diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 85e509a6435b..d326ae2b0b65 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -1,39 +1,39 @@ # Created by: Reed A. Cartwright PORTNAME= htslib -DISTVERSION= 1.12 +DISTVERSION= 1.13 CATEGORIES= biology devel # Github generated distfiles are incomplete, so use custom tarball MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ MAINTAINER= jwb@FreeBSD.org COMMENT= C library for high-throughput sequencing data formats LICENSE= BSD3CLAUSE MIT LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libdeflate.so:archivers/libdeflate TEST_DEPENDS= bash:shells/bash USES= autoreconf gmake localbase pathfix perl5 shebangfix tar:bzip2 USE_PERL5= test USE_LDCONFIG= yes GNU_CONFIGURE= yes PATHFIX_MAKEFILEIN= Makefile SHEBANG_FILES= test/*.pl OPTIONS_DEFINE= CURL OPTIONS_DEFAULT= CURL CURL_DESC= Use libcurl for network file access (HTTPS and S3 support). CURL_USES= ssl CURL_LIB_DEPENDS= libcurl.so:ftp/curl CURL_CONFIGURE_ENABLE= libcurl PLIST_SUB= PORTVERSION="${PORTVERSION}" TEST_TARGET= test .include diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 2bc449b5deb6..dc4bf1b4ea09 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112272 -SHA256 (htslib-1.12.tar.bz2) = 2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca -SIZE (htslib-1.12.tar.bz2) = 4094458 +TIMESTAMP = 1626039683 +SHA256 (htslib-1.13.tar.bz2) = f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65 +SIZE (htslib-1.13.tar.bz2) = 4226834 diff --git a/biology/htslib/files/patch-hts.c b/biology/htslib/files/patch-hts.c deleted file mode 100644 index d18904348c86..000000000000 --- a/biology/htslib/files/patch-hts.c +++ /dev/null @@ -1,10 +0,0 @@ ---- hts.c.orig 2020-10-18 00:49:42 UTC -+++ hts.c -@@ -39,6 +39,7 @@ DEALINGS IN THE SOFTWARE. */ - #include - #include - #include -+#include // R_OK - - #include "htslib/hts.h" - #include "htslib/bgzf.h"