diff --git a/science/py-spglib/Makefile b/science/py-spglib/Makefile
index 6a2950dea35d..14ad98f6aa4a 100644
--- a/science/py-spglib/Makefile
+++ b/science/py-spglib/Makefile
@@ -1,34 +1,35 @@
 PORTNAME=	spglib
 DISTVERSIONPREFIX=	v
 DISTVERSION=	2.5.0
 PORTREVISION=	1
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Library for finding and handling crystal symmetries (python binding)
-WWW=		https://spglib.readthedocs.io/en/stable/
+WWW=		https://spglib.readthedocs.io/en/stable/ \
+		https://github.com/spglib/spglib
 
 LICENSE=	BSD3CLAUSE
 
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} \
 		cmake:devel/cmake-core \
 		${PYNUMPY} \
 		${PY_SETUPTOOLS}
 LIB_DEPENDS=	libsymspg.so:science/spglib
 RUN_DEPENDS=	${PYNUMPY}
 
 USES=		python
 USE_PYTHON=	pep517 autoplist pytest # tests fail to run, see https://github.com/spglib/spglib/issues/192
 USE_GITHUB=	yes
 
 CMAKE_ARGS=	-DPython3_EXECUTABLE=${PYTHON_CMD}
 
 MAKE_ENV=	SETUPTOOLS_SCM_PRETEND_VERSION=${DISTVERSION}
 
 TEST_WRKSRC=	${WRKSRC}
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 
 .include <bsd.port.mk>
diff --git a/science/py-spglib/files/patch-pyproject.toml b/science/py-spglib/files/patch-pyproject.toml
index e4e8f702013c..38d350736f4d 100644
--- a/science/py-spglib/files/patch-pyproject.toml
+++ b/science/py-spglib/files/patch-pyproject.toml
@@ -1,11 +1,21 @@
---- pyproject.toml.orig	2024-07-12 07:15:17 UTC
+- removal of license-files is a workaround for https://github.com/spglib/spglib/issues/560
+
+--- pyproject.toml.orig	2024-07-11 08:36:56 UTC
 +++ pyproject.toml
 @@ -1,7 +1,7 @@
  [build-system]
  # Numpy build and runtime dependencies are linked to ABI compatibility
  # A new wheel rebuild is needed when changing these
 -requires = ["scikit-build-core", "numpy~=2.0"]
 +requires = ["scikit-build-core", "numpy"]
  build-backend = "scikit_build_core.build"
  
  [project]
+@@ -9,7 +9,6 @@ license = { text = "BSD-3-Clause" }
+ requires-python = ">=3.9"
+ description = "This is the spglib module."
+ license = { text = "BSD-3-Clause" }
+-license-files = { paths = ["COPYING"] }
+ readme = "python/README.rst"
+ dynamic = ["version"]
+ dependencies = [