diff --git a/devel/kokkos/Makefile b/devel/kokkos/Makefile index f3d82dbd1e8f..8bb9eff41a4a 100644 --- a/devel/kokkos/Makefile +++ b/devel/kokkos/Makefile @@ -1,38 +1,37 @@ PORTNAME= kokkos -DISTVERSION= 3.6.01 -PORTREVISION= 1 +DISTVERSION= 3.7.00 CATEGORIES= devel MAINTAINER= yuri@FreeBSD.org COMMENT= C++ performance portability programming ecosystem WWW= https://github.com/kokkos/kokkos LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc # Kokkos assumes a 64-bit build; i.e., 8-byte pointers, but found 4-byte pointers instead RUN_DEPENDS= bash:shells/bash USES= cmake:testing compiler:c++11-lang shebangfix USE_GITHUB= yes USE_LDCONFIG= yes SHEBANG_FILES= bin/nvcc_wrapper bin/kokkos_launch_compiler CMAKE_ON= BUILD_SHARED_LIBS CMAKE_TESTING_ON= Kokkos_ENABLE_TESTS # 5 tests fail, see https://github.com/kokkos/kokkos/issues/5400 LDFLAGS+= -lexecinfo OPTIONS_DEFINE= OPENMP SERIAL OPTIONS_DEFAULT= OPENMP SERIAL # both choices are assumed by science/nlcglib OPENMP_CMAKE_BOOL= Kokkos_ENABLE_OPENMP SERIAL_DESC= Enable serial backend SERIAL_CMAKE_BOOL= Kokkos_ENABLE_SERIAL post-install: # workaround for https://github.com/kokkos/kokkos/issues/4983 ${RM} ${STAGEDIR}${PREFIX}/include/CMakeLists.txt .include diff --git a/devel/kokkos/distinfo b/devel/kokkos/distinfo index 201b79f3d8fe..32086cec0074 100644 --- a/devel/kokkos/distinfo +++ b/devel/kokkos/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1655937695 -SHA256 (kokkos-kokkos-3.6.01_GH0.tar.gz) = 1b80a70c5d641da9fefbbb652e857d7c7a76a0ebad1f477c253853e209deb8db -SIZE (kokkos-kokkos-3.6.01_GH0.tar.gz) = 2247443 +TIMESTAMP = 1663811257 +SHA256 (kokkos-kokkos-3.7.00_GH0.tar.gz) = 62e3f9f51c798998f6493ed36463f66e49723966286ef70a9dcba329b8443040 +SIZE (kokkos-kokkos-3.7.00_GH0.tar.gz) = 2301343 diff --git a/devel/kokkos/pkg-plist b/devel/kokkos/pkg-plist index d3ac42024f81..1b00bc5116b7 100644 --- a/devel/kokkos/pkg-plist +++ b/devel/kokkos/pkg-plist @@ -1,365 +1,480 @@ bin/hpcbind bin/kokkos_launch_compiler bin/nvcc_wrapper include/Cuda/Kokkos_Cuda_Alloc.hpp include/Cuda/Kokkos_Cuda_Atomic_Intrinsics.hpp include/Cuda/Kokkos_Cuda_Atomic_Intrinsics_Restore_Builtins.hpp include/Cuda/Kokkos_Cuda_BlockSize_Deduction.hpp include/Cuda/Kokkos_Cuda_Error.hpp include/Cuda/Kokkos_Cuda_GraphNodeKernel.hpp include/Cuda/Kokkos_Cuda_GraphNode_Impl.hpp include/Cuda/Kokkos_Cuda_Graph_Impl.hpp include/Cuda/Kokkos_Cuda_Half_Conversion.hpp include/Cuda/Kokkos_Cuda_Half_Impl_Type.hpp include/Cuda/Kokkos_Cuda_Instance.hpp include/Cuda/Kokkos_Cuda_KernelLaunch.hpp include/Cuda/Kokkos_Cuda_Locks.hpp include/Cuda/Kokkos_Cuda_MDRangePolicy.hpp -include/Cuda/Kokkos_Cuda_Parallel.hpp +include/Cuda/Kokkos_Cuda_Parallel_MDRange.hpp +include/Cuda/Kokkos_Cuda_Parallel_Range.hpp +include/Cuda/Kokkos_Cuda_Parallel_Team.hpp include/Cuda/Kokkos_Cuda_ReduceScan.hpp include/Cuda/Kokkos_Cuda_Task.hpp include/Cuda/Kokkos_Cuda_Team.hpp include/Cuda/Kokkos_Cuda_UniqueToken.hpp include/Cuda/Kokkos_Cuda_Vectorization.hpp include/Cuda/Kokkos_Cuda_View.hpp include/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp include/Cuda/Kokkos_Cuda_abort.hpp include/HIP/Kokkos_HIP_Abort.hpp include/HIP/Kokkos_HIP_Atomic.hpp include/HIP/Kokkos_HIP_BlockSize_Deduction.hpp include/HIP/Kokkos_HIP_Error.hpp include/HIP/Kokkos_HIP_Half_Conversion.hpp include/HIP/Kokkos_HIP_Half_Impl_Type.hpp include/HIP/Kokkos_HIP_Instance.hpp include/HIP/Kokkos_HIP_KernelLaunch.hpp include/HIP/Kokkos_HIP_Locks.hpp include/HIP/Kokkos_HIP_MDRangePolicy.hpp include/HIP/Kokkos_HIP_Parallel_MDRange.hpp include/HIP/Kokkos_HIP_Parallel_Range.hpp include/HIP/Kokkos_HIP_Parallel_Team.hpp include/HIP/Kokkos_HIP_ReduceScan.hpp include/HIP/Kokkos_HIP_Shuffle_Reduce.hpp include/HIP/Kokkos_HIP_Team.hpp include/HIP/Kokkos_HIP_UniqueToken.hpp include/HIP/Kokkos_HIP_Vectorization.hpp include/HIP/Kokkos_HIP_WorkGraphPolicy.hpp include/HPX/Kokkos_HPX_Task.hpp include/HPX/Kokkos_HPX_WorkGraphPolicy.hpp include/KokkosCore_Config_DeclareBackend.hpp include/KokkosCore_Config_FwdBackend.hpp include/KokkosCore_Config_PostInclude.hpp include/KokkosCore_Config_SetupBackend.hpp include/KokkosCore_config.h include/KokkosExp_InterOp.hpp include/KokkosExp_MDRangePolicy.hpp include/Kokkos_AcquireUniqueTokenImpl.hpp include/Kokkos_AnonymousSpace.hpp include/Kokkos_Array.hpp include/Kokkos_Atomic.hpp include/Kokkos_Atomics_Desul_Config.hpp include/Kokkos_Atomics_Desul_Volatile_Wrapper.hpp include/Kokkos_Atomics_Desul_Wrapper.hpp include/Kokkos_Bitset.hpp include/Kokkos_Complex.hpp include/Kokkos_Concepts.hpp include/Kokkos_CopyViews.hpp include/Kokkos_Core.hpp include/Kokkos_Core_fwd.hpp include/Kokkos_Crs.hpp include/Kokkos_Cuda.hpp include/Kokkos_CudaSpace.hpp include/Kokkos_DetectionIdiom.hpp include/Kokkos_DualView.hpp include/Kokkos_DynRankView.hpp include/Kokkos_DynamicView.hpp include/Kokkos_ErrorReporter.hpp include/Kokkos_ExecPolicy.hpp include/Kokkos_Extents.hpp include/Kokkos_Functional.hpp include/Kokkos_Future.hpp include/Kokkos_Graph.hpp include/Kokkos_GraphNode.hpp include/Kokkos_Graph_fwd.hpp include/Kokkos_HBWSpace.hpp include/Kokkos_HIP.hpp include/Kokkos_HIP_Space.hpp include/Kokkos_HPX.hpp include/Kokkos_Half.hpp include/Kokkos_HostSpace.hpp include/Kokkos_Layout.hpp include/Kokkos_LogicalSpaces.hpp include/Kokkos_Macros.hpp include/Kokkos_MasterLock.hpp include/Kokkos_MathematicalConstants.hpp include/Kokkos_MathematicalFunctions.hpp include/Kokkos_MathematicalSpecialFunctions.hpp include/Kokkos_MemoryPool.hpp include/Kokkos_MemoryTraits.hpp include/Kokkos_MinMaxClamp.hpp include/Kokkos_NumericTraits.hpp include/Kokkos_OffsetView.hpp include/Kokkos_OpenMP.hpp include/Kokkos_OpenMPTarget.hpp include/Kokkos_OpenMPTargetSpace.hpp include/Kokkos_Pair.hpp include/Kokkos_Parallel.hpp include/Kokkos_Parallel_Reduce.hpp include/Kokkos_PointerOwnership.hpp include/Kokkos_Profiling_ProfileSection.hpp include/Kokkos_Random.hpp include/Kokkos_Rank.hpp include/Kokkos_SYCL.hpp include/Kokkos_SYCL_Space.hpp include/Kokkos_ScatterView.hpp include/Kokkos_ScratchSpace.hpp include/Kokkos_Serial.hpp include/Kokkos_Sort.hpp include/Kokkos_StaticCrsGraph.hpp include/Kokkos_StdAlgorithms.hpp include/Kokkos_TaskPolicy.hpp include/Kokkos_TaskScheduler.hpp include/Kokkos_TaskScheduler_fwd.hpp include/Kokkos_Threads.hpp include/Kokkos_Timer.hpp include/Kokkos_Tuners.hpp include/Kokkos_UniqueToken.hpp include/Kokkos_UnorderedMap.hpp include/Kokkos_Vector.hpp include/Kokkos_Vectorization.hpp include/Kokkos_View.hpp include/Kokkos_WorkGraphPolicy.hpp include/Kokkos_hwloc.hpp -include/OpenMP/Kokkos_OpenMP_Exec.hpp +include/OpenACC/Kokkos_OpenACC.hpp +include/OpenACC/Kokkos_OpenACCSpace.hpp +include/OpenACC/Kokkos_OpenACC_Instance.hpp +include/OpenACC/Kokkos_OpenACC_Traits.hpp +include/OpenMP/Kokkos_OpenMP_Instance.hpp include/OpenMP/Kokkos_OpenMP_Parallel.hpp include/OpenMP/Kokkos_OpenMP_Task.hpp include/OpenMP/Kokkos_OpenMP_Team.hpp include/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Abort.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Error.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Exec.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Instance.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel_MDRange.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_Task.hpp include/OpenMPTarget/Kokkos_OpenMPTarget_UniqueToken.hpp include/SYCL/Kokkos_SYCL_Abort.hpp include/SYCL/Kokkos_SYCL_DeepCopy.hpp include/SYCL/Kokkos_SYCL_Half_Conversion.hpp include/SYCL/Kokkos_SYCL_Half_Impl_Type.hpp include/SYCL/Kokkos_SYCL_Instance.hpp include/SYCL/Kokkos_SYCL_MDRangePolicy.hpp include/SYCL/Kokkos_SYCL_Parallel_Range.hpp include/SYCL/Kokkos_SYCL_Parallel_Reduce.hpp include/SYCL/Kokkos_SYCL_Parallel_Scan.hpp include/SYCL/Kokkos_SYCL_Parallel_Team.hpp include/SYCL/Kokkos_SYCL_Team.hpp include/SYCL/Kokkos_SYCL_UniqueToken.hpp +include/Serial/Kokkos_Serial_Parallel_MDRange.hpp +include/Serial/Kokkos_Serial_Parallel_Range.hpp +include/Serial/Kokkos_Serial_Parallel_Team.hpp +include/Serial/Kokkos_Serial_Task.hpp +include/Serial/Kokkos_Serial_UniqueToken.hpp +include/Serial/Kokkos_Serial_WorkGraphPolicy.hpp include/Threads/Kokkos_ThreadsExec.hpp include/Threads/Kokkos_ThreadsTeam.hpp -include/Threads/Kokkos_Threads_Parallel.hpp +include/Threads/Kokkos_Threads_Parallel_MDRange.hpp +include/Threads/Kokkos_Threads_Parallel_Range.hpp +include/Threads/Kokkos_Threads_Parallel_Team.hpp +include/Threads/Kokkos_Threads_UniqueToken.hpp include/Threads/Kokkos_Threads_WorkGraphPolicy.hpp +include/View/Hooks/Kokkos_ViewHooks.hpp include/decl/Kokkos_Declare_CUDA.hpp include/decl/Kokkos_Declare_HBWSpace.hpp include/decl/Kokkos_Declare_HIP.hpp include/decl/Kokkos_Declare_HPX.hpp +include/decl/Kokkos_Declare_OPENACC.hpp include/decl/Kokkos_Declare_OPENMP.hpp include/decl/Kokkos_Declare_OPENMPTARGET.hpp include/decl/Kokkos_Declare_SERIAL.hpp include/decl/Kokkos_Declare_SYCL.hpp include/decl/Kokkos_Declare_THREADS.hpp include/desul/atomics.hpp include/desul/atomics/Atomic_Ref.hpp include/desul/atomics/CUDA.hpp include/desul/atomics/Common.hpp include/desul/atomics/Compare_Exchange.hpp include/desul/atomics/Compare_Exchange_CUDA.hpp include/desul/atomics/Compare_Exchange_GCC.hpp include/desul/atomics/Compare_Exchange_HIP.hpp include/desul/atomics/Compare_Exchange_MSVC.hpp include/desul/atomics/Compare_Exchange_OpenMP.hpp include/desul/atomics/Compare_Exchange_SYCL.hpp include/desul/atomics/Compare_Exchange_ScopeCaller.hpp include/desul/atomics/Compare_Exchange_Serial.hpp include/desul/atomics/GCC.hpp include/desul/atomics/Generic.hpp include/desul/atomics/HIP.hpp include/desul/atomics/Lock_Array.hpp include/desul/atomics/Lock_Array_Cuda.hpp include/desul/atomics/Lock_Array_HIP.hpp include/desul/atomics/Macros.hpp include/desul/atomics/OpenMP.hpp include/desul/atomics/SYCL.hpp include/desul/atomics/SYCLConversions.hpp include/desul/atomics/cuda/CUDA_asm.hpp include/desul/atomics/cuda/CUDA_asm_exchange.hpp include/desul/atomics/cuda/cuda_cc7_asm.inc include/desul/atomics/cuda/cuda_cc7_asm_atomic_fetch_op.inc include/desul/atomics/cuda/cuda_cc7_asm_atomic_fetch_op.inc_forceglobal include/desul/atomics/cuda/cuda_cc7_asm_atomic_fetch_op.inc_generic include/desul/atomics/cuda/cuda_cc7_asm_atomic_fetch_op.inc_isglobal include/desul/atomics/cuda/cuda_cc7_asm_atomic_fetch_op.inc_predicate include/desul/atomics/cuda/cuda_cc7_asm_atomic_op.inc include/desul/atomics/cuda/cuda_cc7_asm_atomic_op.inc_forceglobal include/desul/atomics/cuda/cuda_cc7_asm_atomic_op.inc_generic include/desul/atomics/cuda/cuda_cc7_asm_atomic_op.inc_isglobal include/desul/atomics/cuda/cuda_cc7_asm_atomic_op.inc_predicate include/desul/atomics/cuda/cuda_cc7_asm_exchange.inc include/desul/atomics/cuda/cuda_cc7_asm_exchange_memorder.inc include/desul/atomics/cuda/cuda_cc7_asm_exchange_op.inc include/desul/atomics/cuda/cuda_cc7_asm_memorder.inc include/desul/atomics/openmp/OpenMP_40.hpp include/desul/atomics/openmp/OpenMP_40_op.inc include/fwd/Kokkos_Fwd_CUDA.hpp include/fwd/Kokkos_Fwd_HBWSpace.hpp include/fwd/Kokkos_Fwd_HIP.hpp include/fwd/Kokkos_Fwd_HPX.hpp +include/fwd/Kokkos_Fwd_OPENACC.hpp include/fwd/Kokkos_Fwd_OPENMP.hpp include/fwd/Kokkos_Fwd_OPENMPTARGET.hpp include/fwd/Kokkos_Fwd_SERIAL.hpp include/fwd/Kokkos_Fwd_SYCL.hpp include/fwd/Kokkos_Fwd_THREADS.hpp include/impl/KokkosExp_Host_IterateTile.hpp include/impl/KokkosExp_IterateTileGPU.hpp include/impl/KokkosExp_ViewMapping.hpp include/impl/Kokkos_AnalyzePolicy.hpp include/impl/Kokkos_Atomic_Assembly.hpp include/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp include/impl/Kokkos_Atomic_Compare_Exchange_Weak.hpp include/impl/Kokkos_Atomic_Decrement.hpp include/impl/Kokkos_Atomic_Exchange.hpp include/impl/Kokkos_Atomic_Fetch_Add.hpp include/impl/Kokkos_Atomic_Fetch_And.hpp include/impl/Kokkos_Atomic_Fetch_Or.hpp include/impl/Kokkos_Atomic_Fetch_Sub.hpp include/impl/Kokkos_Atomic_Generic.hpp include/impl/Kokkos_Atomic_Generic_Secondary.hpp include/impl/Kokkos_Atomic_Increment.hpp include/impl/Kokkos_Atomic_Load.hpp include/impl/Kokkos_Atomic_Memory_Order.hpp include/impl/Kokkos_Atomic_MinMax.hpp include/impl/Kokkos_Atomic_Store.hpp include/impl/Kokkos_Atomic_View.hpp include/impl/Kokkos_Atomic_Windows.hpp include/impl/Kokkos_BitOps.hpp include/impl/Kokkos_Bitset_impl.hpp include/impl/Kokkos_CPUDiscovery.hpp include/impl/Kokkos_ChaseLev.hpp include/impl/Kokkos_ClockTic.hpp include/impl/Kokkos_Combined_Reducer.hpp include/impl/Kokkos_Command_Line_Parsing.hpp include/impl/Kokkos_ConcurrentBitset.hpp include/impl/Kokkos_Default_GraphNodeKernel.hpp include/impl/Kokkos_Default_GraphNode_Impl.hpp include/impl/Kokkos_Default_Graph_Impl.hpp include/impl/Kokkos_Default_Graph_fwd.hpp +include/impl/Kokkos_DeviceManagement.hpp include/impl/Kokkos_EBO.hpp include/impl/Kokkos_Error.hpp -include/impl/Kokkos_ExecSpaceInitializer.hpp +include/impl/Kokkos_ExecSpaceManager.hpp include/impl/Kokkos_FixedBufferMemoryPool.hpp include/impl/Kokkos_Functional_impl.hpp -include/impl/Kokkos_FunctorAdapter.hpp include/impl/Kokkos_FunctorAnalysis.hpp include/impl/Kokkos_GraphImpl.hpp include/impl/Kokkos_GraphImpl_Utilities.hpp include/impl/Kokkos_GraphImpl_fwd.hpp include/impl/Kokkos_GraphNodeCustomization.hpp include/impl/Kokkos_GraphNodeImpl.hpp include/impl/Kokkos_HostBarrier.hpp include/impl/Kokkos_HostSharedPtr.hpp include/impl/Kokkos_HostSpace_deepcopy.hpp include/impl/Kokkos_HostThreadTeam.hpp +include/impl/Kokkos_InitializationSettings.hpp include/impl/Kokkos_LIFO.hpp include/impl/Kokkos_LinkedListNode.hpp include/impl/Kokkos_MemoryPoolAllocator.hpp include/impl/Kokkos_MemorySpace.hpp include/impl/Kokkos_Memory_Fence.hpp include/impl/Kokkos_MultipleTaskQueue.hpp include/impl/Kokkos_OptionalRef.hpp +include/impl/Kokkos_ParseCommandLineArgumentsAndEnvironmentVariables.hpp include/impl/Kokkos_PhysicalLayout.hpp include/impl/Kokkos_Profiling.hpp include/impl/Kokkos_Profiling_C_Interface.h include/impl/Kokkos_Profiling_DeviceInfo.hpp include/impl/Kokkos_Profiling_Interface.hpp include/impl/Kokkos_QuadPrecisionMath.hpp -include/impl/Kokkos_Serial_Task.hpp -include/impl/Kokkos_Serial_WorkGraphPolicy.hpp include/impl/Kokkos_SharedAlloc.hpp include/impl/Kokkos_SharedAlloc_timpl.hpp include/impl/Kokkos_SimpleTaskScheduler.hpp include/impl/Kokkos_SingleTaskQueue.hpp include/impl/Kokkos_Spinwait.hpp include/impl/Kokkos_Stacktrace.hpp include/impl/Kokkos_StaticCrsGraph_factory.hpp +include/impl/Kokkos_StringManipulation.hpp include/impl/Kokkos_TaskBase.hpp include/impl/Kokkos_TaskNode.hpp include/impl/Kokkos_TaskPolicyData.hpp include/impl/Kokkos_TaskQueue.hpp include/impl/Kokkos_TaskQueueCommon.hpp include/impl/Kokkos_TaskQueueMemoryManager.hpp include/impl/Kokkos_TaskQueueMultiple.hpp include/impl/Kokkos_TaskQueueMultiple_impl.hpp include/impl/Kokkos_TaskQueue_impl.hpp include/impl/Kokkos_TaskResult.hpp include/impl/Kokkos_TaskTeamMember.hpp include/impl/Kokkos_Timer.hpp include/impl/Kokkos_Tools.hpp include/impl/Kokkos_Tools_Generic.hpp include/impl/Kokkos_Traits.hpp include/impl/Kokkos_UnorderedMap_impl.hpp include/impl/Kokkos_Utilities.hpp include/impl/Kokkos_VLAEmulation.hpp include/impl/Kokkos_ViewArray.hpp include/impl/Kokkos_ViewCtor.hpp include/impl/Kokkos_ViewLayoutTiled.hpp include/impl/Kokkos_ViewMapping.hpp include/impl/Kokkos_ViewTracker.hpp include/impl/Kokkos_ViewUniformType.hpp include/impl/Kokkos_Volatile_Load.hpp include/setup/Kokkos_Setup_Cuda.hpp include/setup/Kokkos_Setup_HIP.hpp include/setup/Kokkos_Setup_SYCL.hpp +include/std_algorithms/Kokkos_AdjacentDifference.hpp +include/std_algorithms/Kokkos_AdjacentFind.hpp +include/std_algorithms/Kokkos_AllOf.hpp +include/std_algorithms/Kokkos_AnyOf.hpp include/std_algorithms/Kokkos_BeginEnd.hpp -include/std_algorithms/Kokkos_Constraints.hpp +include/std_algorithms/Kokkos_Copy.hpp +include/std_algorithms/Kokkos_CopyBackward.hpp +include/std_algorithms/Kokkos_CopyIf.hpp +include/std_algorithms/Kokkos_CopyN.hpp +include/std_algorithms/Kokkos_Count.hpp +include/std_algorithms/Kokkos_CountIf.hpp include/std_algorithms/Kokkos_Distance.hpp -include/std_algorithms/Kokkos_HelperPredicates.hpp -include/std_algorithms/Kokkos_MinMaxElementOperations.hpp -include/std_algorithms/Kokkos_ModifyingOperations.hpp -include/std_algorithms/Kokkos_ModifyingSequenceOperations.hpp -include/std_algorithms/Kokkos_NonModifyingSequenceOperations.hpp -include/std_algorithms/Kokkos_Numeric.hpp -include/std_algorithms/Kokkos_PartitioningOperations.hpp -include/std_algorithms/Kokkos_RandomAccessIterator.hpp -include/std_algorithms/Kokkos_ReducerWithArbitraryJoinerNoNeutralElement.hpp -include/std_algorithms/Kokkos_SortingOperations.hpp -include/std_algorithms/Kokkos_ValueWrapperForNoNeutralElement.hpp -include/std_algorithms/modifying_sequence_ops/Kokkos_ModifyingSequenceOperationsSet1.hpp -include/std_algorithms/modifying_sequence_ops/Kokkos_ModifyingSequenceOperationsSet2.hpp -include/std_algorithms/numeric/Kokkos_AdjacentDifference.hpp -include/std_algorithms/numeric/Kokkos_ExclusiveScan.hpp -include/std_algorithms/numeric/Kokkos_IdentityReferenceUnaryFunctor.hpp -include/std_algorithms/numeric/Kokkos_InclusiveScan.hpp -include/std_algorithms/numeric/Kokkos_Reduce.hpp -include/std_algorithms/numeric/Kokkos_TransformReduce.hpp +include/std_algorithms/Kokkos_Equal.hpp +include/std_algorithms/Kokkos_ExclusiveScan.hpp +include/std_algorithms/Kokkos_Fill.hpp +include/std_algorithms/Kokkos_FillN.hpp +include/std_algorithms/Kokkos_Find.hpp +include/std_algorithms/Kokkos_FindEnd.hpp +include/std_algorithms/Kokkos_FindFirstOf.hpp +include/std_algorithms/Kokkos_FindIf.hpp +include/std_algorithms/Kokkos_FindIfNot.hpp +include/std_algorithms/Kokkos_ForEach.hpp +include/std_algorithms/Kokkos_ForEachN.hpp +include/std_algorithms/Kokkos_Generate.hpp +include/std_algorithms/Kokkos_GenerateN.hpp +include/std_algorithms/Kokkos_InclusiveScan.hpp +include/std_algorithms/Kokkos_IsPartitioned.hpp +include/std_algorithms/Kokkos_IsSorted.hpp +include/std_algorithms/Kokkos_IsSortedUntil.hpp +include/std_algorithms/Kokkos_IterSwap.hpp +include/std_algorithms/Kokkos_LexicographicalCompare.hpp +include/std_algorithms/Kokkos_MaxElement.hpp +include/std_algorithms/Kokkos_MinElement.hpp +include/std_algorithms/Kokkos_MinMaxElement.hpp +include/std_algorithms/Kokkos_Mismatch.hpp +include/std_algorithms/Kokkos_Move.hpp +include/std_algorithms/Kokkos_MoveBackward.hpp +include/std_algorithms/Kokkos_NoneOf.hpp +include/std_algorithms/Kokkos_PartitionCopy.hpp +include/std_algorithms/Kokkos_PartitionPoint.hpp +include/std_algorithms/Kokkos_Reduce.hpp +include/std_algorithms/Kokkos_Remove.hpp +include/std_algorithms/Kokkos_RemoveCopy.hpp +include/std_algorithms/Kokkos_RemoveCopyIf.hpp +include/std_algorithms/Kokkos_RemoveIf.hpp +include/std_algorithms/Kokkos_Replace.hpp +include/std_algorithms/Kokkos_ReplaceCopy.hpp +include/std_algorithms/Kokkos_ReplaceCopyIf.hpp +include/std_algorithms/Kokkos_ReplaceIf.hpp +include/std_algorithms/Kokkos_Reverse.hpp +include/std_algorithms/Kokkos_ReverseCopy.hpp +include/std_algorithms/Kokkos_Rotate.hpp +include/std_algorithms/Kokkos_RotateCopy.hpp +include/std_algorithms/Kokkos_Search.hpp +include/std_algorithms/Kokkos_SearchN.hpp +include/std_algorithms/Kokkos_ShiftLeft.hpp +include/std_algorithms/Kokkos_ShiftRight.hpp +include/std_algorithms/Kokkos_Swap.hpp +include/std_algorithms/Kokkos_SwapRanges.hpp +include/std_algorithms/Kokkos_Transform.hpp +include/std_algorithms/Kokkos_TransformExclusiveScan.hpp +include/std_algorithms/Kokkos_TransformInclusiveScan.hpp +include/std_algorithms/Kokkos_TransformReduce.hpp +include/std_algorithms/Kokkos_Unique.hpp +include/std_algorithms/Kokkos_UniqueCopy.hpp +include/std_algorithms/impl/Kokkos_AdjacentDifference.hpp +include/std_algorithms/impl/Kokkos_AdjacentFind.hpp +include/std_algorithms/impl/Kokkos_AllOfAnyOfNoneOf.hpp +include/std_algorithms/impl/Kokkos_Constraints.hpp +include/std_algorithms/impl/Kokkos_CopyBackward.hpp +include/std_algorithms/impl/Kokkos_CopyCopyN.hpp +include/std_algorithms/impl/Kokkos_CopyIf.hpp +include/std_algorithms/impl/Kokkos_CountCountIf.hpp +include/std_algorithms/impl/Kokkos_Equal.hpp +include/std_algorithms/impl/Kokkos_ExclusiveScan.hpp +include/std_algorithms/impl/Kokkos_FillFillN.hpp +include/std_algorithms/impl/Kokkos_FindEnd.hpp +include/std_algorithms/impl/Kokkos_FindFirstOf.hpp +include/std_algorithms/impl/Kokkos_FindIfOrNot.hpp +include/std_algorithms/impl/Kokkos_ForEachForEachN.hpp +include/std_algorithms/impl/Kokkos_GenerateGenerateN.hpp +include/std_algorithms/impl/Kokkos_HelperPredicates.hpp +include/std_algorithms/impl/Kokkos_IdentityReferenceUnaryFunctor.hpp +include/std_algorithms/impl/Kokkos_InclusiveScan.hpp +include/std_algorithms/impl/Kokkos_IsPartitioned.hpp +include/std_algorithms/impl/Kokkos_IsSorted.hpp +include/std_algorithms/impl/Kokkos_IsSortedUntil.hpp +include/std_algorithms/impl/Kokkos_LexicographicalCompare.hpp +include/std_algorithms/impl/Kokkos_MinMaxMinmaxElement.hpp +include/std_algorithms/impl/Kokkos_Mismatch.hpp +include/std_algorithms/impl/Kokkos_Move.hpp +include/std_algorithms/impl/Kokkos_MoveBackward.hpp +include/std_algorithms/impl/Kokkos_PartitionCopy.hpp +include/std_algorithms/impl/Kokkos_PartitionPoint.hpp +include/std_algorithms/impl/Kokkos_RandomAccessIterator.hpp +include/std_algorithms/impl/Kokkos_Reduce.hpp +include/std_algorithms/impl/Kokkos_ReducerWithArbitraryJoinerNoNeutralElement.hpp +include/std_algorithms/impl/Kokkos_RemoveAllVariants.hpp +include/std_algorithms/impl/Kokkos_Replace.hpp +include/std_algorithms/impl/Kokkos_ReplaceCopy.hpp +include/std_algorithms/impl/Kokkos_ReplaceCopyIf.hpp +include/std_algorithms/impl/Kokkos_ReplaceIf.hpp +include/std_algorithms/impl/Kokkos_Reverse.hpp +include/std_algorithms/impl/Kokkos_ReverseCopy.hpp +include/std_algorithms/impl/Kokkos_Rotate.hpp +include/std_algorithms/impl/Kokkos_RotateCopy.hpp +include/std_algorithms/impl/Kokkos_Search.hpp +include/std_algorithms/impl/Kokkos_SearchN.hpp +include/std_algorithms/impl/Kokkos_ShiftLeft.hpp +include/std_algorithms/impl/Kokkos_ShiftRight.hpp +include/std_algorithms/impl/Kokkos_SwapRanges.hpp +include/std_algorithms/impl/Kokkos_Transform.hpp +include/std_algorithms/impl/Kokkos_TransformExclusiveScan.hpp +include/std_algorithms/impl/Kokkos_TransformInclusiveScan.hpp +include/std_algorithms/impl/Kokkos_TransformReduce.hpp +include/std_algorithms/impl/Kokkos_Unique.hpp +include/std_algorithms/impl/Kokkos_UniqueCopy.hpp +include/std_algorithms/impl/Kokkos_ValueWrapperForNoNeutralElement.hpp include/traits/Kokkos_ExecutionSpaceTrait.hpp include/traits/Kokkos_GraphKernelTrait.hpp include/traits/Kokkos_IndexTypeTrait.hpp include/traits/Kokkos_IterationPatternTrait.hpp include/traits/Kokkos_LaunchBoundsTrait.hpp include/traits/Kokkos_OccupancyControlTrait.hpp include/traits/Kokkos_PolicyTraitAdaptor.hpp include/traits/Kokkos_PolicyTraitMatcher.hpp include/traits/Kokkos_ScheduleTrait.hpp include/traits/Kokkos_Traits_fwd.hpp include/traits/Kokkos_WorkItemPropertyTrait.hpp include/traits/Kokkos_WorkTagTrait.hpp lib/cmake/Kokkos/KokkosConfig.cmake lib/cmake/Kokkos/KokkosConfigCommon.cmake lib/cmake/Kokkos/KokkosConfigVersion.cmake lib/cmake/Kokkos/KokkosTargets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/Kokkos/KokkosTargets.cmake lib/libkokkoscontainers.so -lib/libkokkoscontainers.so.3.6 -lib/libkokkoscontainers.so.3.6.01 +lib/libkokkoscontainers.so.3.7 +lib/libkokkoscontainers.so.3.7.00 lib/libkokkoscore.so -lib/libkokkoscore.so.3.6 -lib/libkokkoscore.so.3.6.01 +lib/libkokkoscore.so.3.7 +lib/libkokkoscore.so.3.7.00 diff --git a/science/lammps/Makefile b/science/lammps/Makefile index 3d02aa3e8119..b71779d499d1 100644 --- a/science/lammps/Makefile +++ b/science/lammps/Makefile @@ -1,151 +1,152 @@ PORTNAME= lammps PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/S/_update/./} +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Classical molecular dynamics code with a focus on materials modeling WWW= https://lammps.sandia.gov/ LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' LIB_DEPENDS= libevent.so:devel/libevent \ libfftw3.so:math/fftw3 \ libhwloc.so:devel/hwloc2 \ libnghttp2.so:www/libnghttp2 \ libpciaccess.so:devel/libpciaccess \ libssh2.so:security/libssh2 \ libzstd.so:archivers/zstd USES= blaslapack:openblas cmake:noninja compiler:c++14-lang eigen:3 fortran gnome localbase:ldflags python shebangfix USE_GNOME= libxml2 USE_LDCONFIG= yes USE_PYTHON= cython USE_GITHUB= yes GH_TAGNAME= stable_23Jun2022_update1 SHEBANG_GLOB= *.sh *.bash SHEBANG_FILES= lib/kokkos/bin/nvcc_wrapper CMAKE_ON= BUILD_SHARED_LIBS CMAKE_SOURCE_PATH= ${WRKSRC}/cmake CMAKE_ARGS= -DBLA_VENDOR:STRING="OpenBLAS" ${CMAKE_ARGS_${CHOSEN_COMPILER_TYPE}} \ -DPython_EXECUTABLE=${PYTHON_CMD} CMAKE_ARGS_gcc= -DBUILD_OMP:BOOL=false # enable packages (for a complete list see STANDARD_PACKAGES in cmake/CMakeLists.txt) CMAKE_ON+= PKG_ASPHERE PKG_ATC PKG_AWPMD PKG_BOCS PKG_BODY PKG_BROWNIAN PKG_CG-DNA PKG_CG-SDK PKG_CLASS2 CMAKE_ON+= PKG_COLLOID PKG_COLVARS PKG_COMPRESS PKG_DIELECTRIC PKG_DIFFRACTION PKG_DIPOLE PKG_DPD-BASIC PKG_DPD-MESO PKG_DPD-REACT PKG_DPD-SMOOTH CMAKE_ON+= PKG_DRUDE PKG_EFF PKG_EXTRA-COMPUTE PKG_EXTRA-DUMP PKG_EXTRA-FIX PKG_EXTRA-MOLECULE PKG_EXTRA-PAIR PKG_FEP PKG_GRANULAR PKG_H5MD CMAKE_ON+= PKG_INTERLAYER PKG_KIM PKG_KSPACE PKG_LATBOLTZ PKG_LATTE PKG_MACHDYN PKG_MANIFOLD PKG_MANYBODY PKG_MC CMAKE_ON+= PKG_MEAM PKG_MESSAGE PKG_MGPT PKG_MISC PKG_ML-IAP PKG_ML-RANN CMAKE_ON+= PKG_ML-SNAP PKG_MOFFF PKG_MOLECULE PKG_MOLFILE PKG_MPIIO PKG_ORIENT PKG_PERI PKG_PHONON CMAKE_ON+= PKG_PLUGIN PKG_PLUMED PKG_POEMS PKG_PTM PKG_PYTHON PKG_QEQ PKG_QMMM PKG_QTB PKG_REACTION PKG_REAXFF CMAKE_ON+= PKG_REPLICA PKG_RIGID PKG_SHOCK PKG_SMTBQ PKG_SPH PKG_SPIN PKG_SRD PKG_TALLY PKG_UEF CMAKE_ON+= PKG_VORONOI PKG_YAFF # Packages requiring extra downloades or dependencies: PKG_MSCG PKG_ADIOS PKG_MDI PKG_MESONT PKG_ML-PACE PKG_NETCDF PKG_ML-QUIP PKG_SCAFACOS PKG_VTK # PKG_ML-HDNNP downloads https://github.com/CompPhysVienna/n2p2/archive/v2.1.4.tar.gz OPTIONS_DEFINE= EXCEPTIONS JPEG PNG GZIP FFMPEG OPTIONS_GROUP= PARALLEL PACKAGES OPTIONS_DEFAULT= EXCEPTIONS MPI OPENMP JPEG PNG GZIP FFMPEG H5MD KIM KOKKOS LATTE PLUMED VORONOI ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}} OPTIONS_SUB= yes PARALLEL_DESC= Enable parallelizations: PACKAGES_DESC= Enable packages: OPTIONS_GROUP_PARALLEL= MPI OPENMP ${OPTIONS_DEFINE_${CHOSEN_COMPILER_TYPE}} OPTIONS_GROUP_PACKAGES= H5MD KIM KOKKOS LATTE PLUMED VORONOI VTK EXCEPTIONS_DESC= Enable the use of C++ exceptions EXCEPTIONS_CMAKE_BOOL= LAMMPS_EXCEPTIONS MPI_CMAKE_BOOL= BUILD_MPI PKG_MPIIO PKG_USER-LB MPI_LIB_DEPENDS= libmpi.so:net/mpich MPI_USES= compiler:c11 FFMPEG_CMAKE_BOOL= WITH_FFMPEG FFMPEG_BUILD_DEPENDS= ffmpeg:multimedia/ffmpeg FFMPEG_RUN_DEPENDS= ffmpeg:multimedia/ffmpeg JPEG_CMAKE_BOOL= WITH_JPEG JPEG_USES= jpeg PNG_CMAKE_BOOL= WITH_PNG PNG_LIB_DEPENDS= libpng.so:graphics/png GZIP_DESC= Enable GZIP support GZIP_CMAKE_BOOL= WITH_GZIP H5MD_DESC= USER-H5MD package based on libhdf5 H5MD_CMAKE_BOOL= PKG_USER-H5MD H5MD_LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/libaec KIM_DESC= KIM package based on the OpenKim library/repository KIM_USES= pkgconfig KIM_CMAKE_BOOL= PKG_KIM KIM_CMAKE_ON= -DDOWNLOAD_KIM:BOOL=OFF KIM_LIB_DEPENDS= libkim-api.so:science/kim-api \ libcurl.so:ftp/curl KIM_RUN_DEPENDS= openkim-models>0:science/openkim-models KOKKOS_DESC= kokkos package based on the libkokkos library KOKKOS_CMAKE_BOOL= PKG_KOKKOS EXTERNAL_KOKKOS KOKKOS_LIB_DEPENDS= libkokkoscore.so:devel/kokkos LATTE_DESC= latte package based on the liblatte library LATTE_CMAKE_BOOL= PKG_LATTE LATTE_LIB_DEPENDS= liblatte.so:science/latte PLUMED_DESC= plumed package based on the plumed library PLUMED_USES= pkgconfig PLUMED_CMAKE_BOOL= PKG_USER-PLUMED PLUMED_CMAKE_ON= -DPLUMED_MODE=shared PLUMED_LIB_DEPENDS= libplumed.so:science/plumed VORONOI_DESC= voro++, Voronoi tessellation package VORONOI_CMAKE_BOOL= PKG_VORONOI VORONOI_LIB_DEPENDS= libvoro++.so:science/voro++ VTK_DESC= USER-VTK package based on the external vtk package VTK_CMAKE_BOOL= PKG_USER-VTK VTK_CMAKE_ON= -DVTK_DIR:PATH=${LOCALBASE}/lib/cmake/vtk-9.1 VTK_USES= qt:5 xorg VTK_USE= qt=core,gui,sql,widgets xorg=ice,sm,x11,xext,xt VTK_LIB_DEPENDS= libvtkImagingMath-8.2.so:math/vtk8 \ libexpat.so:textproc/expat2 \ libfreetype.so:print/freetype2 \ libtiff.so:graphics/tiff PORTSCOUT= ignore:1 # due to a special version tagging scheme that this project uses portscout fails to find new versions, watching their GitHub release page instead .include .if ${PORT_OPTIONS:MOPENMP} CMAKE_ARGS+= -DBUILD_OMP:BOOL=true .endif xpost-patch: # adjust SHELL in Makefile @${REINPLACE_CMD} 's|SHELL = /bin/bash|SHELL = ${LOCALBASE}/bin/bash|' ${WRKSRC}/src/Makefile # fix python version, also see https://github.com/lammps/lammps/issues/3098, https://github.com/lammps/lammps/issues/3099 @${FIND} ${WRKSRC} -name "CMakeLists.txt" -o -name "*.cmake" | ${XARGS} ${REINPLACE_CMD} -e ' \ s|find_package(Python3 REQUIRED |find_package(Python $${FREEBSD_PYTHON_VER} EXACT REQUIRED |; \ s|find_package(Python 3.5 COMPONENTS |find_package(Python $${FREEBSD_PYTHON_VER} EXACT COMPONENTS |; \ s|find_package(Python 3.6 COMPONENTS |find_package(Python $${FREEBSD_PYTHON_VER} EXACT COMPONENTS |; \ s|find_package(Python3 REQUIRED |find_package(Python $${FREEBSD_PYTHON_VER} EXACT REQUIRED |; \ s|find_package(Python COMPONENTS |find_package(Python3 $${FREEBSD_PYTHON_VER} EXACT COMPONENTS |; \ s|find_package(Python3 COMPONENTS |find_package(Python3 $${FREEBSD_PYTHON_VER} EXACT COMPONENTS |; \ s|find_package(Python QUIET COMPONENTS |find_package(Python3 $${FREEBSD_PYTHON_VER} EXACT QUIET COMPONENTS |; \ s|find_package(Python REQUIRED COMPONENTS |find_package(Python3 $${FREEBSD_PYTHON_VER} EXACT REQUIRED COMPONENTS | \ ' post-patch-FFMPEG-off: @${REINPLACE_CMD} 's|find_program(FFMPEG_EXECUTABLE|#&|' ${WRKSRC}/cmake/CMakeLists.txt post-install: @${RM} -r ${STAGEDIR}${PREFIX}/lib/python* .include diff --git a/science/nlcglib/Makefile b/science/nlcglib/Makefile index ee92518453d1..66a366377c66 100644 --- a/science/nlcglib/Makefile +++ b/science/nlcglib/Makefile @@ -1,38 +1,39 @@ PORTNAME= nlcglib DISTVERSIONPREFIX= v DISTVERSION= 0.9-148 +PORTREVISION= 1 DISTVERSIONSUFFIX= -g9a1bca6 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Nonlinear CG methods for wave-function optimization in DFT WWW= https://github.com/simonpintarelli/nlcglib LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= nlohmann-json>0:devel/nlohmann-json LIB_DEPENDS= libkokkoscore.so:devel/kokkos \ libopenblas.so:math/openblas TEST_DEPENDS= googletest>0:devel/googletest USES= cmake:testing pkgconfig USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= simonpintarelli CMAKE_TESTING_ON= BUILD_TESTS # tests fail to compile, see https://github.com/simonpintarelli/nlcglib/issues/14 OPTIONS_DEFINE= OPENMP OPTIONS_SINGLE= MPI OPTIONS_SINGLE_MPI= MPICH OPENMPI OPTIONS_DEFAULT= MPICH OPENMP MPICH_USES= mpi:mpich OPENMPI_USES= mpi:openmpi OPENMP_CMAKE_BOOL= USE_OPENMP # binaries are still linked with libomp when USE_OPENMP=OFF, see https://github.com/simonpintarelli/nlcglib/issues/13 .include diff --git a/science/sirius/Makefile b/science/sirius/Makefile index 454f3b900cf0..0cf736524d6e 100644 --- a/science/sirius/Makefile +++ b/science/sirius/Makefile @@ -1,51 +1,52 @@ PORTNAME= sirius DISTVERSIONPREFIX= v DISTVERSION= 7.3.2 +PORTREVISION= 1 CATEGORIES= science PKGNAMESUFFIX= -quantum-chemistry # other software also has the name "sirius" PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES= c45ef15637958885b1b299c09ec1bf9376e50ecc.patch:-p1 # https://github.com/electronic-structure/SIRIUS/pull/757 MAINTAINER= yuri@FreeBSD.org COMMENT= Domain specific library for electronic structure calculations WWW= https://github.com/electronic-structure/SIRIUS LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libcosta.so:math/costa \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas \ libscalapack.so:math/scalapack \ libspfft.so:math/spfft \ libspla.so:math/spla \ libsymspg.so:science/spglib \ libxc.so:science/libxc USES= cmake:testing compiler:c++14-lang eigen:3,test fortran pkgconfig USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= electronic-structure GH_PROJECT= SIRIUS OPTIONS_DEFINE= NLCGLIB OPTIONS_SINGLE= MPI OPTIONS_SINGLE_MPI= MPICH OPENMPI OPTIONS_DEFAULT= MPICH # NLCGLIB NLCGLIB_DESC= Enable nlcglib NLCGLIB_CMAKE_BOOL= USE_NLCGLIB NLCGLIB_LIB_DEPENDS= libnlcglib.so:science/nlcglib \ libkokkoscore.so:devel/kokkos NLCGLIB_BROKEN= build breaks, see https://github.com/electronic-structure/SIRIUS/issues/759 MPICH_USES= mpi:mpich OPENMPI_USES= mpi:openmpi # many tests fail, see https://github.com/electronic-structure/SIRIUS/issues/760 .include