diff --git a/biology/seqwish/Makefile b/biology/seqwish/Makefile index f2391fbff1f3..6b6b027f9103 100644 --- a/biology/seqwish/Makefile +++ b/biology/seqwish/Makefile @@ -1,37 +1,25 @@ PORTNAME= seqwish DISTVERSIONPREFIX= v -DISTVERSION= 0.7.11 -PORTREVISION= 2 +DISTVERSION= 0.7.12 CATEGORIES= biology -MASTER_SITES= https://github.com/ekg/seqwish/releases/download/v${DISTVERSION}/ +MASTER_SITES= https://github.com/pangenome/seqwish/releases/download/v${DISTVERSION}/ +DISTFILES= seqwish-v0.7.12.tar.gz MAINTAINER= yuri@FreeBSD.org COMMENT= Alignment to variation graph inducer -WWW= https://github.com/ekg/seqwish +WWW= https://github.com/pangenome/seqwish LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -LIB_DEPENDS= libsdsl.so:devel/sdsl-lite +LIB_DEPENDS= libzstd.so:archivers/zstd -USES= cmake:noninja compiler:c++14-lang pkgconfig +USES= cargo pkgconfig -CMAKE_ARGS= -DEXTRA_FLAGS="" # disable -march=native +WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION} PLIST_FILES= bin/${PORTNAME} -OPTIONS_DEFINE= OPENMP -.if exists(/usr/include/omp.h) -OPTIONS_DEFAULT= OPENMP -.else -OPENMP_BROKEN= OpenMP isn't available on this architecture -.endif - -OPENMP_CMAKE_BOOL= USE_OPENMP -OPENMP_CXXFLAGS= -fopenmp -OPENMP_BROKEN_OFF= https://github.com/ekg/seqwish/issues/114 - -post-extract: - @${RM} -r ${WRKSRC}/deps/sdsl-lite +# tests as of 0.7.12: test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s .include diff --git a/biology/seqwish/Makefile.crates b/biology/seqwish/Makefile.crates new file mode 100644 index 000000000000..92e6e0e2c93e --- /dev/null +++ b/biology/seqwish/Makefile.crates @@ -0,0 +1,166 @@ +CARGO_CRATES= adler2-2.0.1 \ + ahash-0.8.12 \ + aho-corasick-1.1.4 \ + allocator-api2-0.2.21 \ + anes-0.1.6 \ + anstream-1.0.0 \ + anstyle-1.0.14 \ + anstyle-parse-1.0.0 \ + anstyle-query-1.1.5 \ + anstyle-wincon-3.0.11 \ + anyhow-1.0.104 \ + arbitrary-chunks-0.4.1 \ + autocfg-1.5.1 \ + bincode-1.3.3 \ + bitflags-2.13.1 \ + bitvec-1.1.1 \ + block-buffer-0.10.4 \ + block-pseudorand-0.1.2 \ + bumpalo-3.20.3 \ + byteorder-1.5.0 \ + cast-0.3.0 \ + cbindgen-0.27.0 \ + cc-1.3.0 \ + cfg-if-1.0.4 \ + chiapos-chacha8-0.1.0 \ + ciborium-0.2.2 \ + ciborium-io-0.2.2 \ + ciborium-ll-0.2.2 \ + clap-4.6.4 \ + clap_builder-4.6.2 \ + clap_derive-4.6.4 \ + clap_lex-1.1.0 \ + colorchoice-1.0.5 \ + cpufeatures-0.2.17 \ + crc32fast-1.5.0 \ + criterion-0.5.1 \ + criterion-plot-0.5.0 \ + crossbeam-0.8.4 \ + crossbeam-channel-0.5.16 \ + crossbeam-deque-0.8.7 \ + crossbeam-epoch-0.9.20 \ + crossbeam-queue-0.3.13 \ + crossbeam-utils-0.8.22 \ + crunchy-0.2.4 \ + crypto-common-0.1.7 \ + dashmap-6.2.1 \ + digest-0.10.7 \ + either-1.16.0 \ + equivalent-1.0.2 \ + errno-0.3.14 \ + fastrand-2.5.0 \ + find-msvc-tools-0.1.9 \ + flate2-1.1.9 \ + fm-index-0.3.1 \ + funty-2.0.0 \ + futures-core-0.3.33 \ + futures-task-0.3.33 \ + futures-util-0.3.33 \ + generic-array-0.14.7 \ + getrandom-0.3.4 \ + getrandom-0.4.3 \ + half-2.7.1 \ + hashbrown-0.14.5 \ + hashbrown-0.17.1 \ + heck-0.4.1 \ + heck-0.5.0 \ + hermit-abi-0.5.2 \ + iitree-rs-0.1.1 \ + indexmap-2.14.0 \ + is-terminal-0.4.17 \ + is_terminal_polyfill-1.70.2 \ + itertools-0.10.5 \ + itoa-1.0.18 \ + jobserver-0.1.35 \ + js-sys-0.3.103 \ + libc-0.2.189 \ + linux-raw-sys-0.12.1 \ + lock_api-0.4.14 \ + log-0.4.33 \ + memchr-2.8.3 \ + memmap2-0.9.11 \ + miniz_oxide-0.8.9 \ + nanorand-0.6.1 \ + num-traits-0.2.19 \ + num_cpus-1.17.0 \ + once_cell-1.21.4 \ + once_cell_polyfill-1.70.2 \ + oorandom-11.1.5 \ + parking_lot-0.12.5 \ + parking_lot_core-0.9.12 \ + partition-0.1.2 \ + pin-project-lite-0.2.17 \ + pkg-config-0.3.33 \ + plotters-0.3.7 \ + plotters-backend-0.3.7 \ + plotters-svg-0.3.7 \ + portable-atomic-1.14.0 \ + proc-macro2-1.0.107 \ + quote-1.0.47 \ + r-efi-5.3.0 \ + r-efi-6.0.0 \ + radium-0.7.0 \ + rayon-1.12.0 \ + rayon-core-1.13.0 \ + rdst-0.20.14 \ + redox_syscall-0.5.18 \ + regex-1.13.1 \ + regex-automata-0.4.16 \ + regex-syntax-0.8.11 \ + rustc-hash-2.1.3 \ + rustix-1.1.4 \ + rustversion-1.0.23 \ + same-file-1.0.6 \ + scopeguard-1.2.0 \ + serde-1.0.229 \ + serde_core-1.0.229 \ + serde_derive-1.0.229 \ + serde_json-1.0.151 \ + serde_spanned-0.6.9 \ + sha2-0.10.9 \ + shlex-2.0.1 \ + simd-adler32-0.3.10 \ + slab-0.4.12 \ + smallvec-1.15.2 \ + strsim-0.11.1 \ + sucds-0.8.3 \ + syn-2.0.119 \ + syn-3.0.3 \ + tap-1.0.1 \ + tempfile-3.27.0 \ + thiserror-1.0.69 \ + thiserror-impl-1.0.69 \ + tikv-jemalloc-sys-0.5.4+5.3.0-patched \ + tikv-jemallocator-0.5.4 \ + tinytemplate-1.2.1 \ + toml-0.8.23 \ + toml_datetime-0.6.11 \ + toml_edit-0.22.27 \ + toml_write-0.1.2 \ + typenum-1.20.1 \ + uf_rush-0.1.1 \ + unicode-ident-1.0.24 \ + utf8parse-0.2.2 \ + vers-vecs-1.10.1 \ + version_check-0.9.5 \ + voracious_radix_sort-1.2.0 \ + walkdir-2.5.0 \ + wasip2-1.0.4+wasi-0.2.12 \ + wasm-bindgen-0.2.126 \ + wasm-bindgen-macro-0.2.126 \ + wasm-bindgen-macro-support-0.2.126 \ + wasm-bindgen-shared-0.2.126 \ + web-sys-0.3.103 \ + winapi-util-0.1.11 \ + windows-link-0.2.1 \ + windows-sys-0.61.2 \ + winnow-0.7.15 \ + wit-bindgen-0.57.1 \ + wyz-0.5.1 \ + zerocopy-0.8.55 \ + zerocopy-derive-0.8.55 \ + zmij-1.0.23 \ + zstd-0.13.3 \ + zstd-safe-7.2.4 \ + zstd-sys-2.0.16+zstd.1.5.7 \ + ragc-common,ragc-core@git+https://github.com/AndreaGuarracino/ragc?rev=c2d7ac2f40b80bab7b17b3c038f755f061dd5593\#c2d7ac2f40b80bab7b17b3c038f755f061dd5593 diff --git a/biology/seqwish/distinfo b/biology/seqwish/distinfo index 55eb9c359f86..ceaa0451ba4f 100644 --- a/biology/seqwish/distinfo +++ b/biology/seqwish/distinfo @@ -1,3 +1,335 @@ -TIMESTAMP = 1731123736 -SHA256 (seqwish-v0.7.11.tar.gz) = 9cbf51990787a93c58a1ee04239608785beb7e8a38efeb02929121b3c8c4a103 -SIZE (seqwish-v0.7.11.tar.gz) = 12125014 +TIMESTAMP = 1789171973 +SHA256 (seqwish-v0.7.12.tar.gz) = 41f5f51fd155cfe739ac9e8bdba8c20d0fea453605fb4b8894db20dd26839fff +SIZE (seqwish-v0.7.12.tar.gz) = 20592029 +SHA256 (rust/crates/adler2-2.0.1.crate) = 320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa +SIZE (rust/crates/adler2-2.0.1.crate) = 13366 +SHA256 (rust/crates/ahash-0.8.12.crate) = 5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75 +SIZE (rust/crates/ahash-0.8.12.crate) = 43413 +SHA256 (rust/crates/aho-corasick-1.1.4.crate) = ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301 +SIZE (rust/crates/aho-corasick-1.1.4.crate) = 184015 +SHA256 (rust/crates/allocator-api2-0.2.21.crate) = 683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923 +SIZE (rust/crates/allocator-api2-0.2.21.crate) = 63622 +SHA256 (rust/crates/anes-0.1.6.crate) = 4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299 +SIZE (rust/crates/anes-0.1.6.crate) = 23857 +SHA256 (rust/crates/anstream-1.0.0.crate) = 824a212faf96e9acacdbd09febd34438f8f711fb84e09a8916013cd7815ca28d +SIZE (rust/crates/anstream-1.0.0.crate) = 28916 +SHA256 (rust/crates/anstyle-1.0.14.crate) = 940b3a0ca603d1eade50a4846a2afffd5ef57a9feac2c0e2ec2e14f9ead76000 +SIZE (rust/crates/anstyle-1.0.14.crate) = 17787 +SHA256 (rust/crates/anstyle-parse-1.0.0.crate) = 52ce7f38b242319f7cabaa6813055467063ecdc9d355bbb4ce0c68908cd8130e +SIZE (rust/crates/anstyle-parse-1.0.0.crate) = 22042 +SHA256 (rust/crates/anstyle-query-1.1.5.crate) = 40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc +SIZE (rust/crates/anstyle-query-1.1.5.crate) = 10264 +SHA256 (rust/crates/anstyle-wincon-3.0.11.crate) = 291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d +SIZE (rust/crates/anstyle-wincon-3.0.11.crate) = 12638 +SHA256 (rust/crates/anyhow-1.0.104.crate) = 330a5ed07fa54e4702c9d6c4174f74427fc0ef6e214bbd677ae50a5099946470 +SIZE (rust/crates/anyhow-1.0.104.crate) = 48819 +SHA256 (rust/crates/arbitrary-chunks-0.4.1.crate) = 2ad8689a486416c401ea15715a4694de30054248ec627edbf31f49cb64ee4086 +SIZE (rust/crates/arbitrary-chunks-0.4.1.crate) = 8209 +SHA256 (rust/crates/autocfg-1.5.1.crate) = f2032f911046de80f0a198e0901378627c33f59ea0ac00e363d481118bd70a53 +SIZE (rust/crates/autocfg-1.5.1.crate) = 18911 +SHA256 (rust/crates/bincode-1.3.3.crate) = b1f45e9417d87227c7a56d22e471c6206462cba514c7590c09aff4cf6d1ddcad +SIZE (rust/crates/bincode-1.3.3.crate) = 28958 +SHA256 (rust/crates/bitflags-2.13.1.crate) = b588b76d00fde79687d7646a9b5bdf3cc0f655e0bbd080335a95d7e96f3587da +SIZE (rust/crates/bitflags-2.13.1.crate) = 51395 +SHA256 (rust/crates/bitvec-1.1.1.crate) = ddcec3d12c579d40898fe0a9a358a803c23e9c52ca3c425707f81c9436211837 +SIZE (rust/crates/bitvec-1.1.1.crate) = 225850 +SHA256 (rust/crates/block-buffer-0.10.4.crate) = 3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71 +SIZE (rust/crates/block-buffer-0.10.4.crate) = 10538 +SHA256 (rust/crates/block-pseudorand-0.1.2.crate) = 2097358495d244a0643746f4d13eedba4608137008cf9dec54e53a3b700115a6 +SIZE (rust/crates/block-pseudorand-0.1.2.crate) = 6912 +SHA256 (rust/crates/bumpalo-3.20.3.crate) = 72f5acc6cb2ba439de613abc23857ec3d78374d8ed5ac84e9d11336e87da8649 +SIZE (rust/crates/bumpalo-3.20.3.crate) = 98671 +SHA256 (rust/crates/byteorder-1.5.0.crate) = 1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b +SIZE (rust/crates/byteorder-1.5.0.crate) = 23288 +SHA256 (rust/crates/cast-0.3.0.crate) = 37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5 +SIZE (rust/crates/cast-0.3.0.crate) = 11452 +SHA256 (rust/crates/cbindgen-0.27.0.crate) = 3fce8dd7fcfcbf3a0a87d8f515194b49d6135acab73e18bd380d1d93bb1a15eb +SIZE (rust/crates/cbindgen-0.27.0.crate) = 215957 +SHA256 (rust/crates/cc-1.3.0.crate) = c89588d05638b5b4594a3348a2d6c20277e43a7f5c5202b05cc56888475a47b8 +SIZE (rust/crates/cc-1.3.0.crate) = 97752 +SHA256 (rust/crates/cfg-if-1.0.4.crate) = 9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801 +SIZE (rust/crates/cfg-if-1.0.4.crate) = 9360 +SHA256 (rust/crates/chiapos-chacha8-0.1.0.crate) = 33f8be573a85f6c2bc1b8e43834c07e32f95e489b914bf856c0549c3c269cd0a +SIZE (rust/crates/chiapos-chacha8-0.1.0.crate) = 7246 +SHA256 (rust/crates/ciborium-0.2.2.crate) = 42e69ffd6f0917f5c029256a24d0161db17cea3997d185db0d35926308770f0e +SIZE (rust/crates/ciborium-0.2.2.crate) = 35611 +SHA256 (rust/crates/ciborium-io-0.2.2.crate) = 05afea1e0a06c9be33d539b876f1ce3692f4afea2cb41f740e7743225ed1c757 +SIZE (rust/crates/ciborium-io-0.2.2.crate) = 6697 +SHA256 (rust/crates/ciborium-ll-0.2.2.crate) = 57663b653d948a338bfb3eeba9bb2fd5fcfaecb9e199e87e1eda4d9e8b240fd9 +SIZE (rust/crates/ciborium-ll-0.2.2.crate) = 14695 +SHA256 (rust/crates/clap-4.6.4.crate) = d91e0c145792ef73a6ad36d27c75ac09f1832222a3c209689d90f534685ee5b7 +SIZE (rust/crates/clap-4.6.4.crate) = 63677 +SHA256 (rust/crates/clap_builder-4.6.2.crate) = f09628afdcc538b57f3c6341e9c8e9970f18e4a481690a64974d7023bd33548b +SIZE (rust/crates/clap_builder-4.6.2.crate) = 170802 +SHA256 (rust/crates/clap_derive-4.6.4.crate) = d012d2b9d65aca7f18f4d9878a045bc17899bba951561ba5ec3c2ba1eed9a061 +SIZE (rust/crates/clap_derive-4.6.4.crate) = 33533 +SHA256 (rust/crates/clap_lex-1.1.0.crate) = c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9 +SIZE (rust/crates/clap_lex-1.1.0.crate) = 13470 +SHA256 (rust/crates/colorchoice-1.0.5.crate) = 1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570 +SIZE (rust/crates/colorchoice-1.0.5.crate) = 8187 +SHA256 (rust/crates/cpufeatures-0.2.17.crate) = 59ed5838eebb26a2bb2e58f6d5b5316989ae9d08bab10e0e6d103e656d1b0280 +SIZE (rust/crates/cpufeatures-0.2.17.crate) = 13466 +SHA256 (rust/crates/crc32fast-1.5.0.crate) = 9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511 +SIZE (rust/crates/crc32fast-1.5.0.crate) = 40723 +SHA256 (rust/crates/criterion-0.5.1.crate) = f2b12d017a929603d80db1831cd3a24082f8137ce19c69e6447f54f5fc8d692f +SIZE (rust/crates/criterion-0.5.1.crate) = 110088 +SHA256 (rust/crates/criterion-plot-0.5.0.crate) = 6b50826342786a51a89e2da3a28f1c32b06e387201bc2d19791f622c673706b1 +SIZE (rust/crates/criterion-plot-0.5.0.crate) = 22706 +SHA256 (rust/crates/crossbeam-0.8.4.crate) = 1137cd7e7fc0fb5d3c5a8678be38ec56e819125d8d7907411fe24ccb943faca8 +SIZE (rust/crates/crossbeam-0.8.4.crate) = 10500 +SHA256 (rust/crates/crossbeam-channel-0.5.16.crate) = d85363c37faeca707aef026efa9f3b34d077bce547e48f770770625c6013679e +SIZE (rust/crates/crossbeam-channel-0.5.16.crate) = 93189 +SHA256 (rust/crates/crossbeam-deque-0.8.7.crate) = 5181e0de7b61eb03a81e347d6dd8797bae9da5146707b51077e2d71a54ec0ceb +SIZE (rust/crates/crossbeam-deque-0.8.7.crate) = 24141 +SHA256 (rust/crates/crossbeam-epoch-0.9.20.crate) = 2d6914041f254d6e9176c01941b21115dcfb7089e55135a35411081bd106ef3f +SIZE (rust/crates/crossbeam-epoch-0.9.20.crate) = 47545 +SHA256 (rust/crates/crossbeam-queue-0.3.13.crate) = 803d13fb3b09d88be9f4dbc29062c66b19bf7170867ceb746d2a8689bf6c7a26 +SIZE (rust/crates/crossbeam-queue-0.3.13.crate) = 18407 +SHA256 (rust/crates/crossbeam-utils-0.8.22.crate) = 61803da095bee82a81bb1a452ecc25d3b2f1416d1897eb86430c6159ef717c17 +SIZE (rust/crates/crossbeam-utils-0.8.22.crate) = 46874 +SHA256 (rust/crates/crunchy-0.2.4.crate) = 460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5 +SIZE (rust/crates/crunchy-0.2.4.crate) = 3887 +SHA256 (rust/crates/crypto-common-0.1.7.crate) = 78c8292055d1c1df0cce5d180393dc8cce0abec0a7102adb6c7b1eef6016d60a +SIZE (rust/crates/crypto-common-0.1.7.crate) = 9619 +SHA256 (rust/crates/dashmap-6.2.1.crate) = e6361d5c062261c78a176addb82d4c821ae42bed6089de0e12603cd25de2059c +SIZE (rust/crates/dashmap-6.2.1.crate) = 26885 +SHA256 (rust/crates/digest-0.10.7.crate) = 9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292 +SIZE (rust/crates/digest-0.10.7.crate) = 19557 +SHA256 (rust/crates/either-1.16.0.crate) = 91622ff5e7162018101f2fea40d6ebf4a78bbe5a49736a2020649edf9693679e +SIZE (rust/crates/either-1.16.0.crate) = 21248 +SHA256 (rust/crates/equivalent-1.0.2.crate) = 877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f +SIZE (rust/crates/equivalent-1.0.2.crate) = 7419 +SHA256 (rust/crates/errno-0.3.14.crate) = 39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb +SIZE (rust/crates/errno-0.3.14.crate) = 12002 +SHA256 (rust/crates/fastrand-2.5.0.crate) = da7c62ceae207dd37ea5b845da6a0696c799f85e97da1ab5b7910be3c1c80223 +SIZE (rust/crates/fastrand-2.5.0.crate) = 20782 +SHA256 (rust/crates/find-msvc-tools-0.1.9.crate) = 5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582 +SIZE (rust/crates/find-msvc-tools-0.1.9.crate) = 31493 +SHA256 (rust/crates/flate2-1.1.9.crate) = 843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c +SIZE (rust/crates/flate2-1.1.9.crate) = 82745 +SHA256 (rust/crates/fm-index-0.3.1.crate) = 919bc722dc3c11b2fa742bbeb99f2519fce4031b99304eb6fa2bee087fc69641 +SIZE (rust/crates/fm-index-0.3.1.crate) = 36795 +SHA256 (rust/crates/funty-2.0.0.crate) = e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c +SIZE (rust/crates/funty-2.0.0.crate) = 13160 +SHA256 (rust/crates/futures-core-0.3.33.crate) = 2cd50c473c80f6d7c3670a752354b8e569b1a7cbfdc0419ec88e5edad85e0dc7 +SIZE (rust/crates/futures-core-0.3.33.crate) = 14691 +SHA256 (rust/crates/futures-task-0.3.33.crate) = b231ed28831efb4a61a08580c4bc233ec56bc009f4cd8f52da2c3cb97df0c109 +SIZE (rust/crates/futures-task-0.3.33.crate) = 11381 +SHA256 (rust/crates/futures-util-0.3.33.crate) = a77a90a256fce34da66415271e30f94ee91c57b04b8a2c042d9cf3220179deaa +SIZE (rust/crates/futures-util-0.3.33.crate) = 169725 +SHA256 (rust/crates/generic-array-0.14.7.crate) = 85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a +SIZE (rust/crates/generic-array-0.14.7.crate) = 15950 +SHA256 (rust/crates/getrandom-0.3.4.crate) = 899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd +SIZE (rust/crates/getrandom-0.3.4.crate) = 50932 +SHA256 (rust/crates/getrandom-0.4.3.crate) = 300e883d756b2e4ec94e02791f39b04b522276138852cfc41d9fb7e904106099 +SIZE (rust/crates/getrandom-0.4.3.crate) = 52437 +SHA256 (rust/crates/half-2.7.1.crate) = 6ea2d84b969582b4b1864a92dc5d27cd2b77b622a8d79306834f1be5ba20d84b +SIZE (rust/crates/half-2.7.1.crate) = 61040 +SHA256 (rust/crates/hashbrown-0.14.5.crate) = e5274423e17b7c9fc20b6e7e208532f9b19825d82dfd615708b70edd83df41f1 +SIZE (rust/crates/hashbrown-0.14.5.crate) = 141498 +SHA256 (rust/crates/hashbrown-0.17.1.crate) = ed5909b6e89a2db4456e54cd5f673791d7eca6732202bbf2a9cc504fe2f9b84a +SIZE (rust/crates/hashbrown-0.17.1.crate) = 155512 +SHA256 (rust/crates/heck-0.4.1.crate) = 95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8 +SIZE (rust/crates/heck-0.4.1.crate) = 11567 +SHA256 (rust/crates/heck-0.5.0.crate) = 2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea +SIZE (rust/crates/heck-0.5.0.crate) = 11517 +SHA256 (rust/crates/hermit-abi-0.5.2.crate) = fc0fef456e4baa96da950455cd02c081ca953b141298e41db3fc7e36b1da849c +SIZE (rust/crates/hermit-abi-0.5.2.crate) = 17435 +SHA256 (rust/crates/iitree-rs-0.1.1.crate) = 399554cb12c8c69db5275b2fabdd9c195e86690679baa0b2480b07497101e7d5 +SIZE (rust/crates/iitree-rs-0.1.1.crate) = 10667 +SHA256 (rust/crates/indexmap-2.14.0.crate) = d466e9454f08e4a911e14806c24e16fba1b4c121d1ea474396f396069cf949d9 +SIZE (rust/crates/indexmap-2.14.0.crate) = 104085 +SHA256 (rust/crates/is-terminal-0.4.17.crate) = 3640c1c38b8e4e43584d8df18be5fc6b0aa314ce6ebf51b53313d4306cca8e46 +SIZE (rust/crates/is-terminal-0.4.17.crate) = 7458 +SHA256 (rust/crates/is_terminal_polyfill-1.70.2.crate) = a6cb138bb79a146c1bd460005623e142ef0181e3d0219cb493e02f7d08a35695 +SIZE (rust/crates/is_terminal_polyfill-1.70.2.crate) = 7548 +SHA256 (rust/crates/itertools-0.10.5.crate) = b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473 +SIZE (rust/crates/itertools-0.10.5.crate) = 115354 +SHA256 (rust/crates/itoa-1.0.18.crate) = 8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682 +SIZE (rust/crates/itoa-1.0.18.crate) = 15935 +SHA256 (rust/crates/jobserver-0.1.35.crate) = 1c00acbd29eabad4a2392fa0e921c874934dbbf4194312ad20f04a0ed67a3cb3 +SIZE (rust/crates/jobserver-0.1.35.crate) = 28890 +SHA256 (rust/crates/js-sys-0.3.103.crate) = 53b44bfcdb3f8d5837a46dae1ca9660a837176eee74a28b229bc626816589102 +SIZE (rust/crates/js-sys-0.3.103.crate) = 108366 +SHA256 (rust/crates/libc-0.2.189.crate) = 3eaf3ede3fee6db1a4c2ee091bf8a8b4dccdc6d17f656fb07896ee72867612f2 +SIZE (rust/crates/libc-0.2.189.crate) = 851502 +SHA256 (rust/crates/linux-raw-sys-0.12.1.crate) = 32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53 +SIZE (rust/crates/linux-raw-sys-0.12.1.crate) = 3006116 +SHA256 (rust/crates/lock_api-0.4.14.crate) = 224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965 +SIZE (rust/crates/lock_api-0.4.14.crate) = 29249 +SHA256 (rust/crates/log-0.4.33.crate) = 0ceec5bc11778974d1bcb055b18002eba7f4b3518b6a0081b3af5f21666da9ad +SIZE (rust/crates/log-0.4.33.crate) = 52997 +SHA256 (rust/crates/memchr-2.8.3.crate) = cf8baf1c55e62ffcace7a9f06f4bd9cd3f0c4beb022d3b367256b91b87513d98 +SIZE (rust/crates/memchr-2.8.3.crate) = 99165 +SHA256 (rust/crates/memmap2-0.9.11.crate) = d1219ed1b7f229ee7104d281dd01d6802fe28bb6e95d292942c4daacdeb798c0 +SIZE (rust/crates/memmap2-0.9.11.crate) = 35116 +SHA256 (rust/crates/miniz_oxide-0.8.9.crate) = 1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316 +SIZE (rust/crates/miniz_oxide-0.8.9.crate) = 67132 +SHA256 (rust/crates/nanorand-0.6.1.crate) = 729eb334247daa1803e0a094d0a5c55711b85571179f5ec6e53eccfdf7008958 +SIZE (rust/crates/nanorand-0.6.1.crate) = 11009 +SHA256 (rust/crates/num-traits-0.2.19.crate) = 071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841 +SIZE (rust/crates/num-traits-0.2.19.crate) = 51631 +SHA256 (rust/crates/num_cpus-1.17.0.crate) = 91df4bbde75afed763b708b7eee1e8e7651e02d97f6d5dd763e89367e957b23b +SIZE (rust/crates/num_cpus-1.17.0.crate) = 15874 +SHA256 (rust/crates/once_cell-1.21.4.crate) = 9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50 +SIZE (rust/crates/once_cell-1.21.4.crate) = 35010 +SHA256 (rust/crates/once_cell_polyfill-1.70.2.crate) = 384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe +SIZE (rust/crates/once_cell_polyfill-1.70.2.crate) = 7448 +SHA256 (rust/crates/oorandom-11.1.5.crate) = d6790f58c7ff633d8771f42965289203411a5e5c68388703c06e14f24770b41e +SIZE (rust/crates/oorandom-11.1.5.crate) = 23750 +SHA256 (rust/crates/parking_lot-0.12.5.crate) = 93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a +SIZE (rust/crates/parking_lot-0.12.5.crate) = 46735 +SHA256 (rust/crates/parking_lot_core-0.9.12.crate) = 2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1 +SIZE (rust/crates/parking_lot_core-0.9.12.crate) = 34110 +SHA256 (rust/crates/partition-0.1.2.crate) = 947f833aaa585cf12b8ec7c0476c98784c49f33b861376ffc84ed92adebf2aba +SIZE (rust/crates/partition-0.1.2.crate) = 8400 +SHA256 (rust/crates/pin-project-lite-0.2.17.crate) = a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd +SIZE (rust/crates/pin-project-lite-0.2.17.crate) = 31034 +SHA256 (rust/crates/pkg-config-0.3.33.crate) = 19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e +SIZE (rust/crates/pkg-config-0.3.33.crate) = 21590 +SHA256 (rust/crates/plotters-0.3.7.crate) = 5aeb6f403d7a4911efb1e33402027fc44f29b5bf6def3effcc22d7bb75f2b747 +SIZE (rust/crates/plotters-0.3.7.crate) = 149031 +SHA256 (rust/crates/plotters-backend-0.3.7.crate) = df42e13c12958a16b3f7f4386b9ab1f3e7933914ecea48da7139435263a4172a +SIZE (rust/crates/plotters-backend-0.3.7.crate) = 13709 +SHA256 (rust/crates/plotters-svg-0.3.7.crate) = 51bae2ac328883f7acdfea3d66a7c35751187f870bc81f94563733a154d7a670 +SIZE (rust/crates/plotters-svg-0.3.7.crate) = 6715 +SHA256 (rust/crates/portable-atomic-1.14.0.crate) = 3d20d5497ef88037a52ff98267d066e7f11fcc5e99bbfbd58a42336193aacec3 +SIZE (rust/crates/portable-atomic-1.14.0.crate) = 200703 +SHA256 (rust/crates/proc-macro2-1.0.107.crate) = 985e7ec9bb745e6ce6535b544d84d6cd6f7ad8bd711c398938ae983b91a766d9 +SIZE (rust/crates/proc-macro2-1.0.107.crate) = 59588 +SHA256 (rust/crates/quote-1.0.47.crate) = 1fbf4db142a473a8d80c26bbf18454ed458bf8d26c8219c331daecfdbd079001 +SIZE (rust/crates/quote-1.0.47.crate) = 31622 +SHA256 (rust/crates/r-efi-5.3.0.crate) = 69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f +SIZE (rust/crates/r-efi-5.3.0.crate) = 64532 +SHA256 (rust/crates/r-efi-6.0.0.crate) = f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf +SIZE (rust/crates/r-efi-6.0.0.crate) = 65303 +SHA256 (rust/crates/radium-0.7.0.crate) = dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09 +SIZE (rust/crates/radium-0.7.0.crate) = 10906 +SHA256 (rust/crates/rayon-1.12.0.crate) = fb39b166781f92d482534ef4b4b1b2568f42613b53e5b6c160e24cfbfa30926d +SIZE (rust/crates/rayon-1.12.0.crate) = 183391 +SHA256 (rust/crates/rayon-core-1.13.0.crate) = 22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91 +SIZE (rust/crates/rayon-core-1.13.0.crate) = 73151 +SHA256 (rust/crates/rdst-0.20.14.crate) = 6e7970b4e577b76a96d5e56b5f6662b66d1a4e1f5bb026ee118fc31b373c2752 +SIZE (rust/crates/rdst-0.20.14.crate) = 38782 +SHA256 (rust/crates/redox_syscall-0.5.18.crate) = ed2bf2547551a7053d6fdfafda3f938979645c44812fbfcda098faae3f1a362d +SIZE (rust/crates/redox_syscall-0.5.18.crate) = 30747 +SHA256 (rust/crates/regex-1.13.1.crate) = f020237b6c8eed93db2e2cb53c00c60a8e1bc73da7d073199a1180401450218d +SIZE (rust/crates/regex-1.13.1.crate) = 157118 +SHA256 (rust/crates/regex-automata-0.4.16.crate) = 8fcfdb36bda0c880c5931cdc7a2bcdc8ba4556847b9d912bca70bc94708711ad +SIZE (rust/crates/regex-automata-0.4.16.crate) = 627556 +SHA256 (rust/crates/regex-syntax-0.8.11.crate) = d6f6ff9a378485b298a5286656da665ba74413d36db0979633275d2e708145d4 +SIZE (rust/crates/regex-syntax-0.8.11.crate) = 359055 +SHA256 (rust/crates/rustc-hash-2.1.3.crate) = 6b1e7f9a428571be2dc5bc0505c13fb6bf936822b894ec87abf8a08a4e51742d +SIZE (rust/crates/rustc-hash-2.1.3.crate) = 14811 +SHA256 (rust/crates/rustix-1.1.4.crate) = b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190 +SIZE (rust/crates/rustix-1.1.4.crate) = 425241 +SHA256 (rust/crates/rustversion-1.0.23.crate) = cf54715a573b99ac80df0bc206da022bcd442c974952c7b9720069370852e21f +SIZE (rust/crates/rustversion-1.0.23.crate) = 21013 +SHA256 (rust/crates/same-file-1.0.6.crate) = 93fc1dc3aaa9bfed95e02e6eadabb4baf7e3078b0bd1b4d7b6b0b68378900502 +SIZE (rust/crates/same-file-1.0.6.crate) = 10183 +SHA256 (rust/crates/scopeguard-1.2.0.crate) = 94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49 +SIZE (rust/crates/scopeguard-1.2.0.crate) = 11619 +SHA256 (rust/crates/serde-1.0.229.crate) = 4148590afebada386688f18773da617792bf2ef03ffc1e4cbd2b1d45b023e0ba +SIZE (rust/crates/serde-1.0.229.crate) = 83669 +SHA256 (rust/crates/serde_core-1.0.229.crate) = 67dca2c9c51e58a4791a4b1ed58308b39c64224d349a935ab5039aa360942a48 +SIZE (rust/crates/serde_core-1.0.229.crate) = 63100 +SHA256 (rust/crates/serde_derive-1.0.229.crate) = e7a5d71263a5a7d47b41f6b3f06ba276f10cc18b0931f1799f710578e2309348 +SIZE (rust/crates/serde_derive-1.0.229.crate) = 59864 +SHA256 (rust/crates/serde_json-1.0.151.crate) = c841b55ecdae098c80dcae9cf767f6f8a0c2cdb3416bbef72181df4d0fe73f14 +SIZE (rust/crates/serde_json-1.0.151.crate) = 156556 +SHA256 (rust/crates/serde_spanned-0.6.9.crate) = bf41e0cfaf7226dca15e8197172c295a782857fcb97fad1808a166870dee75a3 +SIZE (rust/crates/serde_spanned-0.6.9.crate) = 10210 +SHA256 (rust/crates/sha2-0.10.9.crate) = a7507d819769d01a365ab707794a4084392c824f54a7a6a7862f8c3d0892b283 +SIZE (rust/crates/sha2-0.10.9.crate) = 29271 +SHA256 (rust/crates/shlex-2.0.1.crate) = f8fadd59c855ef2080decdef8ff161eb6661b86933c9d82e5ba29dc602a55aba +SIZE (rust/crates/shlex-2.0.1.crate) = 19332 +SHA256 (rust/crates/simd-adler32-0.3.10.crate) = 3a219298ac11a56ea9a6d2120044824d6f01aeb034955e7af7bc16858527deea +SIZE (rust/crates/simd-adler32-0.3.10.crate) = 18760 +SHA256 (rust/crates/slab-0.4.12.crate) = 0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5 +SIZE (rust/crates/slab-0.4.12.crate) = 19080 +SHA256 (rust/crates/smallvec-1.15.2.crate) = 8ed6a63f02c8539c91a8685a86f4099661ba3da017932f6ebbea6de3f0fa7c90 +SIZE (rust/crates/smallvec-1.15.2.crate) = 34899 +SHA256 (rust/crates/strsim-0.11.1.crate) = 7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f +SIZE (rust/crates/strsim-0.11.1.crate) = 14266 +SHA256 (rust/crates/sucds-0.8.3.crate) = cd324eaa05be64f105ea5269bb8aabd70e5dd57fa5c673b167f451b07d6c0dcd +SIZE (rust/crates/sucds-0.8.3.crate) = 44525 +SHA256 (rust/crates/syn-2.0.119.crate) = 872831b642d1a07999a962a351ed35b955ea2cfc8f3862091e2a240a84f17297 +SIZE (rust/crates/syn-2.0.119.crate) = 307407 +SHA256 (rust/crates/syn-3.0.3.crate) = 53e9bae58849f64dfa4f5d5ae372c8341f7305f82a3868709269343628b659a3 +SIZE (rust/crates/syn-3.0.3.crate) = 312999 +SHA256 (rust/crates/tap-1.0.1.crate) = 55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369 +SIZE (rust/crates/tap-1.0.1.crate) = 11316 +SHA256 (rust/crates/tempfile-3.27.0.crate) = 32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd +SIZE (rust/crates/tempfile-3.27.0.crate) = 44780 +SHA256 (rust/crates/thiserror-1.0.69.crate) = b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52 +SIZE (rust/crates/thiserror-1.0.69.crate) = 22198 +SHA256 (rust/crates/thiserror-impl-1.0.69.crate) = 4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1 +SIZE (rust/crates/thiserror-impl-1.0.69.crate) = 18365 +SHA256 (rust/crates/tikv-jemalloc-sys-0.5.4+5.3.0-patched.crate) = 9402443cb8fd499b6f327e40565234ff34dbda27460c5b47db0db77443dd85d1 +SIZE (rust/crates/tikv-jemalloc-sys-0.5.4+5.3.0-patched.crate) = 884765 +SHA256 (rust/crates/tikv-jemallocator-0.5.4.crate) = 965fe0c26be5c56c94e38ba547249074803efd52adfb66de62107d95aab3eaca +SIZE (rust/crates/tikv-jemallocator-0.5.4.crate) = 13101 +SHA256 (rust/crates/tinytemplate-1.2.1.crate) = be4d6b5f19ff7664e8c98d03e2139cb510db9b0a60b55f8e8709b689d939b6bc +SIZE (rust/crates/tinytemplate-1.2.1.crate) = 26490 +SHA256 (rust/crates/toml-0.8.23.crate) = dc1beb996b9d83529a9e75c17a1686767d148d70663143c7854d8b4a09ced362 +SIZE (rust/crates/toml-0.8.23.crate) = 36050 +SHA256 (rust/crates/toml_datetime-0.6.11.crate) = 22cddaf88f4fbc13c51aebbf5f8eceb5c7c5a9da2ac40a13519eb5b0a0e8f11c +SIZE (rust/crates/toml_datetime-0.6.11.crate) = 16125 +SHA256 (rust/crates/toml_edit-0.22.27.crate) = 41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a +SIZE (rust/crates/toml_edit-0.22.27.crate) = 78602 +SHA256 (rust/crates/toml_write-0.1.2.crate) = 5d99f8c9a7727884afe522e9bd5edbfc91a3312b36a77b5fb8926e4c31a41801 +SIZE (rust/crates/toml_write-0.1.2.crate) = 15660 +SHA256 (rust/crates/typenum-1.20.1.crate) = b6f5e870be6c3b371b77fe0ee0bafb859fa4964b4404c27de1d380043c4dda20 +SIZE (rust/crates/typenum-1.20.1.crate) = 105479 +SHA256 (rust/crates/uf_rush-0.1.1.crate) = 8337df5fb62e7ee6aede626db43966bbd54ea8c797f830427fa55b3837455da3 +SIZE (rust/crates/uf_rush-0.1.1.crate) = 6752 +SHA256 (rust/crates/unicode-ident-1.0.24.crate) = e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75 +SIZE (rust/crates/unicode-ident-1.0.24.crate) = 49298 +SHA256 (rust/crates/utf8parse-0.2.2.crate) = 06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821 +SIZE (rust/crates/utf8parse-0.2.2.crate) = 13499 +SHA256 (rust/crates/vers-vecs-1.10.1.crate) = cc0435d0e97f854c537ab74e86072e1389c73251eba2cf46069edadd72d0e860 +SIZE (rust/crates/vers-vecs-1.10.1.crate) = 109203 +SHA256 (rust/crates/version_check-0.9.5.crate) = 0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a +SIZE (rust/crates/version_check-0.9.5.crate) = 15554 +SHA256 (rust/crates/voracious_radix_sort-1.2.0.crate) = 446e7ffcb6c27a71d05af7e51ef2ee5b71c48424b122a832f2439651e1914899 +SIZE (rust/crates/voracious_radix_sort-1.2.0.crate) = 291826 +SHA256 (rust/crates/walkdir-2.5.0.crate) = 29790946404f91d9c5d06f9874efddea1dc06c5efe94541a7d6863108e3a5e4b +SIZE (rust/crates/walkdir-2.5.0.crate) = 23951 +SHA256 (rust/crates/wasip2-1.0.4+wasi-0.2.12.crate) = b67efb37e106e55ce722a510d6b5f9c17f083e5fc79afc2badeb12cc313d9487 +SIZE (rust/crates/wasip2-1.0.4+wasi-0.2.12.crate) = 135311 +SHA256 (rust/crates/wasm-bindgen-0.2.126.crate) = 4b067c0c11094aef6b7a801c1e34a26affafdf3d051dba08456b868789aaf9a4 +SIZE (rust/crates/wasm-bindgen-0.2.126.crate) = 67461 +SHA256 (rust/crates/wasm-bindgen-macro-0.2.126.crate) = 167ce5e579f6bcf889c4f7175a8a5a585de84e8ff93976ce393efa5f2837aab1 +SIZE (rust/crates/wasm-bindgen-macro-0.2.126.crate) = 9303 +SHA256 (rust/crates/wasm-bindgen-macro-support-0.2.126.crate) = f3997c7839262f4ef12cf90b818d6340c18e80f263f1a94bf157d0ec4420380e +SIZE (rust/crates/wasm-bindgen-macro-support-0.2.126.crate) = 82688 +SHA256 (rust/crates/wasm-bindgen-shared-0.2.126.crate) = dc1b4cb0cc549fcf58d7dfc081778139b3d283a081644e833e84682ad71cea24 +SIZE (rust/crates/wasm-bindgen-shared-0.2.126.crate) = 11287 +SHA256 (rust/crates/web-sys-0.3.103.crate) = 8622dcb61c0bcc9fffa6938bed81210af2da9a7e4a1a834b2e37a59b6dfb6141 +SIZE (rust/crates/web-sys-0.3.103.crate) = 675560 +SHA256 (rust/crates/winapi-util-0.1.11.crate) = c2a7b1c03c876122aa43f3020e6c3c3ee5c05081c9a00739faf7503aeba10d22 +SIZE (rust/crates/winapi-util-0.1.11.crate) = 13368 +SHA256 (rust/crates/windows-link-0.2.1.crate) = f0805222e57f7521d6a62e36fa9163bc891acd422f971defe97d64e70d0a4fe5 +SIZE (rust/crates/windows-link-0.2.1.crate) = 6133 +SHA256 (rust/crates/windows-sys-0.61.2.crate) = ae137229bcbd6cdf0f7b80a31df61766145077ddf49416a728b02cb3921ff3fc +SIZE (rust/crates/windows-sys-0.61.2.crate) = 2517186 +SHA256 (rust/crates/winnow-0.7.15.crate) = df79d97927682d2fd8adb29682d1140b343be4ac0f08fd68b7765d9c059d3945 +SIZE (rust/crates/winnow-0.7.15.crate) = 187092 +SHA256 (rust/crates/wit-bindgen-0.57.1.crate) = 1ebf944e87a7c253233ad6766e082e3cd714b5d03812acc24c318f549614536e +SIZE (rust/crates/wit-bindgen-0.57.1.crate) = 71227 +SHA256 (rust/crates/wyz-0.5.1.crate) = 05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed +SIZE (rust/crates/wyz-0.5.1.crate) = 18790 +SHA256 (rust/crates/zerocopy-0.8.55.crate) = b5a105cd7b140f6eeec8acff2ea38135d3cab283ada58540f629fe51e46696eb +SIZE (rust/crates/zerocopy-0.8.55.crate) = 284957 +SHA256 (rust/crates/zerocopy-derive-0.8.55.crate) = 0fe976fb70c78cd64cccfe3a6fc142244e8a77b70959b30faf9d0ac37ee228eb +SIZE (rust/crates/zerocopy-derive-0.8.55.crate) = 103316 +SHA256 (rust/crates/zmij-1.0.23.crate) = 29666d0abbfad1e3dc4dcf6144730dd3a3ab225bbbdac83319345b1b44ccfc1b +SIZE (rust/crates/zmij-1.0.23.crate) = 28612 +SHA256 (rust/crates/zstd-0.13.3.crate) = e91ee311a569c327171651566e07972200e76fcfe2242a4fa446149a3881c08a +SIZE (rust/crates/zstd-0.13.3.crate) = 30514 +SHA256 (rust/crates/zstd-safe-7.2.4.crate) = 8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d +SIZE (rust/crates/zstd-safe-7.2.4.crate) = 29350 +SHA256 (rust/crates/zstd-sys-2.0.16+zstd.1.5.7.crate) = 91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748 +SIZE (rust/crates/zstd-sys-2.0.16+zstd.1.5.7.crate) = 775620 +SHA256 (AndreaGuarracino-ragc-c2d7ac2f40b80bab7b17b3c038f755f061dd5593_GH0.tar.gz) = 16f18572d546052b850d422e1c08cc162106e64e44ffee5f148aac9e39e1caae +SIZE (AndreaGuarracino-ragc-c2d7ac2f40b80bab7b17b3c038f755f061dd5593_GH0.tar.gz) = 310972 diff --git a/biology/seqwish/files/patch-CMakeLists.txt b/biology/seqwish/files/patch-CMakeLists.txt deleted file mode 100644 index 1c3e0fd7147d..000000000000 --- a/biology/seqwish/files/patch-CMakeLists.txt +++ /dev/null @@ -1,56 +0,0 @@ -# unbundle sdsl-lite - ---- CMakeLists.txt.orig 2023-04-19 15:25:32 UTC -+++ CMakeLists.txt -@@ -79,18 +79,15 @@ include_directories("${PROJECT_SOURCE_DIR}") - # Add external projects - include(${CMAKE_ROOT}/Modules/ExternalProject.cmake) - --# sdsl-lite (full build using its cmake config) --ExternalProject_Add(sdsl-lite -- SOURCE_DIR "${CMAKE_SOURCE_DIR}/deps/sdsl-lite" -- CMAKE_ARGS "${CMAKE_ARGS};-DCMAKE_INSTALL_PREFIX=" -- UPDATE_COMMAND "" -- INSTALL_COMMAND "") --ExternalProject_Get_property(sdsl-lite INSTALL_DIR) --set(sdsl-lite_INCLUDE "${INSTALL_DIR}/src/sdsl-lite-build/include") --set(sdsl-lite-divsufsort_INCLUDE "${INSTALL_DIR}/src/sdsl-lite-build/external/libdivsufsort/include") --set(sdsl-lite_LIB "${INSTALL_DIR}/src/sdsl-lite-build/lib") --set(sdsl-lite-divsufsort_LIB "${INSTALL_DIR}/src/sdsl-lite-build/external/libdivsufsort/lib") -+# sdsl-lite - use system library -+find_package(PkgConfig REQUIRED) -+pkg_check_modules(SDSL REQUIRED sdsl-lite) -+pkg_check_modules(DIVSUFSORT REQUIRED libdivsufsort) -+pkg_check_modules(DIVSUFSORT64 REQUIRED libdivsufsort64) -+set(sdsl-lite_INCLUDE "${SDSL_INCLUDE_DIRS}") -+set(sdsl-lite-divsufsort_INCLUDE "${DIVSUFSORT_INCLUDE_DIRS}") -+link_directories(${SDSL_LIBRARY_DIRS} ${DIVSUFSORT_LIBRARY_DIRS} ${DIVSUFSORT64_LIBRARY_DIRS}) - - # taywee's C++ args library, header only - ExternalProject_Add(tayweeargs - SOURCE_DIR "${CMAKE_SOURCE_DIR}/deps/args" -@@ -227,7 +224,6 @@ add_executable(seqwish - ${CMAKE_SOURCE_DIR}/src/version.cpp - ) - add_dependencies(seqwish tayweeargs) --add_dependencies(seqwish sdsl-lite) - add_dependencies(seqwish gzipreader) - add_dependencies(seqwish mmmulti) - add_dependencies(seqwish iitii) -@@ -253,11 +249,11 @@ target_include_directories(seqwish PUBLIC - "${paryfor_INCLUDE}" - "${mio_INCLUDE}") - target_link_libraries(seqwish -- "${sdsl-lite_LIB}/libsdsl.a" -- "${sdsl-lite-divsufsort_LIB}/libdivsufsort.a" -- "${sdsl-lite-divsufsort_LIB}/libdivsufsort64.a" -- "-latomic" -+ ${SDSL_LIBRARIES} -+ ${DIVSUFSORT_LIBRARIES} -+ ${DIVSUFSORT64_LIBRARIES} -+ #"-latomic" - Threads::Threads -- jemalloc -+ #jemalloc - z) - if (BUILD_STATIC) diff --git a/biology/seqwish/files/patch-Cargo.toml b/biology/seqwish/files/patch-Cargo.toml new file mode 100644 index 000000000000..9719128b2151 --- /dev/null +++ b/biology/seqwish/files/patch-Cargo.toml @@ -0,0 +1,8 @@ +--- Cargo.toml.orig 2024-07-24 10:53:00 UTC ++++ Cargo.toml +@@ -64,4 +64,4 @@ clap = { version = "4.5", features = ["derive"] } # + clap = { version = "4.5", features = ["derive"] } # Command-line argument parsing + + # AGC (Assembled Genomes Compressor) input support: pure-Rust decompressor, same crate/rev impg and cigzip use +-ragc-core = { git = "https://github.com/AndreaGuarracino/ragc", rev = "c2d7ac2f40b80bab7b17b3c038f755f061dd5593" } ++ragc-core = { git = "https://github.com/AndreaGuarracino/ragc" } diff --git a/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h b/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h deleted file mode 100644 index caeb5f19c418..000000000000 --- a/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h +++ /dev/null @@ -1,36 +0,0 @@ -- fix compilation error with clang-19 - ---- deps/atomic_queue/include/atomic_queue/atomic_queue.h.orig 2025-10-10 06:48:58.627210000 -0700 -+++ deps/atomic_queue/include/atomic_queue/atomic_queue.h 2025-10-10 06:49:07.323108000 -0700 -@@ -393,13 +393,13 @@ - - T do_pop(unsigned tail) noexcept { - unsigned index = details::remap_index(tail % size_); -- return Base::template do_pop_any(states_[index], elements_[index]); -+ return Base::template do_pop_any<>(states_[index], elements_[index]); - } - - template - void do_push(U&& element, unsigned head) noexcept { - unsigned index = details::remap_index(head % size_); -- Base::template do_push_any(std::forward(element), states_[index], elements_[index]); -+ Base::template do_push_any<>(std::forward(element), states_[index], elements_[index]); - } - - public: -@@ -521,13 +521,13 @@ - - T do_pop(unsigned tail) noexcept { - unsigned index = details::remap_index(tail & (size_ - 1)); -- return Base::template do_pop_any(states_[index], elements_[index]); -+ return Base::template do_pop_any<>(states_[index], elements_[index]); - } - - template - void do_push(U&& element, unsigned head) noexcept { - unsigned index = details::remap_index(head & (size_ - 1)); -- Base::template do_push_any(std::forward(element), states_[index], elements_[index]); -+ Base::template do_push_any<>(std::forward(element), states_[index], elements_[index]); - } - - public: diff --git a/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp b/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp deleted file mode 100644 index 4f4e2b9eb9a9..000000000000 --- a/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp +++ /dev/null @@ -1,60 +0,0 @@ -- fix for PPC -- fix build with clang19 - ---- deps/paryfor/paryfor.hpp.orig 2024-10-15 18:25:21 UTC -+++ deps/paryfor/paryfor.hpp -@@ -51,7 +51,22 @@ static inline void spin_loop_pause() noexcept { - } - } // namespace atomic_queue - } // namespace paryfor -+#elif defined(__ppc64__) || defined(__powerpc64__) -+namespace paryfor { -+namespace atomic_queue { -+constexpr int CACHE_LINE_SIZE = 128; // TODO: Review that this is the correct value. -+static inline void spin_loop_pause() noexcept { -+ asm volatile("or 31,31,31 # very low priority"); // TODO: Review and benchmark that this is the right instruction. -+} -+} // namespace atomic_queue -+} // namespace paryfor - #else -+namespace paryfor { -+namespace atomic_queue { -+constexpr int CACHE_LINE_SIZE = 64; // TODO: Review that this is the correct value. -+static inline void spin_loop_pause() noexcept {} -+} // namespace atomic_queue -+} // namespace paryfor - #error "Unknown CPU architecture." - #endif - -@@ -453,13 +468,13 @@ class AtomicQueue2 : public AtomicQueueCommon(tail % size_); -- return Base::template do_pop_any(states_[index], elements_[index]); -+ return Base::template do_pop_any<>(states_[index], elements_[index]); - } - - template - void do_push(U&& element, unsigned head) noexcept { - unsigned index = details::remap_index(head % size_); -- Base::template do_push_any(std::forward(element), states_[index], elements_[index]); -+ Base::template do_push_any<>(std::forward(element), states_[index], elements_[index]); - } - - public: -@@ -581,13 +596,13 @@ class AtomicQueue2B : public AtomicQueueCommon(tail & (size_ - 1)); -- return Base::template do_pop_any(states_[index], elements_[index]); -+ return Base::template do_pop_any<>(states_[index], elements_[index]); - } - - template - void do_push(U&& element, unsigned head) noexcept { - unsigned index = details::remap_index(head & (size_ - 1)); -- Base::template do_push_any(std::forward(element), states_[index], elements_[index]); -+ Base::template do_push_any<>(std::forward(element), states_[index], elements_[index]); - } - - public: diff --git a/biology/seqwish/files/patch-src_main.cpp b/biology/seqwish/files/patch-src_main.cpp deleted file mode 100644 index 73ff8da2acdb..000000000000 --- a/biology/seqwish/files/patch-src_main.cpp +++ /dev/null @@ -1,24 +0,0 @@ ---- src/main.cpp.orig 2023-07-21 20:57:07 UTC -+++ src/main.cpp -@@ -24,6 +24,8 @@ - #include "version.hpp" - #include "tempfile.hpp" - -+#include -+ - using namespace seqwish; - - int main(int argc, char** argv) { -@@ -116,9 +118,10 @@ int main(int argc, char** argv) { - if (tmp_base) { - temp_file::set_dir(args::get(tmp_base)); - } else { -- char* cwd = get_current_dir_name(); -+ char cwd[MAXPATHLEN]; -+ getwd(cwd); - temp_file::set_dir(std::string(cwd)); -- free(cwd); -+ //free(cwd); - } - - temp_file::set_keep_temp(args::get(keep_temp_files)); diff --git a/biology/seqwish/files/patch-src_tempfile.cpp b/biology/seqwish/files/patch-src_tempfile.cpp deleted file mode 100644 index 7f6c4699400d..000000000000 --- a/biology/seqwish/files/patch-src_tempfile.cpp +++ /dev/null @@ -1,31 +0,0 @@ ---- src/tempfile.cpp.orig 2023-07-21 20:48:46 UTC -+++ src/tempfile.cpp -@@ -3,6 +3,8 @@ - #include - #include "tempfile.hpp" - -+#include -+ - namespace temp_file { - - // We use this to make the API thread-safe -@@ -96,9 +98,10 @@ namespace temp_file { - - // Get the default temp dir from environment variables. - if (temp_dir.empty()) { -- char* cwd = get_current_dir_name(); -+ char cwd[MAXPATHLEN]; -+ getwd(cwd); - temp_dir = std::string(cwd); -- free(cwd); -+ //free(cwd); - /*const char *system_temp_dir = nullptr; - for (const char *var_name : {"TMPDIR", "TMP", "TEMP", "TEMPDIR", "USERPROFILE"}) { - if (system_temp_dir == nullptr) { -@@ -114,4 +117,4 @@ namespace temp_file { - void set_keep_temp(bool setting) { - keep_temp = setting; - } --} -\ No newline at end of file -+}