diff --git a/biology/bio-mocha/Makefile b/biology/bio-mocha/Makefile index 828b246380b0..c8c229801d1c 100644 --- a/biology/bio-mocha/Makefile +++ b/biology/bio-mocha/Makefile @@ -1,49 +1,48 @@ PORTNAME= bio-mocha -DISTVERSION= 1.20 -PORTREVISION= 1 +DISTVERSION= 1.22 CATEGORIES= biology MASTER_SITES= https://software.broadinstitute.org/software/mocha/ # Get this right, or ports will download bcftools in it's place via tuple -DISTFILES+= ${PORTNAME}_${DISTVERSION}-20240505.tar.gz +DISTFILES+= ${PORTNAME}_${DISTVERSION}-20250819.tar.gz MAINTAINER= jwb@FreeBSD.org COMMENT= Bcftools plugin for mosaic chromosomal alteration analysis WWW= https://software.broadinstitute.org/software/mocha/ LICENSE= MIT -BUILD_DEPENDS= bash:shells/bash htslib>=1.22:biology/htslib +BUILD_DEPENDS= bash:shells/bash htslib>=1.24:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib RUN_DEPENDS= bcftools>=${PORTVERSION}:biology/bcftools USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GH_ACCOUNT= samtools GH_PROJECT= bcftools -GH_TAGNAME= 1.22 +GH_TAGNAME= 1.24 GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl post-extract: @${MV} ${WRKDIR}/*.c ${WRKDIR}/*.h ${WRKSRC}/plugins @${MKDIR} ${WRKSRC}/MoCha @${MV} ${WRKDIR}/*.R ${WRKSRC}/MoCha pre-configure: @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \ ${WRKSRC}/configure.ac # One .so for each .c in the mocha distfile do-install: ${MKDIR} ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/extendFMT.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/mocha.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/mochatools.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools (cd ${WRKSRC}/MoCha && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}) .include diff --git a/biology/bio-mocha/distinfo b/biology/bio-mocha/distinfo index 6485cffc5d72..9d05039e80b1 100644 --- a/biology/bio-mocha/distinfo +++ b/biology/bio-mocha/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1750428898 -SHA256 (bio-mocha_1.20-20240505.tar.gz) = 3beeb7f046b491fed162dfedd83a29b3eebb165fb1f2a25f44df7fa2f063793b -SIZE (bio-mocha_1.20-20240505.tar.gz) = 66752 -SHA256 (samtools-bcftools-1.20-1.22_GH0.tar.gz) = 1608e547daf7bd5ab7d52dea57019f57da3fdfb29bc26dece1e8d01a999a9a2d -SIZE (samtools-bcftools-1.20-1.22_GH0.tar.gz) = 3751342 +TIMESTAMP = 1787335796 +SHA256 (bio-mocha_1.22-20250819.tar.gz) = c5d4da549e710377335b17d5222c1253152b4b4b17b5b1dfef558debe3618c8e +SIZE (bio-mocha_1.22-20250819.tar.gz) = 67361 +SHA256 (samtools-bcftools-1.22-1.24_GH0.tar.gz) = 386ac0d2fa51da312d01aada488ec98cf44ea4bac00d2a6c6d4993291b2f8e8c +SIZE (samtools-bcftools-1.22-1.24_GH0.tar.gz) = 3800098