diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile
index 4e28a9fa5de4..d7c5d7521b9f 100644
--- a/science/py-phonopy/Makefile
+++ b/science/py-phonopy/Makefile
@@ -1,30 +1,30 @@
 PORTNAME=	phonopy
-DISTVERSION=	2.12.0
+DISTVERSION=	2.13.1
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package for phonon calculations at harmonic and quasi-harmonic levels
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 PY_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR}
 BUILD_DEPENDS=	${PY_DEPENDS}
 RUN_DEPENDS=	${PY_DEPENDS}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}hiphive>0:science/py-hiphive@${PY_FLAVOR}
 
 USES=		python:3.7+
 USE_PYTHON=	distutils cython autoplist
 
 do-test:
 	@cd ${WRKSRC} && \
 		${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} test
 
 .include <bsd.port.mk>
diff --git a/science/py-phonopy/distinfo b/science/py-phonopy/distinfo
index b7c8218377e1..7547385954da 100644
--- a/science/py-phonopy/distinfo
+++ b/science/py-phonopy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1642198039
-SHA256 (phonopy-2.12.0.tar.gz) = ff65065f418ccbff9fbc1186b9a65581e83b42789aa4a656f45badfff9bd3f61
-SIZE (phonopy-2.12.0.tar.gz) = 3362158
+TIMESTAMP = 1646021052
+SHA256 (phonopy-2.13.1.tar.gz) = 0fba41b5c31bc4ca6de1725560392c9510d4e14ca4f3702d6c8233b546e38ba0
+SIZE (phonopy-2.13.1.tar.gz) = 3363941