diff --git a/biology/bcf-score/Makefile b/biology/bcf-score/Makefile index 0436c4b14f2d..bd2d2610e27e 100644 --- a/biology/bcf-score/Makefile +++ b/biology/bcf-score/Makefile @@ -1,60 +1,60 @@ PORTNAME= bcf-score DISTVERSION= 1.20 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= https://software.broadinstitute.org/software/score/ # Get this right, or ports will download bcftools in it's place via tuple DISTFILES+= score_${DISTVERSION}-20240505.tar.gz MAINTAINER= jwb@FreeBSD.org COMMENT= Bcftools plugins for GWAS-VCF summary statistics files WWW= https://software.broadinstitute.org/software/score/ LICENSE= MIT -BUILD_DEPENDS= htslib>=1.21:biology/htslib +BUILD_DEPENDS= htslib>=1.22:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib libcholmod.so:math/suitesparse-cholmod TEST_DEPENDS= bash:shells/bash RUN_DEPENDS= bash:shells/bash bcftools>=${PORTVERSION}:biology/bcftools USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GH_ACCOUNT= samtools GH_PROJECT= bcftools -GH_TAGNAME= 1.21 +GH_TAGNAME= 1.22 GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl # From pgs.mk CFLAGS+= -isystem ${LOCALBASE}/include/suitesparse LDFLAGS+= -lcholmod pre-configure: @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \ ${WRKSRC}/configure.ac post-extract: @${CP} ${WRKDIR}/*.c ${WRKDIR}/*.h ${WRKSRC}/plugins @${MKDIR} ${WRKSRC}/bcf-score @${CP} ${WRKDIR}/*.R ${WRKSRC}/bcf-score # One .so for each .c in the score distfile do-install: ${MKDIR} ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/blup.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/liftover.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/metal.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/munge.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/pgs.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/score.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools (cd ${WRKSRC}/bcf-score && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}) .include diff --git a/biology/bcf-score/distinfo b/biology/bcf-score/distinfo index fb0644c4567b..724198c182f2 100644 --- a/biology/bcf-score/distinfo +++ b/biology/bcf-score/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1727475307 +TIMESTAMP = 1750428714 SHA256 (score_1.20-20240505.tar.gz) = c2ac510f0a48e3d2e61d1a9e219e030b1268cdcf3bf987217bbd16740d962d41 SIZE (score_1.20-20240505.tar.gz) = 96852 -SHA256 (samtools-bcftools-1.20-1.21_GH0.tar.gz) = 7484695c5d833fb1a89c2b886ec302db0514ba3c8e5ef7397b9302fa8bd37f8d -SIZE (samtools-bcftools-1.20-1.21_GH0.tar.gz) = 3665160 +SHA256 (samtools-bcftools-1.20-1.22_GH0.tar.gz) = 1608e547daf7bd5ab7d52dea57019f57da3fdfb29bc26dece1e8d01a999a9a2d +SIZE (samtools-bcftools-1.20-1.22_GH0.tar.gz) = 3751342