diff --git a/biology/diamond/Makefile b/biology/diamond/Makefile index 690d48df2128..244ed8c79bdf 100644 --- a/biology/diamond/Makefile +++ b/biology/diamond/Makefile @@ -1,24 +1,24 @@ PORTNAME= diamond DISTVERSIONPREFIX= v -DISTVERSION= 2.2.1 +DISTVERSION= 2.2.2 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org COMMENT= BLAST-compatible local sequence aligner WWW= http://ab.inf.uni-tuebingen.de/software/diamond/ \ https://github.com/bbuchfink/diamond LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le USES= cmake localbase sqlite USE_GITHUB= yes GH_ACCOUNT= bbuchfink TEST_TARGET= test PLIST_FILES= bin/diamond .include diff --git a/biology/diamond/distinfo b/biology/diamond/distinfo index 88f9ea0b2cfe..b6253b1ba42d 100644 --- a/biology/diamond/distinfo +++ b/biology/diamond/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1782159924 -SHA256 (bbuchfink-diamond-v2.2.1_GH0.tar.gz) = 36a70540039c50e4afa1d36587eb80d1a85113288c2a49731cdaaf90e3de7d02 -SIZE (bbuchfink-diamond-v2.2.1_GH0.tar.gz) = 9358746 +TIMESTAMP = 1782163658 +SHA256 (bbuchfink-diamond-v2.2.2_GH0.tar.gz) = 35cb389dad7326515267b21a04256382853754d32b48eae6fd8a56fbb191e1c6 +SIZE (bbuchfink-diamond-v2.2.2_GH0.tar.gz) = 14394953 diff --git a/biology/diamond/files/patch-src_util_io_decompressor.h b/biology/diamond/files/patch-src_util_io_decompressor.h new file mode 100644 index 000000000000..7f83d7ea0f6b --- /dev/null +++ b/biology/diamond/files/patch-src_util_io_decompressor.h @@ -0,0 +1,18 @@ +--- src/util/io/decompressor.h.orig 2026-06-22 21:46:21 UTC ++++ src/util/io/decompressor.h +@@ -79,7 +79,7 @@ struct PassThrough : Decompressor { + return std::fread(buffer, size, count, stream); + } + int fgetc(FILE* stream) override { +-#if defined(_MSC_VER) || defined(__APPLE__) ++#if defined(_MSC_VER) || defined(__APPLE__) || defined(__FreeBSD__) + return std::fgetc(stream); + #else + return fgetc_unlocked(stream); +@@ -141,4 +142,4 @@ struct ZstdDecompressor : Decompressor { (private) + bool eos_ = false; + int pushback_ = EOF; + }; +-#endif +\ No newline at end of file ++#endif