diff --git a/science/phonopy/Makefile b/science/phonopy/Makefile
index 31e838e303f3..bcbde0ec6b9a 100644
--- a/science/phonopy/Makefile
+++ b/science/phonopy/Makefile
@@ -1,25 +1,25 @@
 PORTNAME=	phonopy
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2.26.3
+DISTVERSION=	2.26.4
 CATEGORIES=	science python
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package for phonon calculations at harmonic and quasi-harmonic levels
 WWW=		https://phonopy.github.io/phonopy/
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 USES=		cmake
 USE_LDCONFIG=	yes
 
 USE_GITHUB=	yes
 
 CMAKE_ON=	PHONOPY PHONOPY_LIBS BUILD_SHARED_LIBS
 
 PLIST_FILES=	include/phonopy.h \
 		lib/libphonopy_libs.so \
 		lib/libphonopy_libs.so.1 \
 		lib/libphonopy_libs.so.${DISTVERSION}
 
 .include <bsd.port.mk>
diff --git a/science/phonopy/distinfo b/science/phonopy/distinfo
index 3041bf545885..11b23eecb059 100644
--- a/science/phonopy/distinfo
+++ b/science/phonopy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1720511777
-SHA256 (phonopy-phonopy-v2.26.3_GH0.tar.gz) = 3d7ba40239b37dd0396eb69541bf2f2328d0164f1f54ec792d1be52797f12ed1
-SIZE (phonopy-phonopy-v2.26.3_GH0.tar.gz) = 7020364
+TIMESTAMP = 1720977982
+SHA256 (phonopy-phonopy-v2.26.4_GH0.tar.gz) = 60b06c4a8485ec6c6b0121b2654e8f8aec5e8d2aae0ab307812b410f180f026b
+SIZE (phonopy-phonopy-v2.26.4_GH0.tar.gz) = 7019007
diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile
index 1ce9740994bd..59ed4b56a75d 100644
--- a/science/py-phonopy/Makefile
+++ b/science/py-phonopy/Makefile
@@ -1,36 +1,36 @@
 PORTNAME=	phonopy
-DISTVERSION=	2.26.3
+DISTVERSION=	2.26.4
 CATEGORIES=	science python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Package for phonon calculations at harmonic and quasi-harmonic levels
 WWW=		https://phonopy.github.io/phonopy/
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	cmake:devel/cmake-core \
 		${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \
 		${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}setuptools-scm>=0:devel/py-setuptools-scm@${PY_FLAVOR}
 RUN_DEPENDS=	${PYNUMPY} \
-		${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.2:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}spglib>=2.3:science/py-spglib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}hiphive>0:science/py-hiphive@${PY_FLAVOR}
 
 USES=		python
 USE_PYTHON=	pep517 cython autoplist pytest
 
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 TEST_WRKSRC=	${WRKSRC}/test
 
 post-install:
 	@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/phonopy/_phonopy${PYTHON_EXT_SUFFIX}.so
 
 .include <bsd.port.mk>
diff --git a/science/py-phonopy/distinfo b/science/py-phonopy/distinfo
index 61c3fc96e14d..75c78daab4ea 100644
--- a/science/py-phonopy/distinfo
+++ b/science/py-phonopy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1720512685
-SHA256 (phonopy-2.26.3.tar.gz) = c3677c7e382c60763fea74e1de531ebe7b3d99065b7df91ad2e3034c8b908be7
-SIZE (phonopy-2.26.3.tar.gz) = 4032166
+TIMESTAMP = 1720978068
+SHA256 (phonopy-2.26.4.tar.gz) = b38cc859b84f4d5fbd59961d52fcb552af611ec80f44af44085af938a79cd327
+SIZE (phonopy-2.26.4.tar.gz) = 4032224