diff --git a/science/libcifpp/Makefile b/science/libcifpp/Makefile index c26cbf0ae479..d9ea3b077d47 100644 --- a/science/libcifpp/Makefile +++ b/science/libcifpp/Makefile @@ -1,38 +1,38 @@ PORTNAME= libcifpp DISTVERSIONPREFIX= v -DISTVERSION= 7.0.4 +DISTVERSION= 7.0.5 CATEGORIES= science MASTER_SITES= https://files.wwpdb.org/pub/pdb/data/monomers/:components DISTFILES= components.cif.gz:components DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} EXTRACT_ONLY= ${GH_ACCOUNT}-${GH_PROJECT}-${DISTVERSIONFULL}_GH0${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library to manipulate mmCIF and PDB files WWW= https://github.com/PDB-REDO/libcifpp LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= catch>0:devel/catch LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs RUN_DEPENDS= bash:shells/bash USES= cmake:testing compiler:c++20-lang eigen:3 shebangfix USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= PDB-REDO SHEBANG_FILES= tools/update-libcifpp-data.in CMAKE_ON= BUILD_SHARED_LIBS CMAKE_ARGS= -DDISTDIR_FULL=${DISTDIR}/${DIST_SUBDIR} CMAKE_TESTING_ON= ENABLE_TESTING post-install: @cd ${STAGEDIR}${PREFIX} && \ ${RM} -r var etc/libcifpp etc/periodic @${RM} -r ${STAGEDIR}/var/cache/libcifpp .include diff --git a/science/libcifpp/distinfo b/science/libcifpp/distinfo index 860546baef63..cebc2c3c6840 100644 --- a/science/libcifpp/distinfo +++ b/science/libcifpp/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1722210707 -SHA256 (libcifpp-7.0.4/components.cif.gz) = 09b35f5f7e2841f08a6d3f19fc66e4d422b2a415d08cae5f074723608b997278 -SIZE (libcifpp-7.0.4/components.cif.gz) = 100547781 -SHA256 (libcifpp-7.0.4/PDB-REDO-libcifpp-v7.0.4_GH0.tar.gz) = 324eda2f6874df32671cd984c7249bfae025ca3fe1bfd875cbef35b046408b88 -SIZE (libcifpp-7.0.4/PDB-REDO-libcifpp-v7.0.4_GH0.tar.gz) = 2598838 +TIMESTAMP = 1726205020 +SHA256 (libcifpp-7.0.5/components.cif.gz) = d7b861b7b270188584c45a2802c048dbdb3c61325856536c8aab1276398b5e34 +SIZE (libcifpp-7.0.5/components.cif.gz) = 101362575 +SHA256 (libcifpp-7.0.5/PDB-REDO-libcifpp-v7.0.5_GH0.tar.gz) = 5de29b28e422c27464f346dc2dd238e514b06dd588590af7ec4139f03817f5a0 +SIZE (libcifpp-7.0.5/PDB-REDO-libcifpp-v7.0.5_GH0.tar.gz) = 2648187 diff --git a/science/libcifpp/files/patch-CMakeLists.txt b/science/libcifpp/files/patch-CMakeLists.txt index cd053e94fecc..ffc6a39a4f00 100644 --- a/science/libcifpp/files/patch-CMakeLists.txt +++ b/science/libcifpp/files/patch-CMakeLists.txt @@ -1,38 +1,29 @@ ---- CMakeLists.txt.orig 2024-04-03 12:01:51 UTC +--- CMakeLists.txt.orig 2024-09-13 05:26:00 UTC +++ CMakeLists.txt -@@ -331,7 +331,7 @@ set(project_headers - include/cif++/validate.hpp - ) - --add_library(cifpp STATIC) -+add_library(cifpp) - add_library(cifpp::cifpp ALIAS cifpp) - - target_sources(cifpp @@ -395,7 +395,7 @@ if(CIFPP_DOWNLOAD_CCD) - # to download the gzipped version and decompress it ourselves. - find_program(GUNZIP gunzip) -- if(WIN32 OR GUNZIP STREQUAL "GUNZIP-NOTFOUND") -+ if(FALSE OR WIN32 OR GUNZIP STREQUAL "GUNZIP-NOTFOUND") + if(WIN32 OR GUNZIP STREQUAL "GUNZIP-NOTFOUND") file( - DOWNLOAD https://files.wwpdb.org/pub/pdb/data/monomers/components.cif +- DOWNLOAD https://files.wwpdb.org/pub/pdb/data/monomers/components.cif ++ DOWNLOAD file://${DISTDIR_FULL}/components.cif.gz ${COMPONENTS_CIF} -@@ -405,7 +405,7 @@ if(CIFPP_DOWNLOAD_CCD) + SHOW_PROGRESS + STATUS CCD_FETCH_STATUS) +@@ -403,7 +403,7 @@ if(CIFPP_DOWNLOAD_CCD) if(NOT EXISTS "${COMPONENTS_CIF}.gz") file( DOWNLOAD - https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz + file://${DISTDIR_FULL}/components.cif.gz ${COMPONENTS_CIF}.gz SHOW_PROGRESS STATUS CCD_FETCH_STATUS) -@@ -557,7 +557,7 @@ if(CIFPP_INSTALL_UPDATE_SCRIPT) +@@ -556,7 +556,7 @@ if(CIFPP_INSTALL_UPDATE_SCRIPT) # a config file, to make it complete # install(DIRECTORY DESTINATION "${CMAKE_INSTALL_LOCALSTATEDIR}/libcifpp") - if(NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf") + if(TRUE OR NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf") file( WRITE ${CMAKE_CURRENT_BINARY_DIR}/libcifpp.conf [[# Uncomment the next line to enable automatic updates diff --git a/science/libcifpp/pkg-plist b/science/libcifpp/pkg-plist index 1238023be915..ec487c1bfcb2 100644 --- a/science/libcifpp/pkg-plist +++ b/science/libcifpp/pkg-plist @@ -1,41 +1,41 @@ etc/cron.weekly/update-libcifpp-data %%ETCDIR%%.conf include/cif++.hpp include/cif++/atom_type.hpp include/cif++/category.hpp include/cif++/compound.hpp include/cif++/condition.hpp include/cif++/datablock.hpp include/cif++/dictionary_parser.hpp include/cif++/exports.hpp include/cif++/file.hpp include/cif++/format.hpp include/cif++/forward_decl.hpp include/cif++/gzio.hpp include/cif++/item.hpp include/cif++/iterator.hpp include/cif++/matrix.hpp include/cif++/model.hpp include/cif++/parser.hpp include/cif++/pdb.hpp include/cif++/pdb/cif2pdb.hpp include/cif++/pdb/io.hpp include/cif++/pdb/pdb2cif.hpp include/cif++/pdb/tls.hpp include/cif++/point.hpp include/cif++/row.hpp include/cif++/symmetry.hpp include/cif++/text.hpp include/cif++/utilities.hpp include/cif++/validate.hpp lib/cmake/cifpp/cifpp-config-version.cmake lib/cmake/cifpp/cifpp-config.cmake lib/cmake/cifpp/cifpp-targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/cifpp/cifpp-targets.cmake lib/libcifpp.so lib/libcifpp.so.7.0 -lib/libcifpp.so.7.0.4 +lib/libcifpp.so.7.0.5 %%DATADIR%%/components.cif %%DATADIR%%/mmcif_ddl.dic %%DATADIR%%/mmcif_ma.dic %%DATADIR%%/mmcif_pdbx.dic