diff --git a/biology/rampler/Makefile b/biology/rampler/Makefile index ea120e8b7a51..a1a186a50173 100644 --- a/biology/rampler/Makefile +++ b/biology/rampler/Makefile @@ -1,26 +1,25 @@ PORTNAME= rampler -DISTVERSION= 2.0.0 -PORTREVISION= 1 +DISTVERSION= 2.1.1 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Standalone module for sampling genomic sequences WWW= https://github.com/rvaser/rampler LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= bioparser>0:biology/bioparser \ ${LOCALBASE}/include/biosoup/nucleic_acid.hpp:biology/biosoup USES= cmake compiler:c++11-lang localbase USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= rvaser LDFLAGS+= -lz PLIST_FILES= bin/${PORTNAME} .include diff --git a/biology/rampler/distinfo b/biology/rampler/distinfo index dea3e8e59aea..4aa1de2305ce 100644 --- a/biology/rampler/distinfo +++ b/biology/rampler/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1611049494 -SHA256 (rvaser-rampler-2.0.0_GH0.tar.gz) = 3a589b1ce1c2a0ac55a105cdd185b5698b4a5f6c9e015e59edee56fd64261eb8 -SIZE (rvaser-rampler-2.0.0_GH0.tar.gz) = 5190 +TIMESTAMP = 1789780944 +SHA256 (rvaser-rampler-2.1.1_GH0.tar.gz) = 9f6bd2a461e87a1f6eaa9bfd8a287da187718af5f892d05fd4cf6dd13c33fd45 +SIZE (rvaser-rampler-2.1.1_GH0.tar.gz) = 5365 diff --git a/biology/rampler/files/patch-CMakeLists.txt b/biology/rampler/files/patch-CMakeLists.txt index cfe132f8805e..a0f874b6c053 100644 --- a/biology/rampler/files/patch-CMakeLists.txt +++ b/biology/rampler/files/patch-CMakeLists.txt @@ -1,31 +1,20 @@ ---- CMakeLists.txt.orig 2021-01-19 09:45:19 UTC +--- CMakeLists.txt.orig 2026-09-19 01:26:29 UTC +++ CMakeLists.txt -@@ -13,19 +13,20 @@ set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DI - set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib) - set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin) +@@ -16,7 +16,7 @@ include(GNUInstallDirs) + include(FetchContent) + include(GNUInstallDirs) --if (NOT TARGET bioparser) -- add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL) --endif () --if (NOT TARGET biosoup) -- add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL) --endif () -+#if (NOT TARGET bioparser) -+# add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL) -+#endif () -+#if (NOT TARGET biosoup) -+# add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL) -+#endif () - - add_executable(${PROJECT_NAME} - src/main.cpp - src/sampler.cpp) - target_link_libraries(${PROJECT_NAME} -- bioparser -- biosoup) -+ #bioparser -+ #biosoup -+) - target_compile_definitions(${PROJECT_NAME} PRIVATE - RAMPLER_VERSION="v${PROJECT_VERSION}") +-find_package(bioparser 3.0.15 QUIET) ++find_package(bioparser REQUIRED) + if (NOT bioparser_FOUND) + FetchContent_Declare( + bioparser +@@ -33,7 +33,7 @@ endif () + endif () + endif () +-find_package(biosoup 0.10.0 QUIET) ++find_package(biosoup REQUIRED) + if (NOT biosoup_FOUND) + FetchContent_Declare( + biosoup