diff --git a/biology/py-macs3/Makefile b/biology/py-macs3/Makefile index 6ad3d9000471..b51819da5c62 100644 --- a/biology/py-macs3/Makefile +++ b/biology/py-macs3/Makefile @@ -1,49 +1,52 @@ PORTNAME= MACS3 DISTVERSIONPREFIX= v DISTVERSION= 3.0.1 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Peak caller aimed at transcription factor binding sites WWW= https://github.com/taoliu/MACS LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +NOT_FOR_ARCHS= i386 +NOT_FOR_ARCHS_REASON_i386=Requires _Float16 + BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PYNUMPY} \ simde>0:devel/simde \ ${PYTHON_PKGNAMEPREFIX}cykhash>0:devel/py-cykhash@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hmmlearn>0:math/py-hmmlearn@${PY_FLAVOR} RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}cykhash>0:devel/py-cykhash@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hmmlearn>0:math/py-hmmlearn@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ bash:shells/bash USES= localbase perl5 python shebangfix USE_GITHUB= yes USE_PERL5= test USE_PYTHON= autoplist concurrent cython pep517 GH_ACCOUNT= macs3-project GH_PROJECT= MACS SHEBANG_FILES= test/cmdlinetest* test/prockreport test/*.py test/pyprofile* .include .if ${OPSYS} == FreeBSD && ${OSVERSION} < 1302509 IGNORE= does not run properly on FreeBSD 13.2 and earlier due to use of dynamically loaded libc by py-threadpoolctl. Please upgrade to a newer FreeBSD or use py-macs2 instead. See PR 276231 .endif post-stage: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS3/*/*.so # FIXME: Some tests fail due to a py-threadpoolctl issue # https://github.com/joblib/threadpoolctl/pull/148 do-test: deinstall reinstall @${RM} -rf ${WRKSRC}/temp @cd ${WRKSRC}/test && ./cmdlinetest tag .include diff --git a/biology/py-macs3/distinfo b/biology/py-macs3/distinfo index b06631987784..b742493c53a1 100644 --- a/biology/py-macs3/distinfo +++ b/biology/py-macs3/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1708785426 +TIMESTAMP = 1713397031 SHA256 (macs3-project-MACS-v3.0.1_GH0.tar.gz) = 8a2f5b2dccfc255ea2fd5e54e0d6aa9c12f5ce83762b17b779ce2546ade860ce SIZE (macs3-project-MACS-v3.0.1_GH0.tar.gz) = 197400439