diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile index 394d9b71e894..2498ae7421df 100644 --- a/biology/bcftools/Makefile +++ b/biology/bcftools/Makefile @@ -1,61 +1,60 @@ # Created by: Reed A. Cartwright PORTNAME= bcftools -PORTVERSION= 1.14 -PORTREVISION= 1 +PORTVERSION= 1.15 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Tools for manipulating next-generation sequencing data LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash RUN_DEPENDS= bash:shells/bash USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GH_ACCOUNT= samtools GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl OPTIONS_DEFINE= GPL GPL_DESC= Enable modules that rely on GPL code OPTIONS_DEFAULT= GPL GPL_LIB_DEPENDS= libgsl.so:math/gsl .include .if ${PORT_OPTIONS:MGPL} MAKE_ENV+= USE_GPL=1 LICENSE+= GPLv3 LICENSE_COMB= multi .endif TEST_TARGET= test pre-configure: @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \ ${WRKSRC}/configure.ac post-install: ${MV} ${STAGEDIR}${PREFIX}/bin/color-chrs.pl \ ${STAGEDIR}${PREFIX}/bin/color-chrs ${MV} ${STAGEDIR}${PREFIX}/bin/guess-ploidy.py\ ${STAGEDIR}${PREFIX}/bin/guess-ploidy ${MV} /${STAGEDIR}${PREFIX}/bin/plot-roh.py \ ${STAGEDIR}${PREFIX}/bin/plot-roh ${MV} ${STAGEDIR}${PREFIX}/bin/run-roh.pl \ ${STAGEDIR}${PREFIX}/bin/run-roh ${MV} ${STAGEDIR}${PREFIX}/bin/vcfutils.pl \ ${STAGEDIR}${PREFIX}/bin/vcfutils ${MV} ${STAGEDIR}${PREFIX}/bin/plot-vcfstats \ ${STAGEDIR}${PREFIX}/bin/ .include diff --git a/biology/bcftools/distinfo b/biology/bcftools/distinfo index 3963175133e2..7f2539d1f09b 100644 --- a/biology/bcftools/distinfo +++ b/biology/bcftools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1639849304 -SHA256 (samtools-bcftools-1.14_GH0.tar.gz) = c9a814b1f0a13af19b45283f039d01b524e011d870ac95cd92e6907c3d1db6d1 -SIZE (samtools-bcftools-1.14_GH0.tar.gz) = 3326994 +TIMESTAMP = 1645831748 +SHA256 (samtools-bcftools-1.15_GH0.tar.gz) = 6b263270c62b156d2604150ca7e64b06a80282e049759b2668de24cbce1b1946 +SIZE (samtools-bcftools-1.15_GH0.tar.gz) = 3347901