diff --git a/biology/snpeff/Makefile b/biology/snpeff/Makefile index ac4b81e11561..a05edccb076e 100644 --- a/biology/snpeff/Makefile +++ b/biology/snpeff/Makefile @@ -1,43 +1,43 @@ PORTNAME= snpeff -DISTVERSION= 5.0 +DISTVERSION= 5.1 CATEGORIES= biology java python MASTER_SITES= https://snpeff.blob.core.windows.net/versions/ DISTNAME= snpEff_latest_core DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= Genetic variant annotation and effect prediction toolbox WWW= http://snpeff.sourceforge.net/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md RUN_DEPENDS= bash:shells/bash USES= python:3.6+ shebangfix zip USE_JAVA= yes JAVA_VERSION= 17+ SHEBANG_FILES= scripts/* scripts/gsa/* NO_BUILD= yes NO_ARCH= yes WRKSRC= ${WRKDIR}/snpEff LIBEXEC_DIR= ${PREFIX}/libexec/snpeff pre-configure: ${REINPLACE_CMD} -e 's|%%JAVAJARDIR%%|${JAVAJARDIR}|g' \ -e 's|%%JAVA_HOME%%|${JAVA_HOME}|g' \ ${WRKSRC}/scripts/snpEff ${WRKSRC}/scripts/snpSift do-install: ${MKDIR} ${STAGEDIR}${JAVAJARDIR}/snpeff ${MKDIR} ${STAGEDIR}${LIBEXEC_DIR} ${INSTALL_SCRIPT} ${WRKSRC}/scripts/snpEff ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${WRKSRC}/scripts/snpSift ${STAGEDIR}${PREFIX}/bin ${INSTALL_DATA} ${WRKSRC}/*.jar ${STAGEDIR}${JAVAJARDIR}/snpeff ${INSTALL_DATA} ${WRKSRC}/*.config ${STAGEDIR}${JAVAJARDIR}/snpeff cd ${WRKSRC}/scripts && ${COPYTREE_BIN} . ${STAGEDIR}${LIBEXEC_DIR} .include diff --git a/biology/snpeff/distinfo b/biology/snpeff/distinfo index decfc79a708d..f57ab2e7febf 100644 --- a/biology/snpeff/distinfo +++ b/biology/snpeff/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1618847647 -SHA256 (snpeff-5.0/snpEff_latest_core.zip) = 85d907b5dd9e9008a0cf245956e3c9077a31e45f21a1b580d9b98a53fd8dcb9d -SIZE (snpeff-5.0/snpEff_latest_core.zip) = 45828841 +TIMESTAMP = 1671473460 +SHA256 (snpeff-5.1/snpEff_latest_core.zip) = 919e0595c08e86d1dd82279723c83cb872070244ee4ce0cb3167bde2b272893b +SIZE (snpeff-5.1/snpEff_latest_core.zip) = 67191760