diff --git a/benchmarks/nosqlbench/Makefile b/benchmarks/nosqlbench/Makefile
index 025615262c9a..dcc579afdcec 100644
--- a/benchmarks/nosqlbench/Makefile
+++ b/benchmarks/nosqlbench/Makefile
@@ -1,31 +1,31 @@
 # Created by: Veniamin Gvozdikov <vg@FreeBSD.org>
 
 PORTNAME=	nosqlbench
 PORTVERSION=	0.0.${DATE}
 PORTREVISION=	1
 CATEGORIES=	benchmarks databases
 MASTER_SITES=	LOCAL/vg
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Micro-benchmarking NoSQL storage
 
 LICENSE=	BSD2CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 LIB_DEPENDS=	libleveldb.so:databases/leveldb
 
 DATE=		20151214
 USES=		cmake:insource tar:bzip2
 
-CONFLICTS_INSTALL=	nanoblogger tarantool-c # bin/nb include/tarantool/tarantool.h
+CONFLICTS_INSTALL=	tarantool-c # bin/nb include/tarantool/tarantool.h
 
 post-patch:
 	@${REINPLACE_CMD} -e 's|-O3 -march=native||' ${WRKSRC}/CMakeLists.txt \
 		${WRKSRC}/third_party/memcached/CMakeLists.txt \
 		${WRKSRC}/third_party/tarantool-c/CMakeLists.txt
 
 post-install:
 	${INSTALL_DATA} ${WRKSRC}/sources/nosqlbench.conf \
 		${STAGEDIR}${PREFIX}/etc/nosqlbench.conf.sample
 
 .include <bsd.port.mk>
diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile
index 90c3219ff061..ecf33e9af5ff 100644
--- a/biology/ncbi-toolkit/Makefile
+++ b/biology/ncbi-toolkit/Makefile
@@ -1,81 +1,81 @@
 # Created by: tonym
 
 PORTNAME=	ncbi-toolkit
 DISTVERSION=	2017.01.06	# containing BLAST v2.2.27 (? is this true)
 PORTREVISION=	6
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
 DISTNAME=	ncbi
 DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
 
 LIB_DEPENDS=	libfontconfig.so:x11-fonts/fontconfig \
 		libgmp.so:math/gmp \
 		libgnutls.so:security/gnutls \
 		libhogweed.so:security/nettle \
 		libidn2.so:dns/libidn2 \
 		libnettle.so:security/nettle \
 		libp11-kit.so:security/p11-kit \
 		libpng.so:graphics/png \
 		libtasn1.so:security/libtasn1 \
 		libtspi.so:security/trousers \
 		libunistring.so:devel/libunistring
 
 USES=		gettext-runtime iconv jpeg motif xorg
 USE_XORG=	x11 xau xext xft xmu xrender xt
 
-CONFLICTS_INSTALL=	fhist ncbi-cxx-toolkit # bin/test_regexp man/man1/fmerge.1.gz
+CONFLICTS_INSTALL=	fhist # bin/test_regexp man/man1/fmerge.1.gz
 
 SUB_FILES=	pkg-message
 
 OPTIONS_DEFINE=	DOCS
 
 post-patch:
 	@${REINPLACE_CMD} -e \
 		's|/usr/X11R6|${LOCALBASE}|g' ${WRKSRC}/make/makedis.csh
 	@${REINPLACE_CMD} -e \
 		'/^NCBI_CC/s|=.*|= ${CC}| ; \
 		 /^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \
 		 /^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \
 		 /^NCBI_VIBLIBS/s|-lXp\ || ; \
 		 /^NCBI_DISTVIBLIBS/s|-lXp\ || ; \
 		 s|-I/usr/X11R6/include||g ; \
 		 s|-L/usr/X11R6/lib||g ; \
 		 s|/usr/local|${LOCALBASE}|g ; \
 		 s|-Wl,-Bstatic|| ; \
 		 s|-Wl,-Bdynamic||' ${WRKSRC}/platform/freebsd.ncbi.mk
 	@${REINPLACE_CMD} -e 's/%%ICONV_LIB%%/${ICONV_LIB}/' \
 		${WRKSRC}/make/makeall.unx ${WRKSRC}/make/makenet.unx
 
 # the ncbi-toolkit provides a shell script to drive the build
 # and we use it
 
 do-build:
 	@cd ${WRKDIR} && ./${DISTNAME}/make/makedis.csh
 
 # the ncbi-toolkit does not provide an install target
 # we thus roll our own
 
 do-install:
 	cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} * ${STAGEDIR}${PREFIX}/bin
 	@${MKDIR} ${STAGEDIR}${PREFIX}/lib/${DISTNAME}
 	cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \
 		${STAGEDIR}${PREFIX}/lib/${DISTNAME}
 	@${MKDIR} ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
 	cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \
 		${STAGEDIR}${PREFIX}/include/${DISTNAME}
 	cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \
 		${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
 	cd ${WRKSRC}/doc/man && ${INSTALL_MAN} * \
 		${STAGEDIR}${MANPREFIX}/man/man1
 	@${MKDIR} ${STAGEDIR}${DATADIR}
 	cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}
 
 do-install-DOCS-on:
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 	@(cd ${WRKSRC}/doc && \
 		${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} '-not ( -name man -o -path ./man\/* )')
 
 .include <bsd.port.mk>
diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile
index 5656d5baf827..1ab10160d404 100644
--- a/biology/vcflib/Makefile
+++ b/biology/vcflib/Makefile
@@ -1,34 +1,34 @@
 PORTNAME=		vcflib
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.0.3
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	C++ library and CLI tools for parsing and manipulating VCF files
 
 LICENSE=	MIT
 
 LIB_DEPENDS=	libhts.so:biology/htslib \
 		libtabix.so:biology/tabixpp
 
 USES=		cmake localbase:ldflags pkgconfig python shebangfix
 USE_GITHUB=	yes
 
 GH_ACCOUNT=	ekg
 GH_TUPLE=	ekg:fastahack:bb33265:fastahack/fastahack \
 		ekg:filevercmp:1a9b779:filevercmp/filevercmp \
 		ekg:fsom:a6ef318:fsom/fsom \
 		google:googletest:d225acc:googletest/googletest \
 		ekg:intervaltree:aa59377:intervaltree/intervaltree \
 		edawson:libVCFH:44b6580:libVCFH/libVCFH \
 		ekg:multichoose:68733cd:multichoose/multichoose \
 		ekg:smithwaterman:2610e25:smithwaterman/smithwaterman \
 		simd-everywhere:simde-no-tests:9af03cd:simd/src/simde
 SHEBANG_FILES=	scripts/*
 
 # Clang and GCC disable sse2 by default on i386, but it's required for vcflib
 CFLAGS_i386=	-msse2
 
-CONFLICTS_INSTALL=	dakota filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp
+CONFLICTS_INSTALL=	filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp
 
 .include <bsd.port.mk>