>0:misc/py-wandb@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}yacs>0:devel/py-yacs@${PY_FLAVOR}
 #TEST_DEPENDS additionally needs misc/py-torch-sparse, misc/py-pyg_lib, etc. for some skipped tests
 
 USES=		python
 USE_PYTHON=	pep517 autoplist pytest # 27 tests fail, see https://github.com/pyg-team/pytorch_geometric/issues/9660
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	pyg-team
 GH_PROJECT=	pytorch_geometric
 
 NO_ARCH=	yes
 
 # tests as of version 2.6.1: 17 failed, 5452 passed, 986 skipped, 12 warnings in 330.89s (0:05:30)
 
 .include <bsd.port.mk>
diff --git a/net/py-pytradfri/Makefile b/net/py-pytradfri/Makefile
index 693f4e1d9f84..de568325a0ba 100644
--- a/net/py-pytradfri/Makefile
+++ b/net/py-pytradfri/Makefile
@@ -1,21 +1,24 @@
 PORTNAME=	pytradfri
 DISTVERSION=	13.0.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	net
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Python IKEA Tradfri API controller
 WWW=		https://github.com/ggravlingen/pytradfri
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
+DEPRECATED=	Depends on expirign net/py-DTLSSocket
+EXPIRATION_DATE=2026-09-15
+
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}aiocoap>=0:net/py-aiocoap@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}DTLSSocket>=0:net/py-DTLSSocket@${PY_FLAVOR}
 
 USES=		python
 USE_PYTHON=	autoplist distutils
 
 .include <bsd.port.mk>
diff --git a/science/py-chempy/Makefile b/science/py-chempy/Makefile
index 88f254afd589..5508ae6ebb7f 100644
--- a/science/py-chempy/Makefile
+++ b/science/py-chempy/Makefile
@@ -1,54 +1,57 @@
 PORTNAME=	chempy
 DISTVERSION=	0.10.1
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science python # chemistry
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package useful for solving problems in chemistry
 WWW=		https://github.com/bjodah/chempy
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
+DEPRECATED=	Depends on expiring math/py-pygslodeiv2 (EXTRAS option)
+EXPIRATION_DATE=2026-09-15
+
 PY_DEPENDS=	${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.3:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}PuLP>=1.6.8:math/py-PuLP@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyneqsys>=0.5.7:math/py-pyneqsys@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyodesys>=0.14.1:math/py-pyodesys@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyparsing>=2.0.3:devel/py-pyparsing@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}quantities>=0.12.1:science/py-quantities@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=1.0.1:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sym>=0.3.7:math/py-sym@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR}
 BUILD_DEPENDS=	${PY_DEPENDS}
 RUN_DEPENDS=	${PY_DEPENDS}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-flakes>0:devel/py-pytest-flakes@${PY_FLAVOR} \
 		gsl>0:math/gsl
 
 USES=		localbase:ldflags python # localbase and math/gsl are only for tests
 USE_PYTHON=	distutils autoplist pytest # 5 tests fail, see https://github.com/bjodah/chempy/issues/222
 
 NO_ARCH=	yes
 
 CONFLICTS_INSTALL=	${PYTHON_PKGNAMEPREFIX}pymol # https://github.com/schrodinger/pymol-open-source/issues/100
 
 OPTIONS_DEFINE=		EXTRAS
 OPTIONS_DEFAULT=	EXTRAS
 
 EXTRAS_DESC=		Install optional dependencies for additional functionality # this seems to be a copy of what extras pyodesys requires, see https://github.com/bjodah/chempy/issues/241
 EXTRAS_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}bokeh>=0.13.0:www/py-bokeh@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.3:devel/py-pycodeexport@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.12:devel/py-pycompilation@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.4:math/py-pygslodeiv2@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.4:math/py-pyodeint@${PY_FLAVOR}
 			# TODO pycvodes>=0.14.0, pykinsol>=0.1.6
 
 .include <bsd.port.mk>