diff --git a/biology/fastq-trim/Makefile b/biology/fastq-trim/Makefile index 7b10097826ba..780b23489ee4 100644 --- a/biology/fastq-trim/Makefile +++ b/biology/fastq-trim/Makefile @@ -1,22 +1,23 @@ PORTNAME= fastq-trim -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.1-2 +DISTVERSIONSUFFIX= -g4f6e2c2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Lightening fast sequence read trimmer LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend USE_GITHUB= yes GH_ACCOUNT= outpaddling MAKE_ENV= VERSION=${PORTVERSION} pre-build: (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend) .include diff --git a/biology/fastq-trim/distinfo b/biology/fastq-trim/distinfo index 8b2366479432..7d078758ccd3 100644 --- a/biology/fastq-trim/distinfo +++ b/biology/fastq-trim/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1647691961 -SHA256 (outpaddling-fastq-trim-0.1.1_GH0.tar.gz) = ce959484b823f20a5e6e3c493490e71183865d15b6023ee7dc3a5822cc6b176c -SIZE (outpaddling-fastq-trim-0.1.1_GH0.tar.gz) = 30087 +TIMESTAMP = 1647885695 +SHA256 (outpaddling-fastq-trim-0.1.1-2-g4f6e2c2_GH0.tar.gz) = d7caca777c2a729941ed0f4757dde4ac989b129dd39c1c056a8cd33a62370018 +SIZE (outpaddling-fastq-trim-0.1.1-2-g4f6e2c2_GH0.tar.gz) = 30069 diff --git a/biology/fastq-trim/pkg-descr b/biology/fastq-trim/pkg-descr index e3ec0de0561a..1a0daef68185 100644 --- a/biology/fastq-trim/pkg-descr +++ b/biology/fastq-trim/pkg-descr @@ -1,4 +1,4 @@ -Fastq-trim is a hopefully lightening fast read trimming tool for QA of -DNA and RNA reads prior to analyses such as RNA-Seq. +Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA +reads prior to analyses such as RNA-Seq. WWW: https://github.com/outpaddling/Fastq-trim diff --git a/biology/fastq-trim/pkg-plist b/biology/fastq-trim/pkg-plist index 4c55bfdd58f8..e6b5028050cc 100644 --- a/biology/fastq-trim/pkg-plist +++ b/biology/fastq-trim/pkg-plist @@ -1,75 +1,75 @@ +bin/fastq-scum bin/fastq-trim -bin/fastq-vis include/fastq-trim-accessors.h include/fastq-trim-mutators.h include/fastq-trim-rvs.h include/fastq-trim.h lib/libfastq-trim.a man/man1/fastq-trim.1.gz man/man1/fastq-vis.1.gz man/man3/FASTQ_TRIM_ADAPTER1.3.gz man/man3/FASTQ_TRIM_ADAPTER1_AE.3.gz man/man3/FASTQ_TRIM_ADAPTER2.3.gz man/man3/FASTQ_TRIM_ADAPTER2_AE.3.gz man/man3/FASTQ_TRIM_ADAPTER_MATCH_FUNCTION.3.gz man/man3/FASTQ_TRIM_INFILE1.3.gz man/man3/FASTQ_TRIM_INFILE1_AE.3.gz man/man3/FASTQ_TRIM_INFILE2.3.gz man/man3/FASTQ_TRIM_INFILE2_AE.3.gz man/man3/FASTQ_TRIM_INSTREAM1.3.gz man/man3/FASTQ_TRIM_INSTREAM1_AE.3.gz man/man3/FASTQ_TRIM_INSTREAM2.3.gz man/man3/FASTQ_TRIM_INSTREAM2_AE.3.gz man/man3/FASTQ_TRIM_MAX_MISMATCH_PERCENT.3.gz man/man3/FASTQ_TRIM_MIN_LENGTH.3.gz man/man3/FASTQ_TRIM_MIN_MATCH.3.gz man/man3/FASTQ_TRIM_MIN_QUAL.3.gz man/man3/FASTQ_TRIM_OUTFILE1.3.gz man/man3/FASTQ_TRIM_OUTFILE1_AE.3.gz man/man3/FASTQ_TRIM_OUTFILE2.3.gz man/man3/FASTQ_TRIM_OUTFILE2_AE.3.gz man/man3/FASTQ_TRIM_OUTSTREAM1.3.gz man/man3/FASTQ_TRIM_OUTSTREAM1_AE.3.gz man/man3/FASTQ_TRIM_OUTSTREAM2.3.gz man/man3/FASTQ_TRIM_OUTSTREAM2_AE.3.gz man/man3/FASTQ_TRIM_PHRED_BASE.3.gz man/man3/FASTQ_TRIM_POLYA_MIN_LEN.3.gz man/man3/FASTQ_TRIM_VERBOSE.3.gz man/man3/fastq_trim_set_adapter1.3.gz man/man3/fastq_trim_set_adapter1_ae.3.gz man/man3/fastq_trim_set_adapter1_cpy.3.gz man/man3/fastq_trim_set_adapter2.3.gz man/man3/fastq_trim_set_adapter2_ae.3.gz man/man3/fastq_trim_set_adapter2_cpy.3.gz man/man3/fastq_trim_set_adapter_match_function.3.gz man/man3/fastq_trim_set_infile1.3.gz man/man3/fastq_trim_set_infile1_ae.3.gz man/man3/fastq_trim_set_infile1_cpy.3.gz man/man3/fastq_trim_set_infile2.3.gz man/man3/fastq_trim_set_infile2_ae.3.gz man/man3/fastq_trim_set_infile2_cpy.3.gz man/man3/fastq_trim_set_instream1.3.gz man/man3/fastq_trim_set_instream1_ae.3.gz man/man3/fastq_trim_set_instream1_cpy.3.gz man/man3/fastq_trim_set_instream2.3.gz man/man3/fastq_trim_set_instream2_ae.3.gz man/man3/fastq_trim_set_instream2_cpy.3.gz man/man3/fastq_trim_set_max_mismatch_percent.3.gz man/man3/fastq_trim_set_min_length.3.gz man/man3/fastq_trim_set_min_match.3.gz man/man3/fastq_trim_set_min_qual.3.gz man/man3/fastq_trim_set_outfile1.3.gz man/man3/fastq_trim_set_outfile1_ae.3.gz man/man3/fastq_trim_set_outfile1_cpy.3.gz man/man3/fastq_trim_set_outfile2.3.gz man/man3/fastq_trim_set_outfile2_ae.3.gz man/man3/fastq_trim_set_outfile2_cpy.3.gz man/man3/fastq_trim_set_outstream1.3.gz man/man3/fastq_trim_set_outstream1_ae.3.gz man/man3/fastq_trim_set_outstream1_cpy.3.gz man/man3/fastq_trim_set_outstream2.3.gz man/man3/fastq_trim_set_outstream2_ae.3.gz man/man3/fastq_trim_set_outstream2_cpy.3.gz man/man3/fastq_trim_set_phred_base.3.gz man/man3/fastq_trim_set_polya_min_len.3.gz man/man3/fastq_trim_set_verbose.3.gz