diff --git a/science/openmolcas/Makefile b/science/openmolcas/Makefile index 84d6600f3d62..e1d2f945af47 100644 --- a/science/openmolcas/Makefile +++ b/science/openmolcas/Makefile @@ -1,51 +1,64 @@ PORTNAME= openmolcas -DISTVERSION= 22.02 -PORTREVISION= 2 +DISTVERSION= 22.06 CATEGORIES= science # chemistry MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum chemistry software package LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= build breaks: Symbol 'maxfilesize' at (1) has no IMPLICIT type; did you mean 'mxfile'? -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} \ + chemps2:science/chemps2 LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/libaec \ libxc.so:science/libxc -USES= cmake fortran python shebangfix +USES= cmake:testing fortran python shebangfix USE_GCC= yes # see https://gitlab.com/Molcas/OpenMolcas/-/issues/351 USE_GITLAB= yes GL_ACCOUNT= Molcas GL_PROJECT= OpenMolcas -GL_COMMIT= f8df69cf87b241a15ebc82d72a8f9a031a385dd4 +GL_COMMIT= 17238da5c339c41ddf14ceb88f139d57143d7a14 USE_GITHUB= nodefault GH_TUPLE= Reference-LAPACK:lapack:aa631b4b:lapack/External/lapack \ + ilyak:libefp:7d1ff5fd:libefp/External/efp \ + mcodev31:libmsym:0c47befe:libmsym/External/libmsym \ libwfa:libwfa:bbe3392a:libwfa/External/libwfa SHEBANG_FILES= sbin/help_doc sbin/help_func sbin/help_basis sbin/setup sbin/verify sbin/version +SHEBANG_GLOB= *.py +CMAKE_ON= CHEMPS2 EFPLIB MSYM # TODO GEN1INT - package doesn't install itself, WFA - breaks due to https://gitlab.com/conradsnicta/armadillo-code/-/issues/216 CMAKE_ARGS= -DEXTERNAL_LIBXC:STRING=${LOCALBASE} \ -DFREEBSD_PYTHON_VER:STRING=${PYTHON_VER} -#CMAKE_ON= # for EFPLIB, MSYM see https://gitlab.com/Molcas/OpenMolcas/-/issues/350, for WFA - hdf5 needs updating CMAKE_OFF= BUILD_TESTING CMAKE_INSTALL_PREFIX= ${DATADIR} # installed into DATADIR because it doesn't respect UNIX file path conventions, see https://gitlab.com/Molcas/OpenMolcas/-/issues/352 BINARY_ALIAS= cpp=${CPP} # cpp is called from cmake scripts +BINARY_ALIAS+= python3=${PYTHON_CMD} # cpp is called from cmake scripts + +post-patch: + # fix python path + @${REINPLACE_CMD} -e "s|'/usr/bin/env python3'|'${PYTHON_CMD}'|" ${WRKSRC}/Tools/pymolcas/export.py post-install: # remove unused static libraries, see https://gitlab.com/Molcas/OpenMolcas/-/issues/354 @${RM} -r ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/lib # remove unnecessary fines @${RM} ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/CONTRIBUTORS.md @${RM} ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/LICENSE + # remove empty include directory + @${RMDIR} ${STAGEDIR}${DATADIR}/include # remove empty doc directory @${RMDIR} ${STAGEDIR}${DATADIR}/doc +post-test: # A total of 5 test(s) failed, with 3 critical failure(s), see https://gitlab.com/Molcas/OpenMolcas/-/issues/369 + @cd ${BUILD_WRKSRC} && ${STAGEDIR}${DATADIR}/pymolcas verify + .include diff --git a/science/openmolcas/distinfo b/science/openmolcas/distinfo index 962f32203d22..700d7e0c5174 100644 --- a/science/openmolcas/distinfo +++ b/science/openmolcas/distinfo @@ -1,7 +1,11 @@ -TIMESTAMP = 1653368495 +TIMESTAMP = 1658693647 SHA256 (Reference-LAPACK-lapack-aa631b4b_GH0.tar.gz) = 04ddd43c8b1bed6447427e9dd2b4dd2ead7e2497d7a8fa5fea7f9b31f52117a2 SIZE (Reference-LAPACK-lapack-aa631b4b_GH0.tar.gz) = 7631245 +SHA256 (ilyak-libefp-7d1ff5fd_GH0.tar.gz) = 147ba9713bba4f7587c349fb19ff372c4279f011a009d09bd00ec1ae89dba868 +SIZE (ilyak-libefp-7d1ff5fd_GH0.tar.gz) = 5614915 +SHA256 (mcodev31-libmsym-0c47befe_GH0.tar.gz) = 6a18fe4e5ff1595b86f30c96b68844951471b0333a2940cc0031feaf963a3dec +SIZE (mcodev31-libmsym-0c47befe_GH0.tar.gz) = 88596 SHA256 (libwfa-libwfa-bbe3392a_GH0.tar.gz) = c130488370ab0df228e532c80223ded3d23d80f04d405c2912588cfcfa05d121 SIZE (libwfa-libwfa-bbe3392a_GH0.tar.gz) = 192935 -SHA256 (Molcas-OpenMolcas-f8df69cf87b241a15ebc82d72a8f9a031a385dd4_GL0.tar.gz) = 862ab4e5a76955e67af870c7c1b4344c250784299c5c0363c425a722671a892a -SIZE (Molcas-OpenMolcas-f8df69cf87b241a15ebc82d72a8f9a031a385dd4_GL0.tar.gz) = 38439145 +SHA256 (Molcas-OpenMolcas-17238da5c339c41ddf14ceb88f139d57143d7a14_GL0.tar.gz) = e5d47d0624f88c5980a334aab9c8b353c679acbf1f5fb75d93277daf8dd3d18d +SIZE (Molcas-OpenMolcas-17238da5c339c41ddf14ceb88f139d57143d7a14_GL0.tar.gz) = 38467330 diff --git a/science/openmolcas/files/patch-CMakeLists.txt b/science/openmolcas/files/patch-CMakeLists.txt index 5fff45b0e5f2..f603a10feeb5 100644 --- a/science/openmolcas/files/patch-CMakeLists.txt +++ b/science/openmolcas/files/patch-CMakeLists.txt @@ -1,11 +1,22 @@ ---- CMakeLists.txt.orig 2022-05-24 05:51:48 UTC +--- CMakeLists.txt.orig 2022-06-07 08:43:34 UTC +++ CMakeLists.txt @@ -48,7 +48,7 @@ find_program (GIT "git") find_program (PERL "perl") mark_as_advanced (FORCE GIT PERL) -FIND_PACKAGE (Python COMPONENTS Interpreter) +FIND_PACKAGE (Python ${FREEBSD_PYTHON_VER} EXACT COMPONENTS Interpreter) ################################################################################ # # +@@ -2375,6 +2375,10 @@ message ("Configuring runtime environment settings:") + cmake_host_system_information (RESULT host_mem QUERY TOTAL_PHYSICAL_MEMORY) + cmake_host_system_information (RESULT host_name QUERY HOSTNAME) + cmake_host_system_information (RESULT host_system QUERY OS_NAME) ++ ++# workaround for https://gitlab.kitware.com/cmake/cmake/-/issues/23776 ++execute_process(COMMAND sysctl -n hw.physmem OUTPUT_VARIABLE host_mem) ++math (EXPR host_mem "${host_mem}/1024/1024") + + # memory/disk default sizes + #========================== diff --git a/science/openmolcas/pkg-plist b/science/openmolcas/pkg-plist index 3c439dfd8557..4e1f40919aca 100644 --- a/science/openmolcas/pkg-plist +++ b/science/openmolcas/pkg-plist @@ -1,214 +1,215 @@ %%DATADIR%%/.molcashome %%DATADIR%%/.molcasversion %%DATADIR%%/basis_library/3-21G %%DATADIR%%/basis_library/4-31G %%DATADIR%%/basis_library/5-21G %%DATADIR%%/basis_library/6-311Gpp %%DATADIR%%/basis_library/6-31G %%DATADIR%%/basis_library/6-31Gpp %%DATADIR%%/basis_library/AHLRICHS_VDZ %%DATADIR%%/basis_library/AHLRICHS_VTZ %%DATADIR%%/basis_library/AIMP.README %%DATADIR%%/basis_library/ANO-DK3 %%DATADIR%%/basis_library/ANO-L %%DATADIR%%/basis_library/ANO-ORCA %%DATADIR%%/basis_library/ANO-R %%DATADIR%%/basis_library/ANO-RCC %%DATADIR%%/basis_library/ANO-RCC.README %%DATADIR%%/basis_library/ANO-S %%DATADIR%%/basis_library/ANO-XS %%DATADIR%%/basis_library/AUG-CC-PV5Z %%DATADIR%%/basis_library/AUG-CC-PV6Z %%DATADIR%%/basis_library/AUG-CC-PVDZ %%DATADIR%%/basis_library/AUG-CC-PVQZ %%DATADIR%%/basis_library/AUG-CC-PVTZ %%DATADIR%%/basis_library/AUG-PC-0 %%DATADIR%%/basis_library/AUG-PC-1 %%DATADIR%%/basis_library/AUG-PC-2 %%DATADIR%%/basis_library/AUG-PC-3 %%DATADIR%%/basis_library/AUG-PC-4 %%DATADIR%%/basis_library/CC-PV5Z %%DATADIR%%/basis_library/CC-PV5Z-DK %%DATADIR%%/basis_library/CC-PVDZ %%DATADIR%%/basis_library/CC-PVDZ-DK %%DATADIR%%/basis_library/CC-PVQZ %%DATADIR%%/basis_library/CC-PVQZ-DK %%DATADIR%%/basis_library/CC-PVTZ %%DATADIR%%/basis_library/CC-PVTZ-DK %%DATADIR%%/basis_library/CC-PWCV5Z-DK %%DATADIR%%/basis_library/CC-PWCVQZ-DK %%DATADIR%%/basis_library/CC-PWCVTZ-DK %%DATADIR%%/basis_library/CG-AIMP %%DATADIR%%/basis_library/DEF-SV-P %%DATADIR%%/basis_library/DEF-SVP %%DATADIR%%/basis_library/DEF-TZVP %%DATADIR%%/basis_library/DEF2-SVP %%DATADIR%%/basis_library/DEF2-TZVP %%DATADIR%%/basis_library/DEF2-TZVPP %%DATADIR%%/basis_library/EMB-AIMP %%DATADIR%%/basis_library/JGAUSS-DZP %%DATADIR%%/basis_library/LANL2DZ %%DATADIR%%/basis_library/LANL2DZ_NL %%DATADIR%%/basis_library/MCP-AQZP %%DATADIR%%/basis_library/MCP-ATZP %%DATADIR%%/basis_library/MCP-DZP %%DATADIR%%/basis_library/MCP-QZP %%DATADIR%%/basis_library/MCP-TZP %%DATADIR%%/basis_library/MUONIC %%DATADIR%%/basis_library/NP-AIMP %%DATADIR%%/basis_library/NR-AIMP %%DATADIR%%/basis_library/PC-0 %%DATADIR%%/basis_library/PC-1 %%DATADIR%%/basis_library/PC-2 %%DATADIR%%/basis_library/PC-3 %%DATADIR%%/basis_library/PC-4 %%DATADIR%%/basis_library/QRPLIB %%DATADIR%%/basis_library/RAF-R %%DATADIR%%/basis_library/RYDBERG %%DATADIR%%/basis_library/SADLEJ_PVTZ %%DATADIR%%/basis_library/SARC2-QZVP-DKH2 %%DATADIR%%/basis_library/STO-3G %%DATADIR%%/basis_library/STUTTGART %%DATADIR%%/basis_library/STUTTGART_NL %%DATADIR%%/basis_library/basis.tbl %%DATADIR%%/basis_library/basistype.tbl %%DATADIR%%/basis_library/c_Basis/DEF-SV-P %%DATADIR%%/basis_library/c_Basis/DEF-SVP %%DATADIR%%/basis_library/c_Basis/DEF-TZVP %%DATADIR%%/basis_library/c_Basis/basis.tbl %%DATADIR%%/basis_library/c_Basis/basistype.tbl %%DATADIR%%/basis_library/c_Basis/trans.tbl %%DATADIR%%/basis_library/j_Basis/DEF-SV-P %%DATADIR%%/basis_library/j_Basis/DEF-SVP %%DATADIR%%/basis_library/j_Basis/DEF-TZVP %%DATADIR%%/basis_library/j_Basis/basis.tbl %%DATADIR%%/basis_library/j_Basis/basistype.tbl %%DATADIR%%/basis_library/j_Basis/trans.tbl %%DATADIR%%/basis_library/jk_Basis/CC-PVTZ %%DATADIR%%/basis_library/jk_Basis/DEF-SV-P %%DATADIR%%/basis_library/jk_Basis/DEF-SVP %%DATADIR%%/basis_library/jk_Basis/basis.tbl %%DATADIR%%/basis_library/jk_Basis/basistype.tbl %%DATADIR%%/basis_library/jk_Basis/trans.tbl %%DATADIR%%/basis_library/trans.tbl %%DATADIR%%/bin/alaska.exe %%DATADIR%%/bin/averd.exe %%DATADIR%%/bin/caspt2.exe %%DATADIR%%/bin/casvb.exe %%DATADIR%%/bin/ccsdt.exe %%DATADIR%%/bin/chcc.exe %%DATADIR%%/bin/cht3.exe %%DATADIR%%/bin/cpf.exe %%DATADIR%%/bin/dynamix.exe %%DATADIR%%/bin/espf.exe %%DATADIR%%/bin/expbas.exe %%DATADIR%%/bin/extf.exe %%DATADIR%%/bin/false.exe %%DATADIR%%/bin/ffpt.exe %%DATADIR%%/bin/gateway.exe %%DATADIR%%/bin/genano.exe %%DATADIR%%/bin/grid_it.exe %%DATADIR%%/bin/guessorb.exe %%DATADIR%%/bin/guga.exe %%DATADIR%%/bin/gugaci.exe %%DATADIR%%/bin/gugadrt.exe %%DATADIR%%/bin/last_energy.exe %%DATADIR%%/bin/localisation.exe %%DATADIR%%/bin/loprop.exe %%DATADIR%%/bin/mbpt2.exe %%DATADIR%%/bin/mckinley.exe %%DATADIR%%/bin/mclr.exe %%DATADIR%%/bin/mcpdft.exe %%DATADIR%%/bin/motra.exe %%DATADIR%%/bin/mpprop.exe %%DATADIR%%/bin/mrci.exe %%DATADIR%%/bin/mula.exe %%DATADIR%%/bin/numerical_gradient.exe %%DATADIR%%/bin/parnell.exe %%DATADIR%%/bin/poly_aniso.exe %%DATADIR%%/bin/qmstat.exe %%DATADIR%%/bin/quater.exe %%DATADIR%%/bin/rasscf.exe %%DATADIR%%/bin/rassi.exe %%DATADIR%%/bin/rhodyn.exe %%DATADIR%%/bin/rpa.exe %%DATADIR%%/bin/scf.exe %%DATADIR%%/bin/seward.exe %%DATADIR%%/bin/single_aniso.exe %%DATADIR%%/bin/slapaf.exe %%DATADIR%%/bin/surfacehop.exe +%%DATADIR%%/bin/symmetrize.exe %%DATADIR%%/bin/vibrot.exe %%DATADIR%%/data/MolGUI.prgm %%DATADIR%%/data/abdata %%DATADIR%%/data/alaska.prgm %%DATADIR%%/data/averd.prgm %%DATADIR%%/data/banner.txt %%DATADIR%%/data/caspt2.prgm %%DATADIR%%/data/casvb.prgm %%DATADIR%%/data/ccsdt.prgm %%DATADIR%%/data/chcc.prgm %%DATADIR%%/data/check.prgm %%DATADIR%%/data/cht3.prgm %%DATADIR%%/data/cpf.prgm %%DATADIR%%/data/dmrgscf.prgm %%DATADIR%%/data/dynamix.prgm %%DATADIR%%/data/espf.prgm %%DATADIR%%/data/expbas.prgm %%DATADIR%%/data/extf.prgm %%DATADIR%%/data/false.prgm %%DATADIR%%/data/ffpt.prgm %%DATADIR%%/data/functionals.txt %%DATADIR%%/data/gateway.prgm %%DATADIR%%/data/genano.prgm %%DATADIR%%/data/global.prgm %%DATADIR%%/data/grid_it.prgm %%DATADIR%%/data/guessorb.prgm %%DATADIR%%/data/guga.prgm %%DATADIR%%/data/gugaci.prgm %%DATADIR%%/data/gugadrt.prgm %%DATADIR%%/data/info.txt %%DATADIR%%/data/inporb_files.prgm %%DATADIR%%/data/inputs.tpl %%DATADIR%%/data/isotope_data.txt %%DATADIR%%/data/keyword.db %%DATADIR%%/data/keyword.xml %%DATADIR%%/data/landing.txt %%DATADIR%%/data/last_energy.prgm %%DATADIR%%/data/localisation.prgm %%DATADIR%%/data/loprop.prgm %%DATADIR%%/data/mbpt2.prgm %%DATADIR%%/data/mckinley.prgm %%DATADIR%%/data/mclr.prgm %%DATADIR%%/data/mcpdft.prgm %%DATADIR%%/data/modalias.txt %%DATADIR%%/data/motra.prgm %%DATADIR%%/data/mpprop.prgm %%DATADIR%%/data/mpssi.prgm %%DATADIR%%/data/mrci.prgm %%DATADIR%%/data/mula.prgm %%DATADIR%%/data/nevpt2.prgm %%DATADIR%%/data/numerical_gradient.prgm %%DATADIR%%/data/poly_aniso.prgm %%DATADIR%%/data/qmstat.prgm %%DATADIR%%/data/quater.prgm %%DATADIR%%/data/rasscf.prgm %%DATADIR%%/data/rassi.prgm %%DATADIR%%/data/rcodes.txt %%DATADIR%%/data/rhodyn.prgm %%DATADIR%%/data/rpa.prgm %%DATADIR%%/data/rysrw %%DATADIR%%/data/scf.prgm %%DATADIR%%/data/seward.prgm %%DATADIR%%/data/single_aniso.prgm %%DATADIR%%/data/slapaf.prgm %%DATADIR%%/data/surfacehop.prgm %%DATADIR%%/data/symmetrize.prgm %%DATADIR%%/data/vibrot.prgm %%DATADIR%%/data/wfa.prgm %%DATADIR%%/molcas.rte %%DATADIR%%/pymolcas %%DATADIR%%/sbin/help_basis %%DATADIR%%/sbin/help_doc %%DATADIR%%/sbin/help_func %%DATADIR%%/sbin/setup %%DATADIR%%/sbin/version