diff --git a/Mk/Uses/python.mk b/Mk/Uses/python.mk index 57ed8fa54264..1312ac53c96a 100644 --- a/Mk/Uses/python.mk +++ b/Mk/Uses/python.mk @@ -1,1044 +1,1042 @@ # Provide support for Python related ports. This includes detecting Python # interpreters, ports providing package and modules for python as well as # consumer ports requiring Python at build or run time. # # Feature: python # Usage: USES=python[:version-spec][,arg,...] # Valid ARGS: , patch, build, run, test, env # # version-spec Declarative specification for the Python version(s) the # port supports. Subsets and ranges can be specified: # # * # * - # * + # * - # # Examples: # # USES=python:2.7 # Supports Python 2.7 Only # USES=python:3.11+ # Supports Python 3.11 or later # USES=python:3.11-3.12 # Supports Python 3.11 to 3.12 # USES=python:-3.11 # Supports Python up to 3.11 # USES=python # Supports 3.10+ # # NOTE: should be as specific as possible, matching the versions # upstream declares support for, without being incorrect. In particular, # USES=python *without* a means 3.11+, # including unreleased versions, which is probably incorrect. # # Not specifying a should only be used when a more specific # cannot be specified due to syntax limitations, for # example: 2.7,3.11-3.12, but even in this case, X.Y+ (2.7+), or -X.Y (-3.11) # is preferred and likely more correct. # # patch Python is needed at patch time. Adds dependency to PATCH_DEPENDS. # build Python is needed at build time. Adds dependency to BUILD_DEPENDS. # run Python is needed at run time. Adds dependency to RUN_DEPENDS. # test Python is needed at test time. Adds dependency to TEST_DEPENDS. # env Does not depend on Python but needs the environment set up. This # is mainly used when depending on flavored python ports, or when a # correct PYTHON_CMD is required. It has the same effect as setting # PYTHON_NO_DEPENDS. # # If build, run and test are omitted, Python will be added as BUILD_DEPENDS, # RUN_DEPENDS and TEST_DEPENDS. # patch is independant, it does not prevent the default build/run/test # dependency. # env or PYTHON_NO_DEPENDS can be set to not add any dependencies. # # Exported variables: # # PYTHON_VERSION - The chosen Python interpreter including the version, # e.g. python2.7, python3.11, etc. # # Variables, which can be set by the port: # # USE_PYTHON - A list of additional features and functionality to # enable. Supported features are: # # concurrent - Indicates that the port can be installed for # different python versions at the same time. The port # is supposed to use a unique prefix for certain # directories using USES=uniquefiles:dirs (see the # uniquefiles.mk Uses for details about the # directories), if set to yes. Binaries receive an # additional suffix, based on ${PYTHON_VER}. # # The values for the uniquefiles USES are set as # follows: # # UNIQUE_PREFIX= ${PYTHON_PKGNAMEPREFIX} # UNIQUE_SUFFIX= -${PYTHON_VER} # # If the port is installed for the current default # python version, scripts and binaries in # # ${PREFIX}/bin # ${PREFIX}/sbin # ${PREFIX}/libexec # # are linked from the prefixed version to the # prefix-less original name, e.g. # bin/foo-2.7 --> bin/foo. # # cryptography_build # - Depend on security/cryptography at build-time. # # cryptography - Depend on security/cryptography at run-time. # # cryptography_test # - Depend on security/cryptography at test-time. # # cython - Depend on lang/cython at build-time. # # cython_run - Depend on lang/cython at run-time. # # cython_test - Depend on lang/cython for tests. # # cython0 - Depend on lang/cython0 at build-time. # # cython0_run - Depend on lang/cython0 at run-time. # # flavors - Force creation of flavors for Python 2 and 3 default # versions, where applicable. # # noflavors - Disable automatic creation of flavors if they would # otherwise be created and they are not wanted. # # allflavors - Generate flavors for all possible versions and not # simply the default ones. Only to be used for py-* # ports that are part of the Python distribution, but # kept as separate ports. # # optsuffix - Set PKGNAMESUFFIX to PYTHON_PKGNAMESUFFIX if not the # default python version. # # distutils - Use distutils as do-configure, do-build and # do-install targets. implies flavors. # # pep517 - Follow the PEP-517 standard to build and install wheels # as do-build and do-install targets. implies flavors. # # autoplist - Automatically generates the packaging list for a # port that uses distutils when defined. # requires: distutils # # py3kplist - Automatically generates Python 3.x compatible # __pycache__ entries from a Python 2.x packaging list # when defined. Use this for ports that do *not* use # standard Python packaging mechanisms such as # distutils, and support *both* Python 2.x and 3.x. # Not needed, if USE_PYTHON=autoplist is set. # # pythonprefix - Says that the port installs in ${PYTHONBASE} instead # of ${PREFIX}. # # noegginfo - Skip an egg-info entry from plist, if defined. # # nose - Run tests with nose (devel/py-nose) # # nose2 - Run tests with nose2 (devel/py-nose2) # # pytest - Run tests with latest pytest (devel/py-pytest) # # unittest - Run tests with unittest # # unittest2 - Run tests with unittest2 (devel/py-unittest2) # # PYTHON_CMD - Python's command line file name, including the # version number (used for dependencies). # default: ${PYTHONBASE}/bin/${PYTHON_VERSION} # # PEP517_BUILD_CMD - Command sequence for a PEP-517 build frontend that builds a wheel. # default: ${PYTHON_CMD} -m build --no-isolation --wheel ${PEP517_BUILD_CONFIG_SETTING} # # PEP517_BUILD_DEPEND - Port needed to execute ${PEP517_BUILD_CMD}. # default: ${PYTHON_PKGNAMEPREFIX}build>=0:devel/py-build@${PY_FLAVOR} # # PEP517_BUILD_CONFIG_SETTING # - Options for the build backend. Must include -C or --config-setting per option. # default: # # PEP517_INSTALL_CMD - Command sequence for a PEP-517 install frontend that installs a wheel. # default: ${PYTHON_CMD} -m installer --destdir ${STAGEDIR} --prefix ${PREFIX} ${BUILD_WRKSRC}/dist/${PORTNAME:C|[-_]+|_|g}-${DISTVERSION}*.whl # # PEP517_INSTALL_DEPEND - Port needed to execute ${PEP517_INSTALL_CMD}. # default: ${PYTHON_PKGNAMEPREFIX}installer>=0:devel/py-installer@${PY_FLAVOR} # # PYSETUP - Name of the setup script used by the distutils # package. # default: setup.py # # PYDISTUTILS_PKGNAME # - Internal name in the distutils for egg-info. # default: ${PORTNAME} # # PYDISTUTILS_PKGVERSION # - Internal version in the distutils for egg-info. # default: ${PORTVERSION} # # PYDISTUTILS_CONFIGURE_TARGET # - Pass this command to distutils on configure stage. # default: config # # PYDISTUTILS_BUILD_TARGET # - Pass this command to distutils on build stage. # default: build # # PYDISTUTILS_INSTALL_TARGET # - Pass this command to distutils on install stage. # default: install # # PYDISTUTILS_CONFIGUREARGS # - Arguments to config with distutils. # default: # # PYDISTUTILS_BUILDARGS # - Arguments to build with distutils. # default: # # PYDISTUTILS_INSTALLARGS # - Arguments to install with distutils. # default: -c -O1 --prefix=${PREFIX} --single-version-externally-managed --root=${STAGEDIR} # # PYDISTUTILS_EGGINFO # - Canonical name for egg-info. # default: ${PYDISTUTILS_PKGNAME:C/[^A-Za-z0-9.]+/_/g}-${PYDISTUTILS_PKGVERSION:C/[^A-Za-z0-9.]+/_/g}-py${PYTHON_VER}.egg-info # # PYTEST_BROKEN_TESTS - Lists of 'pytest -k' patterns to skip tests which # require fixing. # default: # # PYTEST_IGNORED_TESTS - Lists of 'pytest -k' patterns to skip tests which are # not expected to pass, e.g. requiring a database access. # default: # # The following variables can be read by ports and must not be modified: # # PYTHONBASE - The installation prefix of the chosen Python # interpreter, e.g. /usr/local # # PYTHON_DISTVERSION # - Version number suitable for ${DISTVERSION}. # # PYTHON_PORTSDIR - The port directory of the chosen Python interpreter # # PYTHON_REL - The release number of the chosen Python interpreter # without dots, e.g. 20706, 31114, ... # # PYTHON_SUFFIX - The major-minor release number of the chosen Python # interpreter without dots, e.g. 27, 310, ... # Used for prefixes and suffixes. # # PYTHON_BASESUFFIX - PYTHON_SUFFIX without the threaded ABI flag. # # PYTHON_TAG - Defined by PEP 3147, magic tag containing # implementation name and shorthand version, # primarily for bytecode files. Includes # preceding dot, e.g. .cpython-312, # .cpython-313, ... # # PYTHON_SOABI - Defined by PEP 3149, tag containing # implementation name, shorthand version # and ABI tags, primarily for compiled # extension modules. Includes preceding # dot, e.g. .cpython-313, .cpython-313t, # .cpython-313td, ... # # PYTHON_MAJOR_VER - The major release version of the chosen Python # interpreter, e.g. 2, 3, ... # # PYTHON_VER - The major-minor release version of the chosen Python # interpreter, e.g. 2.7, 3.12, ... # # PYTHON_BASEVER - PYTHON_VER without the threaded ABI flag. # # PYTHON_ABIVER - Additional ABI flags set by the chosen Python # interpreter, e.g. md # # PYTHON_INCLUDEDIR - Location of the Python include files. # default: ${PYTHONBASE}/include/${PYTHON_VERSION} # # PYTHON_LIBDIR - Base of the python library tree # default: ${PYTHONBASE}/lib/${PYTHON_VERSION} # # PYTHON_SITELIBDIR - Location of the site-packages tree. Don't change, # unless you know what you do. # default: ${PYTHON_LIBDIR}/site-packages # # There are PREFIX-clean variants of the PYTHON_*DIR variables above. # They are meant to be used by ports instead of the above variables, so the # ports respect ${PREFIX} (unless USE_PYTHON=pythonprefix is specified). # # PYTHONPREFIX_INCLUDEDIR default: ${PREFIX}/include/${PYTHON_VERSION} # PYTHONPREFIX_LIBDIR default: ${PREFIX}/lib/${PYTHON_VERSION} # PYTHONPREFIX_SITELIBDIR default: ${PYTHONPREFIX_LIBDIR}/site-packages # # PYTHON_PLATFORM - Python's idea of the OS release. # This is faked with ${OPSYS} and ${OSREL} until we # find out how to delay defining a variable until # after a certain target has been built. # # PYTHON_PKGNAMEPREFIX # - Use this as a ${PKGNAMEPREFIX} to distinguish # packages for different Python versions. # default: py${PYTHON_SUFFIX}- # # PYTHON_PKGNAMESUFFIX # - Use this as a ${PKGNAMESUFFIX} to distinguish # packages for different Python versions. # default: -py${PYTHON_SUFFIX} # # Using USES=python also will add some useful entries to SUB_LIST and PLIST_SUB: # # PYTHON_INCLUDEDIR=${PYTHONPREFIX_INCLUDEDIR} # PYTHON_LIBDIR=${PYTHONPREFIX_LIBDIR} # PYTHON_PLATFORM=${PYTHON_PLATFORM} # PYTHON_SITELIBDIR=${PYTHONPREFIX_SITELIBDIR} # PYTHON_SUFFIX=${PYTHON_SUFFIX} # PYTHON_BASESUFFIX=${PYTHON_BASESUFFIX} # PYTHON_VER=${PYTHON_VER} # PYTHON_BASEVER=${PYTHON_BASEVER} # PYTHON_VERSION=${PYTHON_VERSION} # # where PYTHON_INCLUDEDIR, PYTHON_LIBDIR and PYTHON_SITELIBDIR have their PREFIX # stripped for PLIST_SUB. # # PYTHON2 and PYTHON3 will also be set according to the Python version: # # PYTHON2="" PYTHON3="@comment " for Python 2.x # PYTHON2="@comment " PYTHON3="" for Python 3.x # # PYDISTUTILS_INSTALLNOSINGLE # - Deprecated without replacement # # Dependency lines of selected Python modules: # # PY_SETUPTOOLS - setuptools port based on USE_PYTHON=distutils # PYGAME - pygame port -# PYNUMPY - NumPy port # PY_MERCURIAL - mercurial port, PKGNAME varies based on default # Python version # PY_BOOST - Boost Python libraries port # # The following variables may be set by the user: # # PYTEST_ENABLE_ALL_TESTS - Enable tests skipped by PYTEST_BROKEN_TESTS # and PYTEST_IGNORED_TESTS. # PYTEST_ENABLE_BROKEN_TESTS - Enable tests skipped by PYTEST_BROKEN_TESTS. # PYTEST_ENABLE_IGNORED_TESTS - Enable tests skipped by PYTEST_IGNORED_TESTS. # # MAINTAINER: python@FreeBSD.org .if !defined(_INCLUDE_USES_PYTHON_MK) _INCLUDE_USES_PYTHON_MK= yes ZEROREGS_UNSAFE= yes # What Python version and what Python interpreters are currently supported? # When adding a version, please keep the comment in # Mk/bsd.default-versions.mk in sync. _PYTHON_VERSIONS= 3.11 3.12 3.13 3.13t 3.14 3.10 2.7 # preferred first _PYTHON_PORTBRANCH= 3.11 # ${_PYTHON_VERSIONS:[1]} _PYTHON_BASECMD= ${LOCALBASE}/bin/python _PYTHON_RELPORTDIR= lang/python # List all valid USE_PYTHON features here _VALID_PYTHON_FEATURES= allflavors \ autoplist \ concurrent \ cryptography_build \ cryptography \ cryptography_test \ cython \ cython_run \ cython_test \ cython0 \ cython0_run \ distutils \ flavors \ noegginfo \ noflavors \ nose \ nose2 \ optsuffix \ pep517 \ py3kplist \ pytest \ pythonprefix \ unittest \ unittest2 _INVALID_PYTHON_FEATURES= . for var in ${USE_PYTHON} . if empty(_VALID_PYTHON_FEATURES:M${var}) _INVALID_PYTHON_FEATURES+= ${var} . endif . endfor . if !empty(_INVALID_PYTHON_FEATURES) IGNORE= uses unknown USE_PYTHON features: ${_INVALID_PYTHON_FEATURES} . endif # Make each individual feature available as _PYTHON_FEATURE_ . for var in ${USE_PYTHON} _PYTHON_FEATURE_${var:C/=.*$//:tu}= ${var:C/.*=//:S/,/ /g} . endfor # distutils automatically generates flavors depending on the supported # versions. . if defined(_PYTHON_FEATURE_DISTUTILS) _PYTHON_FEATURE_FLAVORS= yes . endif # pep517 automatically generates flavors depending on the supported # versions. . if defined(_PYTHON_FEATURE_PEP517) _PYTHON_FEATURE_FLAVORS= yes . endif . if defined(_PYTHON_FEATURE_NOFLAVORS) .undef _PYTHON_FEATURE_FLAVORS . endif # Make sure that no dependency or some other environment variable # pollutes the build/run dependency detection .undef _PYTHON_BUILD_DEP .undef _PYTHON_RUN_DEP .undef _PYTHON_TEST_DEP _PYTHON_ARGS= ${python_ARGS:S/,/ /g} . if ${_PYTHON_ARGS:Mpatch} _PYTHON_PATCH_DEP= yes _PYTHON_ARGS:= ${_PYTHON_ARGS:Npatch} . endif . if ${_PYTHON_ARGS:Mbuild} _PYTHON_BUILD_DEP= yes _PYTHON_ARGS:= ${_PYTHON_ARGS:Nbuild} . endif . if ${_PYTHON_ARGS:Mrun} _PYTHON_RUN_DEP= yes _PYTHON_ARGS:= ${_PYTHON_ARGS:Nrun} . endif . if ${_PYTHON_ARGS:Mtest} _PYTHON_TEST_DEP= yes _PYTHON_ARGS:= ${_PYTHON_ARGS:Ntest} . endif . if ${_PYTHON_ARGS:Menv} PYTHON_NO_DEPENDS= yes _PYTHON_ARGS:= ${_PYTHON_ARGS:Nenv} . endif # The port does not specify a build, run or test dependency, assume all are # required. . if !defined(_PYTHON_BUILD_DEP) && !defined(_PYTHON_RUN_DEP) && \ !defined(_PYTHON_TEST_DEP) && !defined(PYTHON_NO_DEPENDS) _PYTHON_BUILD_DEP= yes _PYTHON_RUN_DEP= yes _PYTHON_TEST_DEP= yes . endif . if ${_PYTHON_ARGS} == 2.7 DEV_WARNING+= "lang/python27 reached End of Life and will be removed somewhere in the future, please convert to a modern version of python" . elif ${_PYTHON_ARGS} == 2 DEV_ERROR+= "USES=python:2 is no longer supported, use USES=python:2.7" . elif ${_PYTHON_ARGS} == 3 DEV_ERROR+= "USES=python:3 is no longer supported, use USES=python:3.11+ or an appropriate version range" . endif # ${_PYTHON_ARGS} == 2.7 _PYTHON_VERSION:= ${PYTHON_DEFAULT} . if empty(_PYTHON_ARGS) _PYTHON_ARGS= 3.10+ . endif # Validate Python version whether it meets the version restriction. _PYTHON_VERSION_CHECK:= ${_PYTHON_ARGS:C/^([1-9]\.[1-9]?[0-9])$/\1-\1/} _PYTHON_VERSION_MINIMUM_TMP:= ${_PYTHON_VERSION_CHECK:C/([1-9]\.[1-9]?[0-9])[-+].*/\1/} _PYTHON_VERSION_MINIMUM:= ${_PYTHON_VERSION_MINIMUM_TMP:M[1-9].[0-9]}${_PYTHON_VERSION_MINIMUM_TMP:M[1-9].[1-9][0-9]} _PYTHON_VERSION_MAXIMUM_TMP:= ${_PYTHON_VERSION_CHECK:C/.*-([1-9]\.[1-9]?[0-9])/\1/} _PYTHON_VERSION_MAXIMUM:= ${_PYTHON_VERSION_MAXIMUM_TMP:M[1-9].[0-9]}${_PYTHON_VERSION_MAXIMUM_TMP:M[1-9].[1-9][0-9]} # At this point we should have no argument left in ${_PYTHON_ARGS} # except a version spec _V1= [1-9].[0-9] _V2= [1-9].[1-9][0-9] _PYTHON_ARGS:= ${_PYTHON_ARGS:N${_V1}-${_V1}:N${_V1}-${_V2}:N${_V2}-${_V2}:N${_V1}:N${_V2}:N${_V1}+:N${_V2}+:N-${_V1}:N-${_V2}} . if !empty(_PYTHON_ARGS) IGNORE= uses unknown USES=python arguments: ${_PYTHON_ARGS} . endif # Pattern to convert python versions (X.Y or X.YY) to comparable format X.YY _VC= C/^([1-9]\.)([0-9])$$/\10\2/ .undef _PYTHON_VERSION_NONSUPPORTED . if !empty(_PYTHON_VERSION_MINIMUM) && (${_PYTHON_VERSION:${_VC}:S/t$//} < ${_PYTHON_VERSION_MINIMUM:${_VC}:S/t$//}) _PYTHON_VERSION_NONSUPPORTED= ${_PYTHON_VERSION_MINIMUM} at least . elif !empty(_PYTHON_VERSION_MAXIMUM) && (${_PYTHON_VERSION:${_VC}:S/t$//} > ${_PYTHON_VERSION_MAXIMUM:${_VC}:S/t$//}) _PYTHON_VERSION_NONSUPPORTED= ${_PYTHON_VERSION_MAXIMUM} at most . endif # If we have an unsupported version of Python, try another. . if defined(_PYTHON_VERSION_NONSUPPORTED) .undef _PYTHON_VERSION . for ver in ${PYTHON_DEFAULT} ${PYTHON2_DEFAULT} ${_PYTHON_VERSIONS} __VER= ${ver} . if !defined(_PYTHON_VERSION) && \ !(!empty(_PYTHON_VERSION_MINIMUM) && ( \ ${__VER:${_VC}:S/t$//} < ${_PYTHON_VERSION_MINIMUM:${_VC}:S/t$//})) && \ !(!empty(_PYTHON_VERSION_MAXIMUM) && ( \ ${__VER:${_VC}:S/t$//} > ${_PYTHON_VERSION_MAXIMUM:${_VC}:S/t$//})) _PYTHON_VERSION= ${ver} . endif . endfor . if !defined(_PYTHON_VERSION) IGNORE= needs an unsupported version of Python . endif . endif # defined(_PYTHON_VERSION_NONSUPPORTED) # Automatically generates FLAVORS if empty . if empty(FLAVORS) && defined(_PYTHON_FEATURE_FLAVORS) . undef _VALID_PYTHON_VERSIONS . for ver in ${PYTHON_DEFAULT} ${PYTHON2_DEFAULT} ${_PYTHON_VERSIONS} __VER= ${ver} . if !(!empty(_PYTHON_VERSION_MINIMUM) && ( \ ${__VER:${_VC}:S/t$//} < ${_PYTHON_VERSION_MINIMUM:${_VC}:S/t$//})) && \ !(!empty(_PYTHON_VERSION_MAXIMUM) && ( \ ${__VER:${_VC}:S/t$//} > ${_PYTHON_VERSION_MAXIMUM:${_VC}:S/t$//})) . if empty(_VALID_PYTHON_VERSIONS:M${ver}) _VALID_PYTHON_VERSIONS+= ${ver} . endif . endif . endfor # Get all possible flavors depending on version requirements . if defined(_VALID_PYTHON_VERSIONS) _ALL_PYTHON_FLAVORS= ${_VALID_PYTHON_VERSIONS:S/.//:S/^/py/} . else _ALL_PYTHON_FLAVORS= ${_PYTHON_VERSIONS:S/.//:S/^/py/} . endif # Decide how many flavors we want. By default, only generate the default # versions. . if defined(BUILD_ALL_PYTHON_FLAVORS) || defined(_PYTHON_FEATURE_ALLFLAVORS) FLAVORS= ${_ALL_PYTHON_FLAVORS} . else . for _v in ${PYTHON_DEFAULT} ${PYTHON2_DEFAULT} _f= py${_v:S/.//} . if ${_ALL_PYTHON_FLAVORS:M${_f}} && !${FLAVORS:M${_f}} . if !empty(FLAVORS) FLAVORS:= ${FLAVORS} ${_f} . else FLAVORS:= ${_f} . endif . endif . endfor . endif . if !empty(FLAVORS) && empty(FLAVOR) FLAVOR= ${FLAVORS:[1]} . endif . endif . if ${FLAVOR:Mpy[23][0-9]}${FLAVOR:Mpy[23][1-9][0-9]}${FLAVOR:Mpy31[3-9]t} _PYTHON_VERSION= ${FLAVOR:S/py//:C/(.)/\1./} . endif . if !empty(FLAVOR) && ${_PYTHON_VERSION} != ${PYTHON_DEFAULT} . if defined(_PYTHON_FEATURE_OPTSUFFIX) DEV_WARNING+= "USE_PYTHON=optsuffix is deprecated, consider migrating to using unconditional PKGNAMESUFFIX or PKGNAMEPREFIX" PKGNAMESUFFIX= ${PYTHON_PKGNAMESUFFIX} . endif . endif # To avoid having dependencies with @ and empty flavor: # _PYTHON_VERSION is either set by (first that matches): # - If using Python flavors, from the current Python flavor # - If using a version restriction (USES=python:3.11+), from the first # acceptable default Python version. # - From PYTHON_DEFAULT PY_FLAVOR= py${_PYTHON_VERSION:S/.//} PYTHON_VERSION= python${_PYTHON_VERSION} # Got the correct python version, set some publicly accessible variables PYTHON_VER= ${_PYTHON_VERSION} PYTHON_BASEVER= ${PYTHON_VER:S/t$//} PYTHON_SUFFIX= ${_PYTHON_VERSION:S/.//g} PYTHON_BASESUFFIX= ${PYTHON_SUFFIX:S/t$//} PYTHON_MAJOR_VER= ${PYTHON_VER:R} PYTHON_REL= # empty PYTHON_ABIVER= # empty PYTHON_PORTSDIR= ${_PYTHON_RELPORTDIR}${PYTHON_SUFFIX} # Protect partial checkouts from Mk/Scripts/functions.sh:export_ports_env(). . if !defined(_PORTS_ENV_CHECK) || exists(${PORTSDIR}/${PYTHON_PORTSDIR}) .include "${PORTSDIR}/${PYTHON_PORTSDIR:S/t$//}/Makefile.version" . endif # Create a 5 integer version string, prefixing 0 to the minor and patch # tokens if it's a single character. Only use the first 3 tokens of # DISTVERSION to stay consistent regardless of pre-release or ABI flags PYTHON_REL= ${PYTHON_DISTVERSION:C/^([0-9]+\.[0-9]+\.[0-9]+).*/\1/:C/\.([0-9])$/.0\1/:C/\.([0-9]\.[0-9]+)/.0\1/:S/.//g} # Might be overridden by calling ports PYTHON_CMD?= ${_PYTHON_BASECMD}${_PYTHON_VERSION} . if ${PYTHON_MAJOR_VER} > 2 . if exists(${PYTHON_CMD}-config) PYTHON_ABIVER!= ${PYTHON_CMD}-config --abiflags . endif . endif . if ${PYTHON_REL} >= 30807 PYTHON_TAG= .cpython-${PYTHON_BASESUFFIX} PYTHON_SOABI= .cpython-${PYTHON_SUFFIX} . else PYTHON_TAG= # empty PYTHON_SOABI= # empty . endif . if ${PYTHON_MAJOR_VER} < 3 DEPRECATED?= Uses Python 2.7 which is EOLed upstream . endif . if !defined(PYTHONBASE) PYTHONBASE!= (${PYTHON_CMD} -c 'import sys; print(sys.prefix)' \ 2> /dev/null || ${ECHO_CMD} ${LOCALBASE}) | ${TAIL} -1 . endif _EXPORTED_VARS+= PYTHONBASE PYTHON_INCLUDEDIR= ${PYTHONBASE}/include/python${_PYTHON_VERSION}${PYTHON_ABIVER} PYTHON_LIBDIR= ${PYTHONBASE}/lib/python${_PYTHON_VERSION} PYTHON_PLATFORM= ${OPSYS:tl}${OSREL:C/\.[0-9.]*//} PYTHON_SITELIBDIR= ${PYTHON_LIBDIR}/site-packages PYTHON_PKGNAMEPREFIX= py${PYTHON_SUFFIX}- PYTHON_PKGNAMESUFFIX= -py${PYTHON_SUFFIX} PYTHONPREFIX_INCLUDEDIR= ${PYTHON_INCLUDEDIR:S;${PYTHONBASE};${PREFIX};} PYTHONPREFIX_LIBDIR= ${PYTHON_LIBDIR:S;${PYTHONBASE};${PREFIX};} PYTHONPREFIX_SITELIBDIR= ${PYTHON_SITELIBDIR:S;${PYTHONBASE};${PREFIX};} # Used for recording the installed files. _PYTHONPKGLIST= ${WRKDIR}/.PLIST.pymodtmp # Ports bound to a certain python version SHOULD # - use the PYTHON_PKGNAMEPREFIX # - use directories using the PYTHON_PKGNAMEPREFIX # - install binaries using the required PYTHON_VER, with # the default python version creating a symlink to the original binary # name (for staging-aware ports). # # What makes a port 'bound' to a certain python version? # - it installs data into PYTHON_SITELIBDIR, PYTHON_INCLUDEDIR, ... # - it links against libpython*.so # - it uses USE_PYTHON=distutils # # cryptography* support . if ${PYCRYPTOGRAPHY_DEFAULT} == rust CRYPTOGRAPHY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cryptography>=46.0.5,1<47,1:security/py-cryptography@${PY_FLAVOR} . else CRYPTOGRAPHY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cryptography-legacy>=3.4.8_3,1:security/py-cryptography-legacy@${PY_FLAVOR} . endif . if defined(_PYTHON_FEATURE_CRYPTOGRAPHY_BUILD) BUILD_DEPENDS+= ${CRYPTOGRAPHY_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CRYPTOGRAPHY) RUN_DEPENDS+= ${CRYPTOGRAPHY_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CRYPTOGRAPHY_TEST) TEST_DEPENDS+= ${CRYPTOGRAPHY_DEPENDS} . endif # cython* support CYTHON_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython>=3.2.4:lang/cython@${PY_FLAVOR} CYTHON0_DEPENDS=${PYTHON_PKGNAMEPREFIX}cython0>=0.29.37<3:lang/cython0@${PY_FLAVOR} . if defined(_PYTHON_FEATURE_CYTHON) BUILD_DEPENDS+= ${CYTHON_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CYTHON_RUN) RUN_DEPENDS+= ${CYTHON_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CYTHON_TEST) TEST_DEPENDS+= ${CYTHON_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CYTHON0) BUILD_DEPENDS+= ${CYTHON0_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CYTHON0_RUN) RUN_DEPENDS+= ${CYTHON0_DEPENDS} . endif . if defined(_PYTHON_FEATURE_CONCURRENT) . if !defined(_PYTHON_FEATURE_FLAVORS) && (${_PYTHON_VERSION_MINIMUM:M3*} || ${_PYTHON_VERSION_MAXIMUM:M2*}) DEV_WARNING+= "USE_PYTHON=concurrent when only one of Python 2 or 3 is supported AND not using flavors does not make any sense" . endif _USES_POST+= uniquefiles:dirs . if defined(_PYTHON_FEATURE_FLAVORS) && ${FLAVOR} == ${FLAVORS:[1]} UNIQUE_DEFAULT_LINKS= yes . elif !defined(_PYTHON_FEATURE_FLAVORS) && ${_PYTHON_VERSION} == ${PYTHON_DEFAULT} UNIQUE_DEFAULT_LINKS= yes . else UNIQUE_DEFAULT_LINKS= no . endif UNIQUE_PREFIX= ${PYTHON_PKGNAMEPREFIX} UNIQUE_SUFFIX= -${PYTHON_VER} UNIQUE_SUFFIX_TYPES+= SUFFIX_MAN UNIQUE_SUFFIX_MAN_WITH_EXT= .[1-9ln] UNIQUE_SUFFIX_MAN_EXTRA_EXT= .gz . if defined(_PYTHON_FEATURE_AUTOPLIST) _UNIQUE_FIND_SUFFIX_FILES= ${SED} -e 's|^${PREFIX}/||' ${_PYTHONPKGLIST} ${TMPPLIST} . else _UNIQUE_FIND_SUFFIX_FILES= ${SED} -e 's|^${PREFIX}/||' ${TMPPLIST} 2>/dev/null . endif UNIQUE_FIND_SUFFIX_FILES+= ${_UNIQUE_FIND_SUFFIX_FILES} | \ ${EGREP} -he '^bin/.*$$|^sbin/.*$$|^libexec/.*$$' UNIQUE_FIND_SUFFIX_MAN_FILES+= ${_UNIQUE_FIND_SUFFIX_FILES} | \ ${EGREP} -he '^man/man[1-9ln]/.*$$|^share/man/man[1-9ln]/.*$$' . endif # defined(_PYTHON_FEATURE_CONCURRENT) _CURRENTPORT:= ${PKGNAMEPREFIX}${PORTNAME}${PKGNAMESUFFIX} . if defined(_PYTHON_FEATURE_DISTUTILS) && \ ${_CURRENTPORT} != ${PYTHON_PKGNAMEPREFIX}setuptools && \ ${_CURRENTPORT} != ${PYTHON_PKGNAMEPREFIX}setuptools58 && \ ${_CURRENTPORT} != ${PYTHON_PKGNAMEPREFIX}setuptools44 . if ${PYTHON_VER} == 2.7 BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools44>0:devel/py-setuptools44@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools44>0:devel/py-setuptools44@${PY_FLAVOR} . else BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools>=63.1.0:devel/py-setuptools@${PY_FLAVOR} . endif . endif . if defined(_PYTHON_FEATURE_PEP517) . if ${PYTHON_MAJOR_VER} < 3 DEV_ERROR+= "USES=python:2.7 is incompatible with USE_PYTHON=pep517" . endif . if defined(_PYTHON_FEATURE_DISTUTILS) DEV_ERROR+= "USE_PYTHON=distutils is incompatible with USE_PYTHON=pep517" . endif . if defined(_PYTHON_FEATURE_PY3KPLIST) DEV_ERROR+= "USE_PYTHON=py3kplist is incompatible with USE_PYTHON=pep517" . endif . if defined(_PYTHON_FEATURE_NOEGGINFO) DEV_ERROR+= "USE_PYTHON=noegginfo is incompatible with USE_PYTHON=pep517" . endif . endif # distutils support PYSETUP?= setup.py PYDISTUTILS_SETUP?= -c \ "import sys; import setuptools; \ __file__='${PYSETUP}'; sys.argv[0]='${PYSETUP}'; \ exec(compile(open(__file__, 'rb').read().replace(b'\\r\\n', b'\\n'), __file__, 'exec'))" PYDISTUTILS_CONFIGUREARGS?= # empty PYDISTUTILS_BUILDARGS?= # empty PYDISTUTILS_INSTALLARGS?= -c -O1 --prefix=${PREFIX} . if defined(_PYTHON_FEATURE_DISTUTILS) . if !defined(PYDISTUTILS_INSTALLNOSINGLE) PYDISTUTILS_INSTALLARGS+= --single-version-externally-managed . endif PYDISTUTILS_INSTALLARGS+= --root=${STAGEDIR} . endif PYDISTUTILS_INSTALLARGS:= --record ${_PYTHONPKGLIST} \ ${PYDISTUTILS_INSTALLARGS} PYDISTUTILS_PKGNAME?= ${PORTNAME} PYDISTUTILS_PKGVERSION?=${PORTVERSION} PYDISTUTILS_EGGINFO?= ${PYDISTUTILS_PKGNAME:C/[^A-Za-z0-9.]+/_/g}-${PYDISTUTILS_PKGVERSION:C/[^A-Za-z0-9.]+/_/g}-py${PYTHON_VER}.egg-info PYDISTUTILS_EGGINFODIR?=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # PEP-517 support PEP517_BUILD_CMD?= ${PYTHON_CMD} -m build --no-isolation --wheel ${PEP517_BUILD_CONFIG_SETTING} PEP517_BUILD_DEPEND?= ${PYTHON_PKGNAMEPREFIX}build>=0:devel/py-build@${PY_FLAVOR} PEP517_INSTALL_CMD?= ${PYTHON_CMD} -m installer --destdir ${STAGEDIR} --prefix ${PREFIX} ${BUILD_WRKSRC}/dist/${PORTNAME:C|[-_]+|_|g}-${DISTVERSION}*.whl PEP517_INSTALL_DEPEND?= ${PYTHON_PKGNAMEPREFIX}installer>=0:devel/py-installer@${PY_FLAVOR} # nose support . if defined(_PYTHON_FEATURE_NOSE) TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}nose>=0:devel/py-nose@${PY_FLAVOR} . endif # nose2 support . if defined(_PYTHON_FEATURE_NOSE2) TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}nose2>=0:devel/py-nose2@${PY_FLAVOR} . endif # pytest support . if defined(_PYTHON_FEATURE_PYTEST) TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pytest>=7,1:devel/py-pytest@${PY_FLAVOR} PYTEST_BROKEN_TESTS?= # empty PYTEST_IGNORED_TESTS?= # empty _PYTEST_SKIPPED_TESTS?= # empty . if !defined(PYTEST_ENABLE_ALL_TESTS) . if !defined(PYTEST_ENABLE_BROKEN_TESTS) _PYTEST_SKIPPED_TESTS+= ${PYTEST_BROKEN_TESTS} . endif . if !defined(PYTEST_ENABLE_IGNORED_TESTS) _PYTEST_SKIPPED_TESTS+= ${PYTEST_IGNORED_TESTS} . endif . endif # !defined(PYTEST_ENABLE_ALL_TESTS) _PYTEST_FILTER_EXPRESSION= ${_PYTEST_SKIPPED_TESTS:C/^(.)/and not \1/:tW:C/^and //} . endif # defined(_PYTHON_FEATURE_PYTEST) # unittest2 support . if defined(_PYTHON_FEATURE_UNITTEST2) TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}unittest2>=0:devel/py-unittest2@${PY_FLAVOR} . endif . if !defined(_PYTHON_FEATURE_NOEGGINFO) && \ !defined(_PYTHON_FEATURE_AUTOPLIST) && \ defined(_PYTHON_FEATURE_DISTUTILS) && \ defined(PYTHON_REL) _USES_stage+= 933:add-plist-egginfo add-plist-egginfo: . for egginfo in ${PYDISTUTILS_EGGINFO} if [ -d "${PYDISTUTILS_EGGINFODIR}/${egginfo}" ]; then \ ${LS} ${PYDISTUTILS_EGGINFODIR}/${egginfo} | while read f; do \ ${ECHO_CMD} ${PYDISTUTILS_EGGINFODIR:S;^${STAGEDIR}${PREFIX}/;;}/${egginfo}/$${f} >> ${TMPPLIST}; \ done; \ fi; . endfor . endif . if defined(_PYTHON_FEATURE_AUTOPLIST) && (defined(_PYTHON_FEATURE_DISTUTILS) || defined(_PYTHON_FEATURE_PEP517)) _RELSITELIBDIR= ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} _RELLIBDIR= ${PYTHONPREFIX_LIBDIR:S;${PREFIX}/;;} _USES_stage+= 934:add-plist-pymod add-plist-pymod: @${SED} -e 's|^"\(.*\)"$$|\1|' \ -e 's|^${STAGEDIR}${PREFIX}/||' \ -e 's|^${PREFIX}/||' \ -e 's|^\(man/.*man[0-9]\)/\(.*\.[0-9]\)$$|\1/\2.gz|' \ -e 's|^\(share/man/.*man[0-9]\)/\(.*\.[0-9]\)$$|\1/\2.gz|' \ -e 's|[[:alnum:]|[:space:]]*/\.\./*||g; s|/\./|/|g' \ ${_PYTHONPKGLIST} | ${SORT} >> ${TMPPLIST} . else . if ${PYTHON_REL} >= 30200 && defined(_PYTHON_FEATURE_PY3KPLIST) # When Python version is 3.2+ we rewrite all the filenames # of TMPPLIST that end with .py[co], so that they conform # to PEP 3147 (see https://www.python.org/dev/peps/pep-3147/) _PYMAGICTAG= ${PYTHON_CMD} -c 'import sys; print(sys.implementation.cache_tag)' _USES_stage+= 935:add-plist-python add-plist-python: @${AWK} '\ /\.py[co]$$/ && !($$0 ~ "/" pc "/") {id = match($$0, /\/[^\/]+\.py[co]$$/); if (id != 0) {d = substr($$0, 1, RSTART - 1); dirs[d] = 1}; sub(/\.pyc$$/, "." mt "&"); sub(/\.pyo$$/, "." mt "." pyo); sub(/[^\/]+\.py[co]$$/, pc "/&"); print; next} \ /^@dirrm / {d = substr($$0, 8); if (d in dirs) {print $$0 "/" pc}; print $$0; next} \ /^@dirrmtry / {d = substr($$0, 11); if (d in dirs) {print $$0 "/" pc}; print $$0; next} \ {print} \ ' \ pc="__pycache__" mt="$$(${_PYMAGICTAG})" pyo="opt-1.pyc" \ ${TMPPLIST} > ${TMPPLIST}.pyc_tmp @${MV} ${TMPPLIST}.pyc_tmp ${TMPPLIST} . endif # ${PYTHON_REL} >= 30200 && defined(_PYTHON_FEATURE_PY3KPLIST) . endif # defined(_PYTHON_FEATURE_AUTOPLIST) && (defined(_PYTHON_FEATURE_DISTUTILS) || defined(_PYTHON_FEATURE_PEP517)) # Fix for programs that build python from a GNU auto* environment CONFIGURE_ENV+= PYTHON="${PYTHON_CMD}" # By default CMake picks up the highest available version of Python package. # Enforce the version required by the port or the default. CMAKE_ARGS+= -DPython_ADDITIONAL_VERSIONS=${PYTHON_VER} CMAKE_ARGS+= -DPython_EXECUTABLE:FILEPATH="${PYTHON_CMD}" CMAKE_ARGS+= -DPython${PYTHON_MAJOR_VER}_EXECUTABLE:FILEPATH="${PYTHON_CMD}" # Python 3rd-party modules PYGAME= ${PYTHON_PKGNAMEPREFIX}game>0:devel/py-game@${PY_FLAVOR} -PYNUMPY= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16<1.27:math/py-numpy1@${PY_FLAVOR} . if defined(_PYTHON_FEATURE_DISTUTILS) . if ${PYTHON_MAJOR_VER} < 3 PY_SETUPTOOLS= ${PYTHON_PKGNAMEPREFIX}setuptools44>0:devel/py-setuptools44@${PY_FLAVOR} . else #PY_SETUPTOOLS= ${PYTHON_PKGNAMEPREFIX}setuptools58>0:devel/py-setuptools58@${PY_FLAVOR} PY_SETUPTOOLS= ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} . endif . else PY_SETUPTOOLS= ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} . endif # Common Python modules that can be needed but only for some versions of Python. . if ${PYTHON_REL} < 31400 PY_BACKPORTS.ZSTD= ${PYTHON_PKGNAMEPREFIX}backports.zstd>=1.0.0:devel/py-backports.zstd@${PY_FLAVOR} . endif . if ${PYTHON_REL} < 31100 PY_EXCEPTIONGROUP= ${PYTHON_PKGNAMEPREFIX}exceptiongroup>=1.1.1:devel/py-exceptiongroup@${PY_FLAVOR} PY_TOMLI= ${PYTHON_PKGNAMEPREFIX}tomli>=2.3<3:textproc/py-tomli@${PY_FLAVOR} PY_TYPING_EXTENSIONS= ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} . endif . if ${PYTHON_REL} >= 30000 PY_PILLOW= ${PYTHON_PKGNAMEPREFIX}pillow>=7.0.0:graphics/py-pillow@${PY_FLAVOR} . endif . if ${PYTHON_VER} != ${PYTHON_DEFAULT} PY_MERCURIAL= ${PYTHON_PKGNAMEPREFIX}mercurial>=5.9:devel/mercurial@${PY_FLAVOR} . else PY_MERCURIAL= mercurial>=5.9:devel/mercurial@${PY_FLAVOR} . endif CMAKE_ARGS+= -DBOOST_PYTHON_SUFFIX:STRING=${PYTHON_SUFFIX} PY_BOOST_LIB= boost_python${PYTHON_SUFFIX} PY_BOOST= lib${PY_BOOST_LIB}.so:devel/boost-python-libs@${PY_FLAVOR} # dependencies . for _stage in PATCH BUILD RUN TEST . if defined(_PYTHON_${_stage}_DEP) ${_stage}_DEPENDS+= ${PYTHON_CMD}:${PYTHON_PORTSDIR} . endif . endfor # set $PREFIX as Python's one . if defined(_PYTHON_FEATURE_PYTHONPREFIX) PREFIX= ${PYTHONBASE} . endif # Substitutions for SUB_FILES SUB_LIST+= PYTHON_INCLUDEDIR=${PYTHONPREFIX_INCLUDEDIR} \ PYTHON_LIBDIR=${PYTHONPREFIX_LIBDIR} \ PYTHON_PLATFORM=${PYTHON_PLATFORM} \ PYTHON_SITELIBDIR=${PYTHONPREFIX_SITELIBDIR} \ PYTHON_SUFFIX=${PYTHON_SUFFIX} \ PYTHON_BASESUFFIX=${PYTHON_BASESUFFIX} \ PYTHON_TAG=${PYTHON_TAG} \ PYTHON_SOABI=${PYTHON_SOABI} \ PYTHON_VER=${PYTHON_VER} \ PYTHON_BASEVER=${PYTHON_BASEVER} \ PYTHON_VERSION=${PYTHON_VERSION} # Substitutions for pkg-plist # Use a short form of the PYTHONPREFIX_*DIR variables; we don't need the # base directory in the plist file. PLIST_SUB+= PYTHON_INCLUDEDIR=${PYTHONPREFIX_INCLUDEDIR:S;${PREFIX}/;;} \ PYTHON_LIBDIR=${PYTHONPREFIX_LIBDIR:S;${PREFIX}/;;} \ PYTHON_PLATFORM=${PYTHON_PLATFORM} \ PYTHON_SITELIBDIR=${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} \ PYTHON_SUFFIX=${PYTHON_SUFFIX} \ PYTHON_BASESUFFIX=${PYTHON_BASESUFFIX} \ PYTHON_TAG=${PYTHON_TAG} \ PYTHON_SOABI=${PYTHON_SOABI} \ PYTHON_VER=${PYTHON_VER} \ PYTHON_BASEVER=${PYTHON_BASEVER} \ PYTHON_VERSION=${PYTHON_VERSION} . if ${PYTHON_MAJOR_VER} < 3 SUB_LIST+= PYTHON2="" PYTHON3="@comment " PLIST_SUB+= PYTHON2="" PYTHON3="@comment " . else SUB_LIST+= PYTHON2="@comment " PYTHON3="" PLIST_SUB+= PYTHON2="@comment " PYTHON3="" . endif _USES_POST+= python .endif # _INCLUDE_USES_PYTHON_MK .if defined(_POSTMKINCLUDED) && !defined(_INCLUDE_USES_PYTHON_POST_MK) _INCLUDE_USES_PYTHON_POST_MK= yes # py-distutils support PYDISTUTILS_CONFIGURE_TARGET?= config PYDISTUTILS_BUILD_TARGET?= build PYDISTUTILS_INSTALL_TARGET?= install . if defined(_PYTHON_FEATURE_DISTUTILS) LDSHARED?= ${CC} -shared MAKE_ENV+= LDSHARED="${LDSHARED}" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= . if !target(do-configure) && !defined(HAS_CONFIGURE) && !defined(GNU_CONFIGURE) do-configure: @(cd ${BUILD_WRKSRC}; ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_CONFIGURE_TARGET} ${PYDISTUTILS_CONFIGUREARGS}) . endif . if !target(do-build) do-build: @(cd ${BUILD_WRKSRC}; ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_BUILD_TARGET} ${PYDISTUTILS_BUILDARGS}) . endif . if !target(do-install) do-install: @(cd ${INSTALL_WRKSRC}; ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_INSTALL_TARGET} ${PYDISTUTILS_INSTALLARGS}) . endif . endif # defined(_PYTHON_FEATURE_DISTUTILS) . if defined(_PYTHON_FEATURE_PEP517) . if !empty(PEP517_BUILD_DEPEND) BUILD_DEPENDS+= ${PEP517_BUILD_DEPEND} . endif . if !empty(PEP517_INSTALL_DEPEND) BUILD_DEPENDS+= ${PEP517_INSTALL_DEPEND} . endif . if !target(do-configure) && !defined(HAS_CONFIGURE) && !defined(GNU_CONFIGURE) do-configure: @${DO_NADA} . endif . if !target(do-build) do-build: @cd ${BUILD_WRKSRC} && ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PEP517_BUILD_CMD} . endif . if !target(do-install) do-install: @${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} @cd ${INSTALL_WRKSRC} && ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PEP517_INSTALL_CMD} @${PYTHON_CMD} -B ${PORTSDIR}/Mk/Scripts/strip_RECORD.py \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME:C|[-_]+|_|g}-${DISTVERSION}*.dist-info/RECORD >> ${_PYTHONPKGLIST} @${REINPLACE_CMD} \ -e '/\.pyc$$/d' \ -e 's|^|${PYTHONPREFIX_SITELIBDIR}/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../etc/|etc/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../bin/|bin/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../include/|include/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../lib/|lib/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../libdata/|libdata/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../libexec/|libexec/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../man/|man/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../sbin/|sbin/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../share/|share/|' \ ${_PYTHONPKGLIST} @cd ${STAGEDIR}${PREFIX} && ${FIND} lib -name '*.pyc' >> ${_PYTHONPKGLIST} . endif . endif # defined(_PYTHON_FEATURE_PEP517) . if defined(_PYTHON_FEATURE_NOSE) . if !target(do-test) do-test: cd ${TEST_WRKSRC} && ${SETENVI} ${WRK_ENV} ${TEST_ENV} ${PYTHON_CMD} -m nose ${TEST_ARGS:NDESTDIR=*} -v . endif . endif # defined(_PYTHON_FEATURE_NOSE) . if defined(_PYTHON_FEATURE_NOSE2) . if !target(do-test) do-test: cd ${TEST_WRKSRC} && ${SETENVI} ${WRK_ENV} ${TEST_ENV} ${PYTHON_CMD} -m nose2 ${TEST_ARGS:NDESTDIR=*} -v . endif . endif # defined(_PYTHON_FEATURE_NOSE2) . if defined(_PYTHON_FEATURE_PYTEST) . if !target(do-test) do-test: cd ${TEST_WRKSRC} && ${SETENVI} ${WRK_ENV} ${TEST_ENV} ${PYTHON_CMD} -m pytest -k '${_PYTEST_FILTER_EXPRESSION}' -rs -v -o addopts= ${TEST_ARGS:NDESTDIR=*} . endif . endif # defined(_PYTHON_FEATURE_PYTEST) . if defined(_PYTHON_FEATURE_UNITTEST) . if !target(do-test) do-test: cd ${TEST_WRKSRC} && ${SETENVI} ${WRK_ENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest ${TEST_ARGS:NDESTDIR=*} -v . endif . endif # defined(_PYTHON_FEATURE_UNITTEST) . if defined(_PYTHON_FEATURE_UNITTEST2) . if !target(do-test) do-test: cd ${TEST_WRKSRC} && ${SETENVI} ${WRK_ENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest2 ${TEST_ARGS:NDESTDIR=*} -v . endif . endif # defined(_PYTHON_FEATURE_UNITTEST2) .endif # defined(_POSTMKINCLUDED) && !defined(_INCLUDE_USES_PYTHON_POST_MK) diff --git a/Tools/scripts/ai-master-prompt.md b/Tools/scripts/ai-master-prompt.md index e14f45c92651..57d0bbfc4e4f 100644 --- a/Tools/scripts/ai-master-prompt.md +++ b/Tools/scripts/ai-master-prompt.md @@ -1,53 +1,52 @@ # Project Context: FreeBSD ports ## General Instructions - Individual port directories are under category directories: {category}/{port directory} - In order to perform operations on an individual port you need to change directory into this port. - In every port's directory there is a Makefile. - WRKDIR of every port can be determined by the command 'make -V WRKDIR' - WRKSRC of every port can be determined by the command 'make -V WRKSRC' - When any port is updated, the distinfo file can be regenerated using the 'make makesum' command. - Any port can download and extract the source files using the 'make patch' command. - Working directory can be removed (cleaned) using the 'make clean' command. - PORTREVISION should be removed when DISTVERSION or PORTVERSION is updated. - Any FreeBSD package that is needed can be installed using the command 'sudo pkg install -A {package name}'. - In case if any work* directories are present in the port directory before the port update such directories should be removed by the 'make clean' command. - The USES variable in port's Makefile defines what type of port this is. - When USES contains the word 'gmake' this is a port that is built using GNU Make (using the the gmake executable). - When USES contains the word 'cmake' this is a port that is built using cmake. - When USES contains the word 'python' this is a Python based port. - When USES contains the word 'cargo' this is a Rust based port. - When USES contains the word 'cabal' this is a Haskell based port. - Port uses GitHub to fetch distfiles if it has the USE_GITHUB=yes line. - Every port has a maintainer, maintainer's e-mail address is in the MAINTAINER variable. ### Instructions for ports that use GitHub to fetch distfiles - GitHub account name of such ports is in GH_ACCOUNT, or otherwise PORTNAME is used as an account name. - GitHub project name of such ports is in GH_PROJECT, or otherwise PORTNAME is used as a project name. - The GitHub git URL is constructed as https://github.com/{GH_ACCOUNT}/{GH_PROJECT}.git - The latest released version of a git URL can be determined using the command '../../Tools/scripts/git-get-latest-remote-version.sh {Git-URL} {DISTVERSIONPREFIX}' ### Instructions for Python based ports - The latest released version of the software can be determined using the command '../../Tools/scripts/pypi-get-latest-version.sh {python project name}' - Dependencies need to be updated when the port is updated. They need to be compared with the dependency requirements set in the project. - setuptools build dependency should never be added to BUILD_DEPENDS, and instead the distutils element should be present in USE_PYTHON. -- numpy dependency should be added as ${PYNUMPY} instead of the usual syntax. No version information should be added in this case. - pillow dependency should be added as ${PY_PILLOW} instead of the usual syntax. No version information should be added in this case. - The cython build dependency should never be added to BUILD_DEPENDS. Instead, the cython element should be added to USE_PYTHON for cython dependencies of versions 1.x or 2.x, and the cython3 element should be added to USE_PYTHON for cython dependencies of versions 3.x - Do not add upper version limits for Python based ports. - Always replace exact version comparison in dependencies with >=. ### Instructions for Haskell based ports - Directories of all Haskell ports have the prefix "hs-". - The latest released version of the software can be determined using the command '../../Tools/scripts/haskell-get-latest-version.sh {haskell project name}' diff --git a/astro/astrometry/Makefile b/astro/astrometry/Makefile index f318d47922b3..ab4cce9b446b 100644 --- a/astro/astrometry/Makefile +++ b/astro/astrometry/Makefile @@ -1,96 +1,96 @@ PORTNAME= astrometry PORTVERSION= 0.97 PORTREVISION= 3 CATEGORIES= astro MASTER_SITES= https://github.com/dstndstn/${PORTNAME}.net/releases/download/${DISTVERSION}/ DISTNAME= ${PORTNAME}.net-${PORTVERSION} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Astronomic calibration service WWW= https://astrometry.net/ LICENSE= GPLv3+ BROKEN_armv6= fails to link: os-features-test.c:10: undefined symbol 'canonicalize_file_name' BROKEN_armv7= fails to link: os-features-test.c:10: undefined symbol 'canonicalize_file_name' BUILD_DEPENDS= bash:shells/bash \ ${PY_SETUPTOOLS} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libcairo.so:graphics/cairo \ libcfitsio.so:astro/cfitsio \ libgsl.so:math/gsl \ libnetpbm.so:graphics/netpbm \ libpng16.so:graphics/png \ libwcs.so:astro/wcslib RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}astropy>0:astro/py-astropy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} #TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} USES= gmake jpeg localbase pkgconfig python shebangfix # solver/test_tweak_plots.py: No module named 'tt' #USE_PYTHON= pytest USE_LDCONFIG= yes SHEBANG_FILES= bin/* configure gsl-an/grab-gsl-sources.sh \ plot/plotann.py sdss/*.py solver/*.py util/[!c]*.py MAKE_ARGS= NETPBM_INC="-I${LOCALBASE}/include/netpbm" \ NETPBM_LIB="-L${LOCALBASE}/lib -lnetpbm" \ SYSTEM_GSL=yes MAKE_ENV= INSTALL_DIR=${STAGEDIR}${PREFIX} \ DATA_INSTALL_DIR=${STAGEDIR}${DATADIR} \ DOC_INSTALL_DIR=${STAGEDIR}${DOCSDIR} \ EXAMPLE_INSTALL_DIR=${STAGEDIR}${EXAMPLESDIR} \ MAN1_INSTALL_DIR=${STAGEDIR}${PREFIX}/share/man/man1 \ PY_BASE_INSTALL_DIR=${STAGEDIR}${PYTHON_LIBDIR}/astrometry \ PYTHON=${PYTHON_CMD} PYTHON_SCRIPT=${PYTHON_CMD} MAKE_JOBS_UNSAFE= yes ALL_TARGET= all py extra cfitsio-utils INSTALL_TARGET= install install-cfitsio-utils #TEST_TARGET= test LDFLAGS+= -lz CONFLICTS_INSTALL= afni p5-Text-RecordParser # bin/imstat bin/tabmerge SUB_FILES= pkg-message OPTIONS_DEFINE= DOCS EXAMPLES OPTIONS_DEFAULT= EXAMPLES # These files are taken from cfitsio and installed by cfitsio 4.5.0+. # fitscopy was slightly modified by astrometry team. CFITSIO_FILES= fitscopy fitsverify imcopy FILES= an-fitstopnm an-pnmtofits astrometry-engine augment-xylist \ build-astrometry-index downsample-fits fit-wcs \ fits-column-merge fitscopy fitsverify fits-flip-endian \ fits-guess-scale fitsgetext get-healpix get-wcs hpsplit \ image2xy imarith imcopy imstat listhead liststruc modhead \ new-wcs pad-file plot-constellations plotquad plotxy \ query-starkd solve-field startree subtable tablist \ tabmerge tabsort wcs-grab wcs-match wcs-pv2sip wcs-rd2xy \ wcs-resample wcs-to-tan wcs-xy2rd wcsinfo post-install: ${CP} -p ${WRKSRC}/solver/fitsverify ${STAGEDIR}${PREFIX}/bin/ .for file in ${FILES} ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${file} .endfor .for file in ${CFITSIO_FILES} ${MV} ${STAGEDIR}${PREFIX}/bin/${file} ${STAGEDIR}${PREFIX}/bin/astrometry-${file} .endfor ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libastrometry.so ${STRIP_CMD} ${STAGEDIR}${PYTHON_LIBDIR}/astrometry/solver/_solver${PYTHON_TAG}.so @${REINPLACE_CMD} -i '' \ -e 's|${STAGEDIR}/usr/local/data|${DATADIR}|' \ ${STAGEDIR}${PREFIX}/etc/${PORTNAME}.cfg @${RMDIR} ${STAGEDIR}${PREFIX}/data @${MKDIR} ${STAGEDIR}${DATADIR}/sdss @${MKDIR} ${STAGEDIR}${DATADIR}/solver @${MKDIR} ${STAGEDIR}${DATADIR}/catalogs ${INSTALL_DATA} ${WRKSRC}/sdss/testdata/*.fit* ${STAGEDIR}${DATADIR}/sdss ${INSTALL_DATA} ${WRKSRC}/solver/index-9918.fits ${STAGEDIR}${DATADIR}/solver ${INSTALL_DATA} ${WRKSRC}/catalogs/*.fit* ${STAGEDIR}${DATADIR}/catalogs .include diff --git a/astro/py-astroML/Makefile b/astro/py-astroML/Makefile index 3ff82b7d19d0..b539c6b7745a 100644 --- a/astro/py-astroML/Makefile +++ b/astro/py-astroML/Makefile @@ -1,27 +1,27 @@ PORTNAME= astroML PORTVERSION= 1.0.2 PORTREVISION= 4 CATEGORIES= astro MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${PORTNAME}-${PORTVERSION}.post1.tar.gz MAINTAINER= wen@FreeBSD.org COMMENT= Tools for machine learning and data mining in Astronomy WWW= https://www.astroml.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.18:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}astropy>=3.0:astro/py-astropy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}.post1 .include diff --git a/astro/py-astropy-healpix/Makefile b/astro/py-astropy-healpix/Makefile index aeb0c8dbc409..a09249f6d3fd 100644 --- a/astro/py-astropy-healpix/Makefile +++ b/astro/py-astropy-healpix/Makefile @@ -1,40 +1,40 @@ PORTNAME= astropy-healpix PORTVERSION= 1.1.3 PORTREVISION= 1 CATEGORIES= astro python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= HEALPix algorithm for Astropy WWW= https://astropy-healpix.readthedocs.io/en/latest/ \ https://github.com/astropy/astropy-healpix LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}extension-helpers>0:astro/py-extension-helpers@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}astropy>=5:astro/py-astropy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-astropy>0:astro/py-pytest-astropy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/astropy_healpix/tests post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME:S/-/_/}/_core.*.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME:S/-/_/}/compiler_version.*.so # tests fail to run, see https://github.com/astropy/astropy-healpix/issues/272 .include diff --git a/astro/py-astropy-helpers/Makefile b/astro/py-astropy-helpers/Makefile index f309096134f0..29cdb6900064 100644 --- a/astro/py-astropy-helpers/Makefile +++ b/astro/py-astropy-helpers/Makefile @@ -1,23 +1,23 @@ PORTNAME= astropy-helpers DISTVERSION= 4.0.1 PORTREVISION= 3 CATEGORIES= astro MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Utilities for building and installing packages in Astropy ecosystem WWW= https://github.com/astropy/astropy-helpers LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/astro/py-astropy/Makefile b/astro/py-astropy/Makefile index 134e12fe386f..f0bfc0a3b867 100644 --- a/astro/py-astropy/Makefile +++ b/astro/py-astropy/Makefile @@ -1,27 +1,27 @@ PORTNAME= astropy DISTVERSION= 7.1.1 PORTREVISION= 1 PORTEPOCH= 2 CATEGORIES= astro MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Community-developed python astronomy tools WWW= https://www.astropy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}extension-helpers>=0:astro/py-extension-helpers@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyerfa>=0:astro/py-pyerfa@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}astropy-iers-data>=0:astro/py-astropy-iers-data@${PY_FLAVOR} USES= compiler:c11 python USE_PYTHON= autoplist cython distutils CONFLICTS_INSTALL= p5-Data-ShowTable # bin/showtable .include diff --git a/astro/py-jplephem/Makefile b/astro/py-jplephem/Makefile index 1aab97b5af04..cdb986532a97 100644 --- a/astro/py-jplephem/Makefile +++ b/astro/py-jplephem/Makefile @@ -1,25 +1,25 @@ PORTNAME= jplephem PORTVERSION= 2.24 PORTREVISION= 1 CATEGORIES= astro python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Python version of NASA DE4xx ephemerides WWW= https://github.com/brandon-rhodes/python-jplephem LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} #USE_GITHUB= yes #GH_ACCOUNT= brandon-rhodes #GH_PROJECT= python-jplephem USES= python USE_PYTHON= distutils NO_ARCH= yes .include diff --git a/astro/py-pykep/Makefile b/astro/py-pykep/Makefile index 95ac38f263f4..f7b2a56cebe7 100644 --- a/astro/py-pykep/Makefile +++ b/astro/py-pykep/Makefile @@ -1,32 +1,32 @@ PORTNAME= pykep DISTVERSIONPREFIX= v DISTVERSION= 2.6.2 PORTREVISION= 8 CATEGORIES= astro python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for pykep, library for astrodynamics research WWW= https://github.com/esa/pykep LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libboost_serialization.so:devel/boost-libs \ libkeplerian_toolbox.so:astro/pykep \ ${PY_BOOST} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygmo2>0:science/py-pygmo2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= cmake compiler:c++11-lang python USE_PYTHON= flavors CMAKE_OFF= PYKEP_BUILD_KEP_TOOLBOX PYKEP_BUILD_TESTS CMAKE_ON= PYKEP_BUILD_PYKEP USE_GITHUB= yes GH_ACCOUNT= esa .include diff --git a/astro/py-pysofa/Makefile b/astro/py-pysofa/Makefile index 663a9c60ff54..bfb172a15a4d 100644 --- a/astro/py-pysofa/Makefile +++ b/astro/py-pysofa/Makefile @@ -1,26 +1,26 @@ PORTNAME= pysofa DISTVERSION= 0.1.1 PORTREVISION= 5 CATEGORIES= astro devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for SOFA, the fundamental astronomy library WWW= https://code.google.com/archive/p/pysofa/ LICENSE= PD LICENSE_FILE= ${WRKSRC}/COPYING RUN_DEPENDS= ${LOCALBASE}/lib/libsofa_c.so:astro/sofa \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python NO_ARCH= yes USE_PYTHON= distutils autoplist post-patch: @${REINPLACE_CMD} -e "s|find_library('sofa_c')|\"${LOCALBASE}/lib/libsofa_c.so\"|" \ ${WRKSRC}/pysofa/pysofa_ctypes.py .include diff --git a/astro/py-pysolar/Makefile b/astro/py-pysolar/Makefile index e7d7dc01165d..ff5083c63b1a 100644 --- a/astro/py-pysolar/Makefile +++ b/astro/py-pysolar/Makefile @@ -1,25 +1,25 @@ PORTNAME= pysolar DISTVERSION= 0.13 PORTREVISION= 1 CATEGORIES= astro science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simulate solar irradiation at any point on Earth WWW= https://pysolar.org/ \ https://github.com/pingswept/pysolar LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes # tests as of 0.13: 84 passed, 343 warnings, 1 error in 14.47s .include diff --git a/astro/py-skyfield/Makefile b/astro/py-skyfield/Makefile index a21f18a12e09..4a69d2b791bf 100644 --- a/astro/py-skyfield/Makefile +++ b/astro/py-skyfield/Makefile @@ -1,46 +1,46 @@ PORTNAME= skyfield PORTVERSION= 1.54 PORTREVISION= 1 CATEGORIES= astro python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Elegant astronomy for Python WWW= https://rhodesmill.org/skyfield/ LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sgp4>0:astro/py-sgp4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jplephem>0:astro/py-jplephem@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sgp4>0:astro/py-sgp4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}astropy>0:astro/py-astropy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}jplephem>0:astro/py-jplephem@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}pyflakes>0:devel/py-pyflakes@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}spktype21>0:astro/py-spktype21@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}termcolor>0:devel/py-termcolor@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:www/py-beautifulsoup@${PY_FLAVOR} USES= python USE_PYTHON= distutils NO_ARCH= yes do-test: install ${CP} ${FILESDIR}/test-skyfield.py ${WRKSRC} (cd ${WRKSRC} && ${PYTHON_CMD} test-skyfield.py) .include diff --git a/astro/py-spktype01/Makefile b/astro/py-spktype01/Makefile index b3ab87a08aa4..2918fa9b7fdf 100644 --- a/astro/py-spktype01/Makefile +++ b/astro/py-spktype01/Makefile @@ -1,32 +1,32 @@ PORTNAME= spktype01 PORTVERSION= 1.0.0 PORTREVISION= 4 CATEGORIES= astro python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Supporting module for jplephem to handle data type 1 WWW= https://github.com/whiskie14142/spktype01 LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jplephem>0:astro/py-jplephem@${PY_FLAVOR} USE_GITHUB= yes GH_ACCOUNT= whiskie14142 GH_TAGNAME= 964cc70 USES= python USE_PYTHON= distutils WRKSRC_SUBDIR= package/${PORTNAME} TEST_WRKSRC= ${WRKSRC}/../../test NO_ARCH= yes PLIST_FILES= ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/__pycache__/spktype01.cpython-${PYTHON_SUFFIX}.opt-1.pyc \ ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/__pycache__/spktype01.cpython-${PYTHON_SUFFIX}.pyc \ ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/spktype01.py .include diff --git a/astro/py-spktype21/Makefile b/astro/py-spktype21/Makefile index ec6d957bf533..70b84e7ebf32 100644 --- a/astro/py-spktype21/Makefile +++ b/astro/py-spktype21/Makefile @@ -1,34 +1,34 @@ PORTNAME= spktype21 PORTVERSION= 0.1.0 PORTREVISION= 4 CATEGORIES= astro python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Supporting module for jplephem to handle data type 21 WWW= https://github.com/whiskie14142/spktype21 LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jplephem>0:astro/py-jplephem@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}spktype01>0:astro/py-spktype01@${PY_FLAVOR} \ py.test:devel/py-pytest@${PY_FLAVOR} USE_GITHUB= yes GH_ACCOUNT= whiskie14142 GH_TAGNAME= 7ed2236 USES= python USE_PYTHON= distutils WRKSRC_SUBDIR= package/${PORTNAME} TEST_WRKSRC= ${WRKSRC}/../../test NO_ARCH= yes PLIST_FILES= ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/__pycache__/spktype21.cpython-${PYTHON_SUFFIX}.opt-1.pyc \ ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/__pycache__/spktype21.cpython-${PYTHON_SUFFIX}.pyc \ ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;}/spktype21.py .include diff --git a/astro/py-sunpy/Makefile b/astro/py-sunpy/Makefile index cf092e1f4f3b..f74afd8df38d 100644 --- a/astro/py-sunpy/Makefile +++ b/astro/py-sunpy/Makefile @@ -1,33 +1,33 @@ PORTNAME= sunpy DISTVERSION= 7.0.2 PORTREVISION= 1 CATEGORIES= astro MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Python for Solar Physics WWW= https://www.sunpy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}astropy>=0:astro/py-astropy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}extension-helpers>=0:astro/py-extension-helpers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}astropy>=0:astro/py-astropy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}aiohttp>=0:www/py-aiohttp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parfive>=0:ftp/py-parfive@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy14>=0:databases/py-sqlalchemy14@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.32.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>=2023.6.0:filesystems/py-fsspec@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils .include diff --git a/audio/moodbar/Makefile b/audio/moodbar/Makefile index 9729ae95c1a7..2000bf0e49bf 100644 --- a/audio/moodbar/Makefile +++ b/audio/moodbar/Makefile @@ -1,25 +1,25 @@ PORTNAME= moodbar PORTVERSION= 1.3.0 CATEGORIES= audio MASTER_SITES= https://github.com/exaile/${PORTNAME}/releases/download/v${PORTVERSION}/ MAINTAINER= jhale@FreeBSD.org COMMENT= Generates mood files from audio files WWW= https://github.com/exaile/moodbar LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libfftw3.so:math/fftw3 -TEST_DEPENDS= ${PYNUMPY} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++17-lang gnome gstreamer meson pkgconfig python:test \ shebangfix tar:xz USE_GNOME= glib20 USE_GSTREAMER= good ogg vorbis SHEBANG_FILES= test.py PLIST_FILES= bin/moodbar .include diff --git a/audio/py-SoundFile/Makefile b/audio/py-SoundFile/Makefile index b5a2858d061f..13f6bb67e371 100644 --- a/audio/py-SoundFile/Makefile +++ b/audio/py-SoundFile/Makefile @@ -1,26 +1,26 @@ PORTNAME= SoundFile DISTVERSION= 0.13.1 PORTREVISION= 1 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Audio library based on libsndfile, CFFI and NumPy WWW= https://github.com/bastibe/PySoundFile LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.0:devel/py-cffi@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.0:devel/py-cffi@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PREFIX}/lib/libsndfile.so:audio/libsndfile USES= python USE_PYTHON= distutils autoplist pytest # pkg-plist has files that are missing in autoplist NO_ARCH= yes .include diff --git a/audio/py-aubio/Makefile b/audio/py-aubio/Makefile index aec61f68b124..8f5d2f9d9f13 100644 --- a/audio/py-aubio/Makefile +++ b/audio/py-aubio/Makefile @@ -1,26 +1,26 @@ PORTREVISION= 4 CATEGORIES= audio python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jhale@FreeBSD.org COMMENT= Python bindings for aubio music analysis LIB_DEPENDS= libaubio.so:audio/aubio -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= sox:audio/sox USES+= python USE_PYTHON= autoplist concurrent distutils pytest MASTERDIR= ${.CURDIR}/../../audio/aubio SLAVEPORT= py PLIST= ${.CURDIR}/pkg-plist pre-test: @(cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} create_test_sounds) post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/_aubio*.so .include "${MASTERDIR}/Makefile" diff --git a/audio/py-auditok/Makefile b/audio/py-auditok/Makefile index fbd97d5a3306..9aee953ed282 100644 --- a/audio/py-auditok/Makefile +++ b/audio/py-auditok/Makefile @@ -1,28 +1,28 @@ PORTNAME= auditok DISTVERSION= 0.3.0 PORTREVISION= 3 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Audio/acoustic activity detection and audio segmentation tool WWW= https://github.com/amsehili/auditok/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyaudio>0:audio/py-pyaudio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydub>0:audio/py-pydub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist pytest NOARCH= yes # tests as of auditok: 7 failed, 608 passed, 218 warnings in 23.05s (failures likely to numpy-1.x while numpy-2.x would possibly work) .include diff --git a/audio/py-essentia/Makefile b/audio/py-essentia/Makefile index 3208f040a44c..889cfaaa3288 100644 --- a/audio/py-essentia/Makefile +++ b/audio/py-essentia/Makefile @@ -1,50 +1,50 @@ PORTNAME= essentia DISTVERSIONPREFIX= v DISTVERSION= 2.1_beta5-1417 PORTREVISION= 1 DISTVERSIONSUFFIX= -gf0f6c358 CATEGORIES= audio PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python bindings for essentia, C++ library for audio and music analysis WWW= https://essentia.upf.edu/ \ https://github.com/MTG/essentia LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/COPYING.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} LIB_DEPENDS= libessentia.so:audio/essentia -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR} MASTER_SITES= https://raw.githubusercontent.com/MTG/essentia/d02b6c752046802a711530e2bcd5feafca42247d/ DISTFILES= waf EXTRACT_ONLY= ${GH_ACCOUNT}-${PORTNAME}*.gz USES= eigen:3 pkgconfig python USE_PYTHON= pytest USE_GITHUB= yes GH_ACCOUNT= MTG post-extract: @${CP} ${DISTDIR}/waf ${WRKSRC}/ do-configure: @cd ${BUILD_WRKSRC} && ${SETENV} ${BUILD_ENV} ${PYTHON_CMD} waf configure --only-python do-build: @cd ${BUILD_WRKSRC} && ${SETENV} ${BUILD_ENV} ${PYTHON_CMD} waf build --only-python do-install: # install cd ${BUILD_WRKSRC} && ${SETENV} ${BUILD_ENV} ${PYTHON_CMD} waf install --only-python --prefix ${PREFIX} --destdir ${STAGEDIR} # strip ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/essentia/_essentia${PYTHON_TAG}.so .include diff --git a/audio/py-librosa/Makefile b/audio/py-librosa/Makefile index 87c753fbd61a..a8733aaa24da 100644 --- a/audio/py-librosa/Makefile +++ b/audio/py-librosa/Makefile @@ -1,55 +1,55 @@ PORTNAME= librosa DISTVERSION= 0.11.0 PORTREVISION= 2 CATEGORIES= audio python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for audio and music processing WWW= https://librosa.org/ \ https://github.com/librosa/librosa LICENSE= ISCL LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}audioread>=2.1.9:audio/py-audioread@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>=4.3.0:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=1.0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.1:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}msgpack>=1.0:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.51.0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pooch>=1.1:devel/py-pooch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.1.0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.6.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SoundFile>=0.12.1:audio/py-SoundFile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}soxr>=0.3.2:audio/py-soxr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.1.1:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mpl>0:devel/py-pytest-mpl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}resampy>=0.2.2:audio/py-resampy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}samplerate>0:audio/py-samplerate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}types-decorator>0:devel/py-types-decorator@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_TUPLE= librosa:librosa-test-data:72bd79e:test_data/tests/data TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ DISPLAY=${DISPLAY} \ XAUTHORITY=${XAUTHORITY} NO_ARCH= yes # tests as of 0.11.0: 48 failed, 13971 passed, 2 skipped, 523 xfailed, 388 warnings in 1196.60s (0:19:56), see https://github.com/librosa/librosa/issues/1978 .include diff --git a/audio/py-music21/Makefile b/audio/py-music21/Makefile index 431562138c7f..7398438cce3e 100644 --- a/audio/py-music21/Makefile +++ b/audio/py-music21/Makefile @@ -1,44 +1,44 @@ PORTNAME= music21 DISTVERSION= 9.7.1 PORTREVISION= 1 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Toolkit for computer-aided musical analysis WWW= https://web.mit.edu/music21/ \ https://github.com/cuthbertLab/music21 LICENSE= BSD3CLAUSE LGPL3 LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}chardet>0:textproc/py-chardet@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonpickle>0:devel/py-jsonpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}more-itertools>0:devel/py-more-itertools@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}webcolors>=1.5:graphics/py-webcolors@${PY_FLAVOR} \ lilypond:print/lilypond \ mscore:audio/musescore \ xdg-open:devel/xdg-utils USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes post-patch: @${REINPLACE_CMD} -e " \ s|/usr/bin/lilypond|${LOCALBASE}/bin/lilypond|; \ s|/usr/bin/mscore3|${LOCALBASE}/bin/mscore|; \ s|/usr/bin/xdg-open|${LOCALBASE}/bin/xdg-open|" \ ${WRKSRC}/music21/environment.py # tests as of 9.7.1: 542 passed, 4 warnings in 79.82s (0:01:19) .include diff --git a/audio/py-pysndfile/Makefile b/audio/py-pysndfile/Makefile index dad4372dc93c..d36158691783 100644 --- a/audio/py-pysndfile/Makefile +++ b/audio/py-pysndfile/Makefile @@ -1,27 +1,27 @@ PORTNAME= pysndfile DISTVERSION= 1.4.7 PORTREVISION= 2 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Cython wrapper class for reading/writing soundfiles using libsndfile WWW= https://forge-2.ircam.fr/roebel/pysndfile LICENSE= LGPL3 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} LIB_DEPENDS= libsndfile.so:audio/libsndfile -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python localbase USE_PYTHON= distutils autoplist cython pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests # tests fail: ModuleNotFoundError: No module named 'pysndfile_inst_dir'; reported to the author via-e-mail on 2024-12-15 .include diff --git a/audio/py-resampy/Makefile b/audio/py-resampy/Makefile index e9f432305c3e..3dfe00405714 100644 --- a/audio/py-resampy/Makefile +++ b/audio/py-resampy/Makefile @@ -1,23 +1,23 @@ PORTNAME= resampy DISTVERSION= 0.4.3 PORTREVISION= 2 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Efficient signal resampling conversion in Python WWW= https://github.com/bmcfee/resampy LICENSE= ISCL LICENSE_FILE= ${WRKSRC}/LICENSE.md RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>=0.53:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/audio/py-samplerate/Makefile b/audio/py-samplerate/Makefile index 243a70273752..344d282664c4 100644 --- a/audio/py-samplerate/Makefile +++ b/audio/py-samplerate/Makefile @@ -1,34 +1,34 @@ PORTNAME= samplerate DISTVERSION= 0.2.1 PORTREVISION= 1 CATEGORIES= audio MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python wrapper for libsamplerate based on pybind11 and NumPy WWW= https://github.com/tuxu/python-samplerate LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.rst BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=6.2:devel/py-setuptools-scm@${PY_FLAVOR} \ pybind11>0:devel/pybind11 \ cmake:devel/cmake-core LIB_DEPENDS= libsamplerate.so:audio/libsamplerate -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake compiler:c++14-lang pkgconfig python USE_PYTHON= flavors pytest TEST_WRKSRC= ${WRKSRC}/tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} PLIST_FILES= ${PYTHON_SITELIBDIR}/samplerate${PYTHON_TAG}.so do-install: ${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} ${INSTALL_LIB} ${BUILD_WRKSRC}/samplerate${PYTHON_TAG}.so ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/audio/py-sounddevice/Makefile b/audio/py-sounddevice/Makefile index 7bde463c8a88..db3a16630021 100644 --- a/audio/py-sounddevice/Makefile +++ b/audio/py-sounddevice/Makefile @@ -1,30 +1,30 @@ PORTNAME= sounddevice DISTVERSION= 0.5.1 PORTREVISION= 2 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Play and record sound through OSS in python programs WWW= https://github.com/spatialaudio/python-sounddevice LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.0.0:devel/py-cffi@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.0.0:devel/py-cffi@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ portaudio>0:audio/portaudio USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes post-install: # workaround for https://github.com/spatialaudio/python-sounddevice/issues/116 @${GREP} "/sounddevice\." < ${_PYTHONPKGLIST} \ | ${SED} -e 's|/sounddevice\.|/_sounddevice.|' \ >> ${_PYTHONPKGLIST} .include diff --git a/audio/py-soxr/Makefile b/audio/py-soxr/Makefile index 81262f80a15b..0aad3ed11f85 100644 --- a/audio/py-soxr/Makefile +++ b/audio/py-soxr/Makefile @@ -1,36 +1,36 @@ PORTNAME= soxr DISTVERSION= 0.5.0 PORTREVISION= 1 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High quality, one-dimensional sample-rate conversion library WWW= https://github.com/dofuuz/python-soxr LICENSE= LGPL21 BSD3CLAUSE LICENSE_COMB= multi BROKEN_i386= fails to compile: ...requires target feature 'sse', but would be inlined into function 'h8' that is compiled without support for 'sse' BUILD_DEPENDS= ${PY_SETUPTOOLS} \ cmake:devel/cmake-core \ ${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.9.0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} xpost-install: # strip binary @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/soxr/cysoxr${PYTHON_TAG}.so # correct version as a workaround for https://github.com/dofuuz/python-soxr/issues/21 @${REINPLACE_CMD} -i '' -e 's|^version |__version__ |' ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/soxr/_version.py .include diff --git a/audio/py-wavio/Makefile b/audio/py-wavio/Makefile index 938dfc9d5aa3..08251ee41e98 100644 --- a/audio/py-wavio/Makefile +++ b/audio/py-wavio/Makefile @@ -1,21 +1,21 @@ PORTNAME= wavio DISTVERSION= 0.0.9 PORTREVISION= 2 CATEGORIES= audio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading and writing WAV files using numpy arrays WWW= https://github.com/WarrenWeckesser/wavio/ LICENSE= BSD2CLAUSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes .include diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile index 92d44ed83a8e..0d64d547a841 100644 --- a/biology/groopm/Makefile +++ b/biology/groopm/Makefile @@ -1,24 +1,24 @@ PORTNAME= GroopM DISTVERSION= 0.3.4 PORTREVISION= 7 CATEGORIES= biology python MASTER_SITES= PYPI MAINTAINER= yuri@FreeBSD.org COMMENT= Metagenomic binning suite WWW= https://ecogenomics.github.io/GroopM/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.10.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tables>=2.3:devel/py-tables@${PY_FLAVOR} USES= python USE_PYTHON= distutils noflavors autoplist NO_ARCH= yes .include diff --git a/biology/prodigy-lig/Makefile b/biology/prodigy-lig/Makefile index 37913457187b..866f357313fb 100644 --- a/biology/prodigy-lig/Makefile +++ b/biology/prodigy-lig/Makefile @@ -1,30 +1,30 @@ PORTNAME= prodigy-lig DISTVERSIONPREFIX= v DISTVERSION= 1.1.3 PORTREVISION= 1 CATEGORIES= biology python MAINTAINER= yuri@FreeBSD.org COMMENT= Prediction of protein-small molecule binding affinities WWW= https://nestor.science.uu.nl/prodigy/lig LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}poetry-core>0:devel/py-poetry-core@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= gmake python USE_PYTHON= pep517 noflavors autoplist pytest USE_GITHUB= yes GH_ACCOUNT= haddocking NO_ARCH= yes .include diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index ee1350ce2310..5e1750a708c9 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,41 +1,41 @@ PORTNAME= pysces DISTVERSION= 1.2.2 PORTREVISION= 2 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Simulator for Cellular Systems WWW= https://pysces.github.io/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PY_EXTRA= ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PY_EXTRA} USES= fortran localbase:ldflags python USE_PYTHON= pep517 autoplist pytest LDFLAGS+= -lpython${PYTHON_VER} BINARY_ALIAS= python3=${PYTHON_CMD} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/pitcon/pitcon.cpython-${PYTHON_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/nleq2/nleq2.cpython-${PYTHON_SUFFIX}.so do-test: # from section 2.1 Loading PySCeS in http://pysces.sourceforge.net/pdf/userguide.pdf @${SETENV} ${TEST_ENV} ${PYTHON_CMD} -c "import pysces; pysces.test();" .include diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile index 1dd753d79aff..c73a91796140 100644 --- a/biology/py-biom-format/Makefile +++ b/biology/py-biom-format/Makefile @@ -1,32 +1,32 @@ PORTNAME= biom-format PORTVERSION= 2.1.16 PORTREVISION= 2 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jrm@FreeBSD.org COMMENT= Biological Observation Matrix (BIOM) Format Project WWW= https://biom-format.org/ LICENSE= BSD3CLAUSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent cython distutils pytest .include post-extract: ${RM} -r ${WRKSRC}/tests post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/biom/*.so .include diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 5c131cfa505b..1c81dea53bd7 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -1,32 +1,32 @@ PORTNAME= biopython DISTVERSION= 1.85 PORTREVISION= 3 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= mauricio@arareko.net COMMENT= Collection of Python modules for bioinformatics WWW= https://biopython.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist OPTIONS_DEFINE= REPORTLAB OPTIONS_DEFAULT= REPORTLAB REPORTLAB_DESC= PDF support in Bio.Graphics module REPORTLAB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*.so .include diff --git a/biology/py-biosig/Makefile b/biology/py-biosig/Makefile index b1eaac088600..79dd6be9e5d1 100644 --- a/biology/py-biosig/Makefile +++ b/biology/py-biosig/Makefile @@ -1,33 +1,33 @@ PORTNAME= biosig DISTVERSION= 2.6.1 PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= SF/${PORTNAME}/BioSig%20for%20C_C%2B%2B/src/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME}-${PORTVERSION}.src MAINTAINER= yuri@FreeBSD.org COMMENT= Library for reading and writing different biosignal data format WWW= https://biosig.sourceforge.net/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/../../COPYING -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libbiosig.so:biology/biosig USES= python tar:xz USE_PYTHON= distutils autoplist WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION} WRKSRC_SUBDIR= biosig4c++/python post-patch: cd ${WRKSRC} && \ ${SED} -e 's|@PACKAGE_VERSION@|${DISTVERSION}|' < setup.py.in > setup.py && \ ${TOUCH} README.md post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/biosig${PYTHON_TAG}.so .include diff --git a/biology/py-bx-python/Makefile b/biology/py-bx-python/Makefile index 3884f6998dfb..329032d640ef 100644 --- a/biology/py-bx-python/Makefile +++ b/biology/py-bx-python/Makefile @@ -1,33 +1,33 @@ PORTNAME= bx-python DISTVERSION= 0.14.0 PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading, manipulating and writing genomic data sets WWW= https://github.com/bxlab/bx-python LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} USES= compiler python USE_PYTHON= autoplist cython pep517 post-patch: # force cythonization, compilation fails otherwise for some reason @${TOUCH} `${FIND} ${WRKSRC} -name "*.pyx" -o -name "*.pxd"` post-install: @${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/bx -name "*.so" | ${XARGS} ${STRIP_CMD} .include diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile index dc03e09d2bcf..e83d82db1e00 100644 --- a/biology/py-deeptools/Makefile +++ b/biology/py-deeptools/Makefile @@ -1,28 +1,28 @@ PORTNAME= deepTools DISTVERSION= 3.5.2 PORTREVISION= 3 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= User-friendly tools for exploring deep-sequencing data WWW= https://github.com/deeptools/deepTools LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.17.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pysam>=0.14.0:biology/py-pysam@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}py2bit>=0.3.0:biology/py-py2bit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpydoc>=0.5:textproc/py-numpydoc@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyBigWig>=0.3.18:biology/py-pybigwig@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.9:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}deeptoolsintervals>=0.1.8:biology/py-deeptoolsintervals@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent distutils .include diff --git a/biology/py-ete3/Makefile b/biology/py-ete3/Makefile index f6d9518113bb..528ce2f79082 100644 --- a/biology/py-ete3/Makefile +++ b/biology/py-ete3/Makefile @@ -1,29 +1,29 @@ PORTNAME= ete3 DISTVERSION= 3.1.3 PORTREVISION= 4 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Framework for the analysis and visualization of trees WWW= http://etetoolkit.org/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python pyqt:5 shebangfix USE_PYTHON= distutils concurrent autoplist pytest # some tests fail, see https://github.com/etetoolkit/ete/issues/643 USE_PYQT= pyqt5 SHEBANG_GLOB= *.py NO_ARCH= yes .include diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile index 6c8869a0b03d..904793dab0e8 100644 --- a/biology/py-goatools/Makefile +++ b/biology/py-goatools/Makefile @@ -1,31 +1,31 @@ PORTNAME= goatools DISTVERSION= 1.1.6 PORTREVISION= 3 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Tools for processing and visualizing Gene Ontology terms WWW= https://github.com/tanghaibao/goatools/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE # xlrd should be == 1.2.0 RUN_DEPENDS= ${PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}XlsxWriter>0:textproc/py-xlsxwriter@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}docopt>0:devel/py-docopt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygraphviz>0:graphics/py-pygraphviz@${PY_FLAVOR} \ wget>0:ftp/wget USES= python USE_PYTHON= autoplist distutils .include diff --git a/biology/py-htseq/Makefile b/biology/py-htseq/Makefile index 8fc5135ba2e7..d057c5e18783 100644 --- a/biology/py-htseq/Makefile +++ b/biology/py-htseq/Makefile @@ -1,31 +1,31 @@ PORTNAME= HTSeq DISTVERSION= 2.1.2 PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= alven@FreeBSD.org COMMENT= Python library to facilitate programmatic analysis of sequence data WWW= https://github.com/htseq/htseq/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} RUN_DEPENDS= ${PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.1.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>1.5.0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython distutils pytest post-stage: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*.so .include diff --git a/biology/py-loompy/Makefile b/biology/py-loompy/Makefile index 87ac799814dc..b059cd0a64e4 100644 --- a/biology/py-loompy/Makefile +++ b/biology/py-loompy/Makefile @@ -1,28 +1,28 @@ PORTNAME= loompy DISTVERSION= 3.0.7 PORTREVISION= 3 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Work with .loom files for single-cell RNA-seq data WWW= https://loompy.org/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpy-groupies>0:math/py-numpy-groupies@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile index 4d905909aa13..3114c6dd2fd0 100644 --- a/biology/py-macs2/Makefile +++ b/biology/py-macs2/Makefile @@ -1,37 +1,37 @@ PORTNAME= macs2 DISTVERSIONPREFIX= v DISTVERSION= 2.2.9.1 PORTREVISION= 2 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Identify transcription factor binding sites WWW= https://github.com/taoliu/MACS LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cykhash>0:devel/py-cykhash@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ bash:shells/bash USES= python shebangfix USE_GITHUB= yes USE_PYTHON= autoplist concurrent cython0 distutils GH_ACCOUNT= taoliu GH_PROJECT= MACS SHEBANG_FILES= test/cmdlinetest_update test/cmdlinetest test/prockreport post-stage: ${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so do-test: install @cd ${WRKSRC}/test && ./cmdlinetest tag .include diff --git a/biology/py-macs3/Makefile b/biology/py-macs3/Makefile index 697cda306f9b..99cc072bf654 100644 --- a/biology/py-macs3/Makefile +++ b/biology/py-macs3/Makefile @@ -1,49 +1,49 @@ PORTNAME= MACS3 DISTVERSIONPREFIX= v DISTVERSION= 3.0.4 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Peak caller aimed at transcription factor binding sites WWW= https://github.com/taoliu/MACS LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE NOT_FOR_ARCHS= i386 NOT_FOR_ARCHS_REASON_i386=Requires _Float16 -COMMON_DEPENDS= ${PYNUMPY} \ +COMMON_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>1.11.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cykhash>=2.0,<3.0:devel/py-cykhash@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.3:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hmmlearn>=0.3.2:math/py-hmmlearn@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ simde>0:devel/simde \ ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython \ ${COMMON_DEPENDS} RUN_DEPENDS= ${COMMON_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ bash:shells/bash USES= localbase perl5 python shebangfix USE_GITHUB= yes USE_PERL5= test USE_PYTHON= autoplist concurrent distutils GH_ACCOUNT= macs3-project GH_PROJECT= MACS SHEBANG_FILES= test/cmdlinetest* test/prockreport test/*.py test/pyprofile* post-stage: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS3/*/*.so # FIXME: Some tests fail due to a py-threadpoolctl issue # https://github.com/joblib/threadpoolctl/pull/148 do-test: deinstall reinstall @${RM} -rf ${WRKSRC}/temp @cd ${WRKSRC}/test && ./cmdlinetest tag .include diff --git a/biology/py-mrcfile/Makefile b/biology/py-mrcfile/Makefile index 504e9349c3c6..a97aad8ff9b0 100644 --- a/biology/py-mrcfile/Makefile +++ b/biology/py-mrcfile/Makefile @@ -1,22 +1,22 @@ PORTNAME= mrcfile DISTVERSION= 1.5.3 PORTREVISION= 2 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= MRC file I/O library which is used in structural biology WWW= https://github.com/ccpem/mrcfile LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/biology/py-multiqc/Makefile b/biology/py-multiqc/Makefile index d17816870f94..2bbf2609bd76 100644 --- a/biology/py-multiqc/Makefile +++ b/biology/py-multiqc/Makefile @@ -1,47 +1,47 @@ PORTNAME= multiqc DISTVERSION= 1.25.2 PORTREVISION= 4 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Aggregate bioinformatics analysis reports across samples and tools WWW= https://github.com/MultiQC/MultiQC LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE # Use either py-kaleido (not in ports yet) or py-orca + py-psutil -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}humanize>0:devel/py-humanize@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>0:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orca>0:devel/py-orca@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.7.0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typeguard>0:devel/py-typeguard@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.0.0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich-click>0:devel/py-rich-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}coloredlogs>0:devel/py-coloredlogs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=5.18:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}markdown>0:textproc/py-markdown@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>=10:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=4:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spectra>=0.0.10:graphics/py-spectra@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=10:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>0:devel/py-natsort@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= autoplist concurrent distutils SHEBANG_FILES= multiqc/utils/config.py NO_ARCH= yes post-patch: @${RM} ${WRKSRC}/multiqc/utils/config.py.orig .include diff --git a/biology/py-ont-fast5-api/Makefile b/biology/py-ont-fast5-api/Makefile index 284b6dc8b28e..d667f0e94b64 100644 --- a/biology/py-ont-fast5-api/Makefile +++ b/biology/py-ont-fast5-api/Makefile @@ -1,44 +1,44 @@ PORTNAME= ont-fast5-api DISTVERSIONPREFIX= release_ DISTVERSION= 4.0.2 PORTREVISION= 3 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Interface to HDF5 files in Oxford Nanopore .fast5 format WWW= https://github.com/nanoporetech/ont_fast5_api/ LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libvbz_hdf_plugin.so:archivers/vbz-compression -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}progressbar>0:misc/py-progressbar@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>=0:devel/py-pip@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent distutils USE_GITHUB= yes GH_ACCOUNT= nanoporetech GH_PROJECT= ont_fast5_api NO_ARCH= yes NO_BUILD= yes post-patch: ${RM} ${WRKSRC}/ont_fast5_api/vbz_plugin/* pre-configure: @${REINPLACE_CMD} -e 's|progressbar33|progressbar|g' \ ${WRKSRC}/setup.py \ ${WRKSRC}/README.rst \ ${WRKSRC}/ont_fast5_api/conversion_tools/conversion_utils.py do-test: @cd ${WRKSRC} && ${PYTHON_CMD} ${PYDISTUTILS_SETUP} test .include diff --git a/biology/py-pydeseq2/Makefile b/biology/py-pydeseq2/Makefile index 25285f85cd4f..ec4fc77c30a2 100644 --- a/biology/py-pydeseq2/Makefile +++ b/biology/py-pydeseq2/Makefile @@ -1,27 +1,27 @@ PORTNAME= pydeseq2 DISTVERSION= 0.5.2 PORTREVISION= 2 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Python implementation of the popular DESeq2 R package WWW= https://github.com/owkin/PyDESeq2 LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}anndata>=0.8.0:devel/py-anndata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}formulaic>=1.0.2:math/py-formulaic@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}formulaic_contrasts>=0.2.0:math/py-formulaic-contrasts@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.6.2:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.4.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.1.0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>1.11.0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils .include diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index 9a7245b2ad97..c3de41cee3a3 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,62 +1,62 @@ PORTNAME= scikit-bio DISTVERSION= 0.6.3 PORTREVISION= 2 CATEGORIES= biology education python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Data structures, algorithms, educational resources for bioinformatics WWW= http://scikit-bio.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_aarch64= fails to build: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size, see https://github.com/biocore/scikit-bio/issues/1816 .if !exists(/usr/include/omp.h) BROKEN= requires OpenMP support that is missing on this architecture .endif -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=3.6.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hdmedians>=0.14.1:math/py-hdmedians@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.20.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.9.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0:math/py-statsmodels@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py .include .if ${ARCH} == i386 CFLAGS+= -msse2 # workaround for https://github.com/biocore/scikit-bio/issues/1727 CXXFLAGS+= -msse2 .endif post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_TAG}.so do-test: # tests fail to run in a regular way, see https://github.com/biocore/scikit-bio/issues/1846 @cd ${STAGEDIR}${PYTHON_SITELIBDIR} && \ ${SETENV} ${TEST_ENV} pytest . # tests as of 0.6.3: 2792 passed, 30 skipped, 56 warnings in 250.28s (0:04:10) .include diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile index 6c190c2737b0..7d0dfb3d302d 100644 --- a/biology/pyfasta/Makefile +++ b/biology/pyfasta/Makefile @@ -1,20 +1,20 @@ PORTNAME= pyfasta PORTVERSION= 0.5.2 PORTREVISION= 6 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Fast, memory-efficient, pythonic access to fasta sequence files WWW= https://bitbucket.org/brentp/biostuff/src/ LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS:= ${BUILD_DEPENDS} USES= python USE_PYTHON= distutils autoplist .include diff --git a/cad/py-gdstk/Makefile b/cad/py-gdstk/Makefile index 7d1faf89f4a5..884315df6162 100644 --- a/cad/py-gdstk/Makefile +++ b/cad/py-gdstk/Makefile @@ -1,38 +1,38 @@ PORTNAME= gdstk DISTVERSIONPREFIX= v DISTVERSION= 1.0.0 PORTREVISION= 1 CATEGORIES= cad #MASTER_SITES= PYPI # some test files are missing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for creation and manipulation of GDSII and OASIS files WWW= https://heitzmann.github.io/gdstk/ \ https://github.com/heitzmann/gdstk/ LICENSE= BSL LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ cmake:devel/cmake-core LIB_DEPENDS= libqhull_r.so:math/qhull -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++17-lang python USE_PYTHON= autoplist pep517 pytest USE_GITHUB= yes GH_ACCOUNT= heitzmann TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests # tests as of 0.9.60: 87 passed in 2.37s .include diff --git a/cad/py-pyfda/Makefile b/cad/py-pyfda/Makefile index cf94b364dc4d..ca53e86b42db 100644 --- a/cad/py-pyfda/Makefile +++ b/cad/py-pyfda/Makefile @@ -1,47 +1,47 @@ PORTNAME= pyfda PORTVERSION= 0.1 PORTREVISION= 16 DISTVERSIONSUFFIX= rc6 CATEGORIES= cad python devel MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= GUI tool for designing and analysing discrete time filters WWW= https://github.com/chipmuenk/pyFDA LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python pyqt:5 USE_PYTHON= distutils autoplist USE_PYQT= pyqt5:run NO_ARCH= yes post-extract: @${MV} ${WRKSRC}/pyfda/pyfda_log.conf ${WRKSRC}/pyfda/pyfda_log.conf.sample @${MV} ${WRKSRC}/pyfda/pyfda_log_debug.conf ${WRKSRC}/pyfda/pyfda_log_debug.conf.sample post-patch: @${REINPLACE_CMD} -e " \ s|package_data={'pyfda': \['pyfda_log.conf', 'pyfda_log_debug.conf',|package_data={'pyfda': [|; \ s|data_files = \[|data_files = [('${PREFIX}/etc', ['pyfda/pyfda_log.conf.sample', 'pyfda/pyfda_log_debug.conf.sample'])|" \ ${WRKSRC}/setup.py @${REINPLACE_CMD} -e " \ s|logging.config.fileConfig(os.path.join(base_dir, rc.log_config_file))|logging.config.fileConfig(os.path.join('${PREFIX}/etc', rc.log_config_file))|" \ ${WRKSRC}/pyfda/pyfdax.py @${REINPLACE_CMD} -e " \ s|'pyfda.log'|'/tmp/pyfda.log'|" \ ${WRKSRC}/pyfda/*.conf.sample post-stage: @${REINPLACE_CMD} -E " \ s|(.*\.sample)$$|@sample \1|" \ ${WRKDIR}/.PLIST.pymodtmp .include diff --git a/cad/py-pygmsh/Makefile b/cad/py-pygmsh/Makefile index 78743ff241c7..946ca82dddf4 100644 --- a/cad/py-pygmsh/Makefile +++ b/cad/py-pygmsh/Makefile @@ -1,32 +1,32 @@ PORTNAME= pygmsh DISTVERSION= 7.1.17 PORTREVISION= 4 CATEGORIES= cad python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python frontend for Gmsh (on top of Gmsh's own binding) WWW= https://github.com/meshpro/pygmsh LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}gmsh>0:cad/py-gmsh@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meshio>=4.3.2:science/py-meshio@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist pytest # 1 error and many warnings in tests, see https://github.com/meshpro/pygmsh/issues/564 NO_ARCH= yes pre-configure: @( \ ${ECHO} "from setuptools import setup" && \ ${ECHO} "setup()" \ ) > ${WRKSRC}/setup.py .include diff --git a/cad/xyce/Makefile b/cad/xyce/Makefile index 3d1b816c03eb..8c0994241de4 100644 --- a/cad/xyce/Makefile +++ b/cad/xyce/Makefile @@ -1,85 +1,85 @@ PORTNAME= xyce DISTVERSIONPREFIX= Release- DISTVERSION= 7.10.0 PORTREVISION= 1 CATEGORIES= cad MAINTAINER= yuri@FreeBSD.org COMMENT= Xyce electronic simulator WWW= https://xyce.sandia.gov/ \ https://github.com/Xyce/Xyce LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libblas.so:math/blas \ libfftw3.so:math/fftw3 \ liblapack.so:math/lapack \ libtpetra.so:science/trilinos \ \ libamd.so:math/suitesparse-amd \ libcholmod.so:math/suitesparse-cholmod \ libcolamd.so:math/suitesparse-colamd \ libsuitesparseconfig.so:math/suitesparse-config \ libumfpack.so:math/suitesparse-umfpack TEST_DEPENDS= git:devel/git \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${LOCALBASE}/share/certs/ca-root-nss.crt:security/ca_root_nss USES= autoreconf bison gmake fortran libtool localbase perl5 python:test # GNU tools should be used for 7.5 and on until the cmake build is declared stable USE_CXXSTD= c++14 # otherwise configure fails because of c++14 features like std::conditional_t USE_CXXSTD= c++17 # workaround for https://github.com/Xyce/Xyce/issues/97, which occurred when Trilinos was updated to 15.1.0 USE_LDCONFIG= yes USE_PERL5= test USE_GITHUB= yes GH_ACCOUNT= Xyce GH_PROJECT= Xyce GNU_CONFIGURE= yes CONFIGURE_ARGS= LEX=/usr/bin/flex \ --enable-stokhos \ --enable-amesos \ --enable-shared \ --disable-static CFLAGS+= -I${LOCALBASE}/include/kokkos # https://github.com/Xyce/Xyce/issues/137 CXXFLAGS+= -I${LOCALBASE}/include/kokkos # https://github.com/Xyce/Xyce/issues/137 INSTALL_TARGET= install-strip BINARY_ALIAS= python=${PYTHON_CMD} # only for tests do-test: # one test is known to fail, see https://github.com/Xyce/Xyce/issues/67#issuecomment-1179857728 # checkout tests @cd ${WRKDIR} && \ ${ECHO} "cloning git repository ..." && \ ${RM} -rf Xyce_Regression && \ git clone -q https://github.com/Xyce/Xyce_Regression.git && \ cd Xyce_Regression && \ git checkout -q Release-${DISTVERSION} # run tests @cd ${TEST_WRKSRC} && ( \ ${ECHO} "running tests ..."; \ eval `${WRKDIR}/Xyce_Regression/TestScripts/suggestXyceTagList.sh ${STAGEDIR}${PREFIX}/bin/Xyce` ; \ ${SETENV} ${TEST_ENV} ${WRKDIR}/Xyce_Regression/TestScripts/run_xyce_regression \ --output=${WRKDIR}/Xyce_Test \ --xyce_test="${WRKDIR}/Xyce_Regression" \ --resultfile=${WRKDIR}/serial_results \ --taglist="$$TAGLIST" \ ${STAGEDIR}${PREFIX}/bin/Xyce \ ) # Testssuite doesn't stop when Ctrl-C is pressed: https://github.com/Xyce/Xyce_Regression/issues/1 # Trilinos build instructions for Xyce: https://xyce.sandia.gov/documentation-tutorials/building-guide/#instTrilinos # Xyce build instructions: https://xyce.sandia.gov/documentation-tutorials/building-guide/ # Xyce regression suite instructions: https://xyce.sandia.gov/documentation-tutorials/running-the-xyce-regression-suite/ # docs are in https://xyce.sandia.gov/files/xyce/Xyce_Docs-7.5.tar.gz # tests as of 7.10.0: # All Test runs complete - Warning 1 Tests FAILED (CommandLine/command_line.........................................TIME LIMIT[sh]) # 0 Tests EXITED WITH ERROR # Total testing time: 159.1m (wall), 8997s (user), 382s (system) .include diff --git a/comms/apitran/Makefile b/comms/apitran/Makefile index 64d222a2303d..85423ea84f27 100644 --- a/comms/apitran/Makefile +++ b/comms/apitran/Makefile @@ -1,40 +1,40 @@ PORTNAME= apitran PORTVERSION= g20180926 PORTREVISION= 10 CATEGORIES= comms astro hamradio python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= hamradio@FreeBSD.org COMMENT= Toolkit to handle the automatic picture transmission protocol WWW= https://github.com/rsj56/apitran LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tkinter>0:x11-toolkits/py-tkinter@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=7.0.0:graphics/py-pillow@${PY_FLAVOR} \ sox:audio/sox USES= magick:6,run python:run shebangfix USE_GITHUB= yes GH_ACCOUNT= rsj56 GH_TAGNAME= d209347 NO_BUILD= yes NO_ARCH= yes SHEBANG_FILES= apitran do-install: ${INSTALL_SCRIPT} ${WRKSRC}/apitran ${STAGEDIR}${PREFIX}/bin ${MKDIR} ${STAGEDIR}${DOCSDIR} .for f in NOAA_APT_Frame_Format.gif README.md ${INSTALL_DATA} ${WRKSRC}/$f ${STAGEDIR}${DOCSDIR} .endfor ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} .for f in ex_1ch_11025.png ex_2ch_48000.png ex_2ch_48000.wav ${INSTALL_DATA} ${WRKSRC}/Examples/$f ${STAGEDIR}${EXAMPLESDIR} .endfor .include diff --git a/comms/cubicsdr/Makefile b/comms/cubicsdr/Makefile index 9c16baf002f3..4453704206e4 100644 --- a/comms/cubicsdr/Makefile +++ b/comms/cubicsdr/Makefile @@ -1,46 +1,46 @@ PORTNAME= cubicsdr PORTVERSION= 0.2.7 PORTREVISION= 5 CATEGORIES= comms hamradio MAINTAINER= hamradio@FreeBSD.org COMMENT= SDR receiver using liquidsdr WWW= https://cubicsdr.readthedocs.io/en/latest/ LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhamlib.so:comms/hamlib \ libliquid.so:comms/liquid-dsp \ libpulse.so:audio/pulseaudio \ libSoapySDR.so:misc/soapysdr RUN_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/dri.pc:graphics/mesa-dri \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:noninja compiler:c++11-lib gl python USE_GL+= egl glu USE_WX= 3.2 OPTIONS_DEFINE= HAMLIB OPTIONS_DEFAULT= HAMLIB HAMLIB_DESC= Support rig control via hamlib # for detailed debugging uncomment the next line #CMAKE_ARGS+= --debug-output --trace .include .if ${PORT_OPTIONS:MHAMLIB} LIB_DEPENDS+= libhamlib.so:comms/hamlib CMAKE_ARGS+= -DUSE_HAMLIB=1 .endif CMAKE_ARGS+= -DwxWidgets_CONFIG_EXECUTABLE=${LOCALBASE}/bin/wxgtk3u-3.2-config USE_GITHUB= yes GH_ACCOUNT= cjcliffe GH_PROJECT= CubicSDR GH_TAGNAME= 0248e5a # # N.B. modem from liquidsp was renamed to modemcf Fri Nov 12, 2021 # our port liquidsp is not synced with Master hence we are stuck here for now. -db .include diff --git a/comms/gnuradio/Makefile b/comms/gnuradio/Makefile index cbb2d5e47113..06ca2b1500a9 100644 --- a/comms/gnuradio/Makefile +++ b/comms/gnuradio/Makefile @@ -1,139 +1,139 @@ PORTNAME= gnuradio DISTVERSIONPREFIX= v DISTVERSION= 3.10.12.0 PORTREVISION= 10 CATEGORIES= comms astro hamradio MAINTAINER= hamradio@FreeBSD.org COMMENT= Amateur Radio Software defined radio WWW= https://www.gnuradio.org/ LICENSE= GPLv3 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyqtgraph>0:graphics/py-pyqtgraph@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx>=1.2.2,1:textproc/py-sphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/click/__init__.py:devel/py-click@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/click_plugins/__init__.py:devel/py-click-plugins@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/gi/__init__.py:devel/py-pygobject@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/mako/__init__.py:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/pygccxml/__init__.py:textproc/py-pygccxml@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/pytest/__init__.py:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_SITELIBDIR}/yaml/__init__.py:devel/py-pyyaml@${PY_FLAVOR} \ ${SCIPY} \ aconnect:audio/alsa-utils \ cheetah:devel/py-cheetah3@${PY_FLAVOR} \ cppzmq>0:net/cppzmq \ minixmlto:textproc/minixmlto \ mpir>0:math/mpir \ pybind11>0:devel/pybind11 \ pygobject-common>0:devel/pygobject-common \ sdl-config:devel/sdl12 \ volk>0:devel/volk \ xdg-open:devel/xdg-utils LIB_DEPENDS= libad9361.so:misc/libad9361-iio \ libasound.so:audio/alsa-lib \ libboost_thread.so:devel/boost-libs \ libcodec2.so:audio/codec2 \ libfftw3f.so:math/fftw3-float \ libfmt.so:devel/libfmt \ libgmpxx.so:math/gmp \ libgsl.so:math/gsl \ libgsm.so:audio/gsm \ libiio.so:misc/libiio \ libjack.so:audio/jack \ libportaudio.so:audio/portaudio \ libsndfile.so:audio/libsndfile \ libSoapySDR.so:misc/soapysdr \ libspdlog.so:devel/spdlog \ libunwind.so:devel/libunwind \ libqwt.so:x11-toolkits/qwt6@qt5 \ libzmq.so:net/libzmq4 RUN_DEPENDS:= ${BUILD_DEPENDS} USES= cmake compiler:c++14-lang desktop-file-utils fortran gnome \ iconv localbase:ldflags perl5 pkgconfig pyqt:5 python \ qt:5 shared-mime-info shebangfix SHEBANG_FILES= gnuradio-runtime/python/gnuradio/ctrlport/gr-ctrlport-monitor \ gnuradio-runtime/python/gnuradio/ctrlport/gr-perf-monitorx \ grc/scripts/freedesktop/grc_setup_freedesktop.in CMAKE_ARGS+= -DCMAKE_INSTALL_RPATH:STRING="${LOCALBASE}/lib/gcc${_GCC_VER}" \ -DENABLE_GR_CTRLPORT="YES" \ -DENABLE_GR_QTGUI="YES" \ -DENABLE_INTERNAL_VOLK:STRING="OFF" \ -DGR_PKG_DOC_DIR:STRING="${DOCSDIR}" \ -DICONV_LIB:STRING="X${ICONV_LIB}" \ -DICONV_PREFIX:STRING="${ICONV_PREFIX}" \ -DLOCALBASE:STRING="${LOCALBASE}" \ -DPYTHON_EXECUTABLE:STRING="${PYTHON_CMD}" \ -DXMLTO_EXECUTABLE:STRING=minixmlto # for detailed debugging uncomment the next line #CMAKE_ARGS+= --debug-output --trace CFLAGS+= -Wno-deprecated CXXFLAGS+= -Wno-deprecated USE_CXXSTD= c++14 USE_GNOME= gtk30 USE_GITHUB= yes USE_PYQT= pyqt5 USE_QT= buildtools core gui qmake widgets USE_LDCONFIG= yes LIBSTRIP_FILES= analog audio blocks channels digital dtv fec fft filter pmt \ qtgui runtime trellis video-sdl vocoder wavelet OPTIONS_DEFINE= DOCS UHD OPTIONS_SUB= yes UHD_DESC= Include UHD support from Ettus PLIST_SUB+= PORTMAINVER=${PORTVERSION:C|^([1-9]+)\.([0-9]+)\.([0-9]+).*|\1.\2.\3|} \ PORTVERSION=${PORTVERSION} DOCS_RUN_DEPEND= freefont-ttf>0:x11-fonts/freefont-ttf DOCS_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sphinx>=1.2.2,1:textproc/py-sphinx@${PY_FLAVOR} \ dot:graphics/graphviz \ doxygen:devel/doxygen \ MathJax>0:www/mathjax \ xmlto:textproc/xmlto DOCS_CMAKE_ON= -DENABLE_DOCS:STRING="ON" \ -DENABLE_DOXYGEN:STRING="ON" \ -DMATHJAX2_USE_ROOT="${LOCALBASE}/www/MathJax" DOCS_CMAKE_OFF= -DENABLE_DOCS:STRING="OFF" \ -DENABLE_DOXYGEN:STRING="OFF" UHD_CMAKE_ON= -DENABLE_GR_UHD:STRING="ON" UHD_CMAKE_OFF= -DENABLE_GR_UHD:STRING="OFF" ICONDIR= ${PREFIX}/share/icons MIME= ${PREFIX}/share/mime/packages post-install: .for size in 16 24 32 48 64 128 256 ${MKDIR} ${STAGEDIR}${PREFIX}/share/mime/packages ${MKDIR} ${STAGEDIR}${ICONDIR}/gnome/${size}x${size}/apps ${MKDIR} ${STAGEDIR}${ICONDIR}/hicolor/${size}x${size}/apps ${MKDIR} ${STAGEDIR}/share/applications ${INSTALL_DATA} ${WRKSRC}/grc/scripts/freedesktop/grc-icon-${size}.png \ ${STAGEDIR}${ICONDIR}/gnome/${size}x${size}/apps/gnuradio-grc.png ${INSTALL_DATA} ${WRKSRC}/grc/scripts/freedesktop/grc-icon-${size}.png \ ${STAGEDIR}${ICONDIR}/hicolor/${size}x${size}/apps/gnuradio-grc.png ${INSTALL_DATA} ${WRKSRC}/grc/scripts/freedesktop/gnuradio-grc.xml \ ${STAGEDIR}${MIME}/gnuradio-grc.xml ${INSTALL_DATA} ${WRKSRC}/grc/scripts/freedesktop/gnuradio-grc.desktop \ ${STAGEDIR}${PREFIX}/share/applications/gnuradio-grc.desktop .endfor .include .if ${PORT_OPTIONS:MUHD} LIBSTRIP_FILES+= uhd LIB_DEPENDS+= libuhd.so:comms/uhd PLIST_SUB+= UHD="" .else PLIST_SUB+= UHD="@comment " .endif .include diff --git a/comms/nanovna-saver/Makefile b/comms/nanovna-saver/Makefile index bdd7edced48b..8d78c750d5fe 100644 --- a/comms/nanovna-saver/Makefile +++ b/comms/nanovna-saver/Makefile @@ -1,31 +1,31 @@ PORTNAME= nanovna-saver DISTVERSIONPREFIX= v DISTVERSION= 0.5.3 PORTREVISION= 3 CATEGORIES= comms hamradio MAINTAINER= hamradio@FreeBSD.org COMMENT= Multiplatform tool to save Touchstone files from the NanoVNA WWW= https://github.com/NanoVNA-Saver/nanovna-saver LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyserial>0:comms/py-pyserial@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python pyqt:5 USE_PYTHON= distutils autoplist noflavors USE_GITHUB= yes GH_ACCOUNT= NanoVNA-Saver NO_ARCH= yes post-extract: ${CP} ${FILESDIR}/Sysctl.py ${WRKSRC}/NanoVNASaver/Hardware/ .include diff --git a/comms/uhd/Makefile b/comms/uhd/Makefile index 3b3d91b57b7b..9c9a7ef42b89 100644 --- a/comms/uhd/Makefile +++ b/comms/uhd/Makefile @@ -1,81 +1,81 @@ PORTNAME= uhd DISTVERSIONPREFIX= v DISTVERSION= 4.9.0.1 CATEGORIES= comms hamradio DIST_SUBDIR= ${PORTNAME} MAINTAINER= mr@FreeBSD.org COMMENT= Ettus Research UHD driver framework WWW= https://www.ettus.com/sdr-software/uhd-usrp-hardware-driver/ # See https://www.ettus.com/sdr-software/licenses/. Dual license # under GPLv3 and and "Alternate License" whose terms are not documented # on the web site (contact info@ettus.com). Mark as GPLv3 for now # until terms of the "Alternate License" are made clear. When that # is understood and if appropriate, we can add that license here. LICENSE= GPLv3 LIB_DEPENDS= ${PY_BOOST} \ libboost_thread.so:devel/boost-libs BUILD_DEPENDS= \ orcc:devel/orc \ cheetah-analyze:devel/py-cheetah3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ rst2html:textproc/py-docutils@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>=0:devel/py-ruamel.yaml@${PY_FLAVOR} USES= compiler:c++14-lang cmake ncurses pkgconfig \ dos2unix python shebangfix USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= EttusResearch BROKEN_FreeBSD_13_aarch64= fails to configure: Could not find standard set_new_handler function BROKEN_FreeBSD_13_armv6= fails to configure: Could not find standard set_new_handler function BROKEN_FreeBSD_13_armv7= fails to configure: Could not find standard set_new_handler function CMAKE_SOURCE_PATH= ${WRKSRC}/host #CXXFLAGS_amd64= -msse2 -std=c++11 CXXFLAGS_i386= -msse2 LDFLAGS+= ${LDFLAGS_${CHOSEN_COMPILER_TYPE}} LDFLAGS_gcc= -latomic SHEBANG_GLOB= *.py *.py.in *_bist usrp_update* CMAKE_ARGS+= -DPKG_LIB_DIR:STRING="share/uhd" -DUHD_TXRX_DEBUG_PRINTS="yes" # for excruciating debug use this -db CMAKE_ARGS+= -DCMAKE_INCLUDE_PATH="${WRKSRC}/host/include ${LOCALBASE}/include" OPTIONS_DEFINE= DOCS DOXYGEN OPTIONS_DEFAULT= DOCS OPTIONS_SUB= yes DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen DOXYGEN_CMAKE_ON= -DENABLE_DOXYGEN:STRING="ON" DOXYGEN_CMAKE_OFF= -DENABLE_DOXYGEN:STRING="OFF" \ -DENABLE_MANUAL:STRING="OFF" DOXYGEN_PORTDOCS= doxygen do-install: # install host component # hack the install prefix now @${REINPLACE_CMD} -e 's|"${LOCALBASE}"|"${STAGEDIR}${PREFIX}"|g' \ ${CONFIGURE_WRKSRC}/cmake_install.cmake cd ${CONFIGURE_WRKSRC} && ${MAKE_CMD} install post-install: ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/b2xx_fx3_utils ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/usrp_burn_mb_eeprom ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/usrp_burn_db_eeprom ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/query_gpsdo_sensors ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/octoclock_burn_eeprom ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/latency/responder ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/fx2_init_eeprom ${STRIP_CMD} ${STAGEDIR}${DATADIR}/utils/converter_benchmark .include diff --git a/databases/arrow/Makefile b/databases/arrow/Makefile index 80ce62887a35..2fb065a1f8cf 100644 --- a/databases/arrow/Makefile +++ b/databases/arrow/Makefile @@ -1,241 +1,241 @@ PORTNAME= arrow DISTVERSION= 21.0.0 PORTREVISION= 6 CATEGORIES= databases MASTER_SITES= APACHE/${PORTNAME}/${PORTNAME}-${DISTVERSION} \ https://github.com/apache/orc/archive/rel/:orc DISTNAME= apache-${PORTNAME}-${DISTVERSION} DISTFILES= apache-${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX} release-1.6.6${EXTRACT_SUFX}:orc EXTRACT_ONLY= apache-${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Columnar in-memory analytics layer for big data WWW= https://arrow.apache.org \ https://github.com/apache/arrow LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/../LICENSE.txt LIB_DEPENDS= libboost_thread.so:devel/boost-libs USES= cmake compiler:c++17-lang localbase pkgconfig python:build,test USE_LDCONFIG= yes USE_GITHUB= nodefault GH_ACCOUNT= apache #GH_TUPLE= apache:arrow-testing:d2a1371:arrow_testing/testing \ apache:parquet-testing:c7cf137:parquet_testing/cpp/submodules/parquet-testing WRKSRC_SUBDIR= cpp PLIST_SUB= LIBVERSION=2100 CMAKE_ARGS= -DARROW_RUNTIME_SIMD_LEVEL=NONE -DARROW_SIMD_LEVEL=NONE -DCMAKE_CXX_STANDARD=17 CMAKE_OFF= ARROW_BUILD_BENCHMARKS ARROW_BUILD_STATIC ARROW_BUILD_TESTS ARROW_WITH_BACKTRACE BINARY_ALIAS= python=${PYTHON_CMD} # only for tests OPTIONS_GROUP= COMPONENTS COMPRESSION # components are listed in cpp/cmake_modules/DefineOptions.cmake OPTIONS_GROUP_COMPONENTS= ACERO COMPUTE CSV DATASET FILESYSTEM FLIGHT FLIGHT_SQL GANDIVA HDFS IPC JSON MIMALLOC PARQUET ORC S3 SKYHOOK SUBSTRAIT BUILD_UTILITIES TENSORFLOW TESTING OPTIONS_GROUP_COMPRESSION= BROTLI BZ2 LZ4 SNAPPY ZLIB ZSTD OPTIONS_SUB= yes ## DESCs COMPRESSION_DESC= Compression support: COMPONENTS_DESC= Build components: ## Compression options BROTLI_CMAKE_BOOL= ARROW_WITH_BROTLI BROTLI_LIB_DEPENDS= libbrotlicommon.so:archivers/brotli BZ2_DESC= bz2 compression support BZ2_CMAKE_BOOL= ARROW_WITH_BZ2 LZ4_CMAKE_BOOL= ARROW_WITH_LZ4 LZ4_LIB_DEPENDS= liblz4.so:archivers/liblz4 SNAPPY_CMAKE_BOOL= ARROW_WITH_SNAPPY SNAPPY_LIB_DEPENDS= libsnappy.so:archivers/snappy ZLIB_CMAKE_BOOL= ARROW_WITH_ZLIB ZSTD_DESC= zstd compression support ZSTD_CMAKE_BOOL= ARROW_WITH_ZSTD ZSTD_LIB_DEPENDS= libzstd.so:archivers/zstd ## Component options ACERO_DESC= Arrow Acero Engine Module ACERO_CMAKE_BOOL= ARROW_ACERO ACERO_IMPLIES= COMPUTE IPC COMPUTE_DESC= Arrow Compute Modules COMPUTE_CMAKE_BOOL= ARROW_COMPUTE COMPUTE_CMAKE_ON= -DARROW_WITH_UTF8PROC=ON COMPUTE_LIB_DEPENDS= libre2.so:devel/re2 \ libutf8proc.so:textproc/utf8proc CSV_DESC= Arrow CSV Parser Module CSV_CMAKE_BOOL= ARROW_CSV DATASET_DESC= Arrow Dataset Modules DATASET_CMAKE_BOOL= ARROW_DATASET DATASET_IMPLIES= ACERO FILESYSTEM FILESYSTEM_DESC= Arrow Filesystem Layer FILESYSTEM_CMAKE_BOOL= ARROW_FILESYSTEM FLIGHT_DESC= Arrow Flight RPC System FLIGHT_USES= ssl FLIGHT_CMAKE_BOOL= ARROW_FLIGHT FLIGHT_LIB_DEPENDS= libgflags.so:devel/gflags \ libprotobuf.so:devel/protobuf \ libabsl_base.so:devel/abseil \ libcares.so:dns/c-ares \ libgrpc.so:devel/grpc \ libre2.so:devel/re2 FLIGHT_IMPLIES= IPC COMPUTE # see https://github.com/apache/arrow/issues/40766 FLIGHT_SQL_DESC= Arrow Flight SQL FLIGHT_SQL_CMAKE_BOOL= ARROW_FLIGHT_SQL FLIGHT_SQL_IMPLIES= FLIGHT GANDIVA_DESC= Gandiva libraries GANDIVA_USES= llvm:17,lib ssl GANDIVA_CMAKE_BOOL= ARROW_GANDIVA GANDIVA_CMAKE_ON= -DARROW_WITH_UTF8PROC=ON GANDIVA_LIB_DEPENDS= libgrpc.so:devel/grpc \ libprotobuf.so:devel/protobuf \ libre2.so:devel/re2 \ libutf8proc.so:textproc/utf8proc HDFS_DESC= Arrow HDFS bridge HDFS_CMAKE_BOOL= ARROW_HDFS IPC_DESC= Arrow IPC extensions IPC_CMAKE_BOOL= ARROW_IPC JSON_DESC= JSON support JSON_CMAKE_BOOL= ARROW_JSON JSON_BUILD_DEPENDS= ${LOCALBASE}/include/rapidjson/rapidjson.h:devel/rapidjson MIMALLOC_DESC= Arrow mimalloc-based allocato MIMALLOC_CMAKE_BOOL= ARROW_MIMALLOC MIMALLOC_LIB_DEPENDS= libmimalloc.so:devel/mimalloc MIMALLOC_BROKEN= Pending paths fix in bug#255537 PARQUET_DESC= Parquet libraries PARQUET_CMAKE_BOOL= ARROW_PARQUET PARQUET_REQUIRE_ENCRYPTION PARQUET_USES= ssl PARQUET_LIB_DEPENDS= libthrift.so:devel/thrift-cpp PARQUET_IMPLIES= IPC ORC_DESC= Arrow ORC adapter ORC_CMAKE_BOOL= ARROW_ORC ORC_LIB_DEPENDS= libprotobuf.so:devel/protobuf ORC_CONFIGURE_ENV= ARROW_ORC_URL=file://${DISTDIR}/${DIST_SUBDIR}/release-1.6.6${EXTRACT_SUFX} ORC_IMPLIES= LZ4 SNAPPY ZLIB ZSTD # cpp/CMakeLists.txt ORC_BROKEN= fatal error: 'orc/OrcFile.hh' file not found: https://issues.apache.org/jira/browse/ARROW-12624 BUILD_UTILITIES_DESC= build Arrow commandline utilities BUILD_UTILITIES_CMAKE_BOOL= ARROW_BUILD_UTILITIES #PYTHON_DESC= Build python extension support #PYTHON_CMAKE_BOOL= ARROW_PYTHON #PYTHON_USES= python -#PYTHON_BUILD_DEPENDS= ${PYNUMPY} # see https://issues.apache.org/jira/browse/ARROW-16820 -#PYTHON_RUN_DEPENDS= ${PYNUMPY} +#PYTHON_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} # see https://issues.apache.org/jira/browse/ARROW-16820 +#PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} #PYTHON_IMPLIES= COMPUTE CSV DATASET FILESYSTEM HDFS JSON #PYTHON_VARS= PLIST_SUB+=PYTHON_SUFFIX=${PYTHON_SUFFIX} S3_DESC= S3 support S3_CMAKE_BOOL= ARROW_S3 S3_USES= ssl S3_LIB_DEPENDS= \ libaws-c-auth.so:security/aws-c-auth \ libaws-c-cal.so:security/aws-c-cal \ libaws-c-common.so:devel/aws-c-common \ libaws-c-compression.so:devel/aws-c-compression \ libaws-c-event-stream.so:devel/aws-c-event-stream \ libaws-c-http.so:devel/aws-c-http \ libaws-c-io.so:devel/aws-c-io \ libaws-c-mqtt.so:devel/aws-c-mqtt \ libaws-c-s3.so:devel/aws-c-s3 \ libaws-c-sdkutils.so:devel/aws-c-sdkutils \ libaws-checksums.so:devel/aws-checksums \ libaws-crt-cpp.so:devel/aws-crt-cpp \ libaws-cpp-sdk-s3.so:devel/aws-sdk-cpp \ libs2n.so:security/s2n-tls SKYHOOK_DESC= Build the Skyhook libraries SKYHOOK_CMAKE_BOOL= ARROW_SKYHOOK SKYHOOK_IMPLIES= DATASET PARQUET SKYHOOK_BROKEN= could NOT find librados SUBSTRAIT_DESC= Build the Arrow Substrait Consumer Module SUBSTRAIT_CMAKE_BOOL= ARROW_SUBSTRAIT SUBSTRAIT_IMPLIES= DATASET IPC PARQUET SUBSTRAIT_BROKEN= needs investigation TENSORFLOW_DESC= TensorFlow support TENSORFLOW_CMAKE_BOOL= ARROW_TENSORFLOW TENSORFLOW_BROKEN= needs testing TESTING_DESC= Arrow testing libraries TESTING_CMAKE_BOOL= ARROW_TESTING TESTING_LIB_DEPENDS= libgtest.so:devel/googletest # form OPTIONS_DEFAULT .for opt in ${OPTIONS_GROUP_COMPONENTS} ${OPTIONS_GROUP_COMPRESSION} . if "${${opt}_BROKEN}" == "" OPTIONS_DEFAULT+= ${opt} . endif .endfor .include .if ${PORT_OPTIONS:MCOMPUTE} || ${PORT_OPTIONS:MFLIGHT} || ${PORT_OPTIONS:MGANDIVA} PLIST_FILES+= lib/cmake/Arrow/Findre2Alt.cmake .endif .if ${PORT_OPTIONS:MIPC} && ${PORT_OPTIONS:MBUILD_UTILITIES} PLIST_FILES+= bin/arrow-file-to-stream \ bin/arrow-stream-to-file .endif .if ${PORT_OPTIONS:MGANDIVA} || ${PORT_OPTIONS:MCOMPUTE} PLIST_FILES+= lib/cmake/Arrow/Findutf8proc.cmake .endif .if ${PORT_OPTIONS:MGANDIVA} || ${PORT_OPTIONS:MZSTD} PLIST_FILES+= lib/cmake/Gandiva/FindzstdAlt.cmake .endif .if ${PORT_OPTIONS:MPYTHON} == "PYTHON" && ${PORT_OPTIONS:MFLIGHT} == "FLIGHT" PLIST_SUB+= PYTHONFLIGHT="" .else PLIST_SUB+= PYTHONFLIGHT="@comment " .endif .if ${PORT_OPTIONS:MTESTING} && ${PORT_OPTIONS:MFLIGHT} == "FLIGHT" PLIST_SUB+= TESTINGFLIGHT="" .else PLIST_SUB+= TESTINGFLIGHT="@comment " .endif post-install: # based on the user's report on 2024-04-12, the R extension expects only "ON" and "OFF" values in lib/cmake/Arrow/ArrowOptions.cmake # other values confuse the R extension build, so we adjust these values to "ON" and "OFF" as a workaround ${REINPLACE_CMD} -i '' \ -e 's|"true"|"ON"|; s|"false"|"OFF"|' \ ${STAGEDIR}${PREFIX}/lib/cmake/Arrow/ArrowOptions.cmake do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DARROW_BUILD_TESTS:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test # tests as of : 89% tests passed, 10 tests failed out of 90, see https://github.com/apache/arrow/issues/45604 .include diff --git a/databases/py-apache-arrow/Makefile b/databases/py-apache-arrow/Makefile index 485699a67da9..668c4291a5ea 100644 --- a/databases/py-apache-arrow/Makefile +++ b/databases/py-apache-arrow/Makefile @@ -1,43 +1,43 @@ PORTNAME= apache-arrow DISTVERSION= 21.0.0 PORTREVISION= 1 CATEGORIES= databases python MASTER_SITES= APACHE/arrow/arrow-${DISTVERSION} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Columnar in-memory analytics layer for big data WWW= https://arrow.apache.org/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/../LICENSE.txt BROKEN_i386= compilation fails: ran out of registers during register allocation BUILD_DEPENDS= cmake:devel/cmake-core \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libarrow.so:databases/arrow # assumes that arrow is built with PYTHON=ON (python support is built) USES= compiler:c++11-lang pkgconfig python USE_PYTHON= cython distutils pytest # autoplist is broken, see https://issues.apache.org/jira/browse/ARROW-16820 WRKSRC_SUBDIR= python TEST_ENV+= PYTHONPATH=${STAGEDIR}${PYTHON_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/pyarrow/tests MAKE_ENV= FREEBSD_PYTHON_SUFFIX=${PYTHON_SUFFIX} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyarrow/*.cpython-${PYTHON_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyarrow/libarrow_python.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyarrow/libarrow_python_flight.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyarrow/libarrow_python_parquet_encryption.so .include diff --git a/databases/py-duckdb/Makefile b/databases/py-duckdb/Makefile index 51cd9d00a1e6..3f6406639e09 100644 --- a/databases/py-duckdb/Makefile +++ b/databases/py-duckdb/Makefile @@ -1,38 +1,38 @@ PORTNAME= duckdb DISTVERSION= 1.5.0 PORTREVISION= 1 CATEGORIES= databases python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= In-process SQL OLAP database management system WWW= https://duckdb.org/ LICENSE= MIT BUILD_DEPENDS= cmake:devel/cmake-core \ ninja:devel/ninja \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.6.0:devel/py-pybind11@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}google-cloud-storage>0:www/py-google-cloud-storage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mypy>0:devel/py-mypy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} #TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyarrow>0:databases/py-pyarrow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}polars>0:misc/py-polars@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest MAKE_ENV= OVERRIDE_GIT_DESCRIBE=v${DISTVERSION}-g00000000 \ CMAKE_EXECUTABLE=${LOCALBASE}/bin/cmake \ NINJA_EXECUTABLE=${LOCALBASE}/bin/ninja TEST_WRKSRC= ${WRKDIR} # tests fail when run from the build directory due to a name collision with duckdb directory TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # 2 tests fail, see https://github.com/duckdb/duckdb/issues/5642 .include diff --git a/databases/py-redisvl/Makefile b/databases/py-redisvl/Makefile index 9e136c325eb3..1cfef5f644fb 100644 --- a/databases/py-redisvl/Makefile +++ b/databases/py-redisvl/Makefile @@ -1,39 +1,39 @@ PORTNAME= redisvl DISTVERSION= 0.16.0 PORTREVISION= 1 CATEGORIES= databases python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= tagattie@FreeBSD.org COMMENT= Python client library and CLI for using Redis as a vector database WWW= https://github.com/redis/redis-vl-python LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4<7.0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}redis>=5.0<8.0:databases/py-redis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2<3:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tenacity>=8.2.2:devel/py-tenacity@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ml-dtypes>=0.4.0<1.0.0:math/py-ml-dtypes@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-ulid>=3.0.0:textproc/py-python-ulid@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonpath-ng>=1.5.0:devel/py-jsonpath-ng@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes PORTDOCS= CONTRIBUTING.md README.md OPTIONS_DEFINE= DOCS do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_MAN} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .include diff --git a/devel/cpp2py/Makefile b/devel/cpp2py/Makefile index 5357f429506c..7e8bb48a03ee 100644 --- a/devel/cpp2py/Makefile +++ b/devel/cpp2py/Makefile @@ -1,38 +1,38 @@ PORTNAME= cpp2py DISTVERSION= 2.0.0 PORTREVISION= 3 CATEGORIES= devel PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES= 44d5238ab4f05ed4064736ffd2f2b63438d3f64c.patch:-p1 # fix build on i386 MAINTAINER= yuri@FreeBSD.org COMMENT= Reflection tools based on clang WWW= https://github.com/TRIQS/cpp2py LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= cmake compiler:c++14-lang gettext-runtime python shebangfix USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= TRIQS SHEBANG_FILES= bin/c* CMAKE_ARGS= -DPYTHON_INTERPRETER:STRING=${PYTHON_CMD} PORTSCOUT= limit:^[0-9\.]*$$ post-install: # remove the unnecessary file: https://github.com/TRIQS/cpp2py/issues/41 @${RM} ${STAGEDIR}${PREFIX}/share/cpp2pyvars.sh .include diff --git a/devel/py-aiortc/Makefile b/devel/py-aiortc/Makefile index d8927e7ed1a0..8c85af2f009e 100644 --- a/devel/py-aiortc/Makefile +++ b/devel/py-aiortc/Makefile @@ -1,35 +1,35 @@ PORTNAME= aiortc DISTVERSION= 1.14.0 PORTREVISION= 2 CATEGORIES= devel multimedia python www MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= bofh@FreeBSD.org COMMENT= WebRTC and ORTC in Python WWW= https://github.com/aiortc/aiortc/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.0.0:devel/py-cffi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_SETUPTOOLS} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}aioice>=0.10.1:devel/py-aioice@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}av>=14.0.0:multimedia/py-av@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}google-crc32c>=1.1:devel/py-google-crc32c@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyee>=13.0.0:devel/py-pyee@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pylibsrtp>=0.10.0:devel/py-pylibsrtp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyopenssl>=25.0.0:security/py-pyopenssl@${PY_FLAVOR} USES= localbase python USE_PYTHON= autoplist concurrent cryptography pep517 NO_ARCH= yes post-patch: @${REINPLACE_CMD} -e 's|^license = "BSD-3-Clause"|license = { text = "BSD-3-Clause" }|' \ ${WRKSRC}/pyproject.toml .include diff --git a/devel/py-asteval/Makefile b/devel/py-asteval/Makefile index c4e3c67de2ab..354934a939ee 100644 --- a/devel/py-asteval/Makefile +++ b/devel/py-asteval/Makefile @@ -1,24 +1,24 @@ PORTNAME= asteval PORTVERSION= 1.0.5 PORTREVISION= 2 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Safe, minimalistic evaluator of python expression using ast module WWW= https://lmfit.github.io/asteval/ LICENSE= MIT LICENSE_FILES= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes .include diff --git a/devel/py-autoray/Makefile b/devel/py-autoray/Makefile index fa93bda17c47..1d7db4a57b7e 100644 --- a/devel/py-autoray/Makefile +++ b/devel/py-autoray/Makefile @@ -1,35 +1,35 @@ PORTNAME= autoray DISTVERSION= 0.8.4 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Abstract your array operations WWW= https://autoray.readthedocs.io/en/latest/ \ https://github.com/jcmgray/autoray LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} # more backend dependencies are defined but not ported yet BE_DEPENDS= ${PYTHON_PKGNAMEPREFIX}autograd>0:math/py-autograd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sparse>0:devel/py-sparse@${PY_FLAVOR} #BE_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR} # tests crash with tensorflow TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>=0:devel/py-coverage@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>=0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} \ ${BE_DEPENDS} USES= python USE_PYTHON= pep517 autoplist concurrent pytest NO_ARCH= yes # tests as of 0.8.4: 1720 passed, 1286 skipped, 68 xfailed, 12 warnings in 8.02s .include diff --git a/devel/py-beartype/Makefile b/devel/py-beartype/Makefile index b896a9410598..fc704711721f 100644 --- a/devel/py-beartype/Makefile +++ b/devel/py-beartype/Makefile @@ -1,40 +1,40 @@ PORTNAME= beartype DISTVERSION= 0.22.9 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast runtime type checking in pure Python WWW= https://beartype.readthedocs.io/en/latest/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mypy>0:devel/py-mypy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}poetry>0:devel/py-poetry@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyright>0:devel/py-pyright@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typer>0:devel/py-typer@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes BINARY_ALIAS= gcc=${CC} # only for tests # tests as of 0.20.0: 2 failed, 400 passed, 20 skipped in 16.99s # The test test_door_is_bearable_warnings fails: https://github.com/beartype/beartype/issues/497 # The test test_is_hint_pep593_beartype fails: https://github.com/beartype/beartype/issues/498 .include diff --git a/devel/py-bullet3/Makefile b/devel/py-bullet3/Makefile index 8000254a6c42..1db4b8c512b8 100644 --- a/devel/py-bullet3/Makefile +++ b/devel/py-bullet3/Makefile @@ -1,34 +1,34 @@ PORTNAME= bullet3 DISTVERSION= 3.25 PORTREVISION= 3 CATEGORIES= devel PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python version of 3D collision detection library Bullet WWW= https://pybullet.org/wordpress/ LICENSE= ZLIB LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gym>0:math/py-gym@${PY_FLAVOR} USES= compiler:c++11-lang gl localbase python USE_PYTHON= distutils autoplist USE_GL= gl glew USE_GITHUB= yes GH_ACCOUNT= bulletphysics CFLAGS_powerpc64= -mvsx TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pybullet*.so do-test: # test require graphical environment @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test.py .include diff --git a/devel/py-cclib/Makefile b/devel/py-cclib/Makefile index 3d2430d7e6c0..6b212dabb7c8 100644 --- a/devel/py-cclib/Makefile +++ b/devel/py-cclib/Makefile @@ -1,23 +1,23 @@ PORTNAME= cclib PORTVERSION= 1.7.1 PORTREVISION= 3 DISTVERSIONPREFIX= v CATEGORIES= devel python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= robak@FreeBSD.org COMMENT= Parsers And Algorithms For Computational Chemistry WWW= https://cclib.github.io LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils USE_GITHUB= yes .include diff --git a/devel/py-cftime/Makefile b/devel/py-cftime/Makefile index c2a8d55efb3e..5c0106366331 100644 --- a/devel/py-cftime/Makefile +++ b/devel/py-cftime/Makefile @@ -1,28 +1,28 @@ PORTNAME= cftime PORTVERSION= 1.6.5 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Time-handling functionality from netcdf4-python WWW= https://github.com/Unidata/cftime LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>=0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython distutils pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cftime/_cftime${PYTHON_TAG}.so .include diff --git a/devel/py-colorspacious/Makefile b/devel/py-colorspacious/Makefile index a10728bf542f..6765c72e3875 100644 --- a/devel/py-colorspacious/Makefile +++ b/devel/py-colorspacious/Makefile @@ -1,23 +1,23 @@ PORTNAME= colorspacious DISTVERSION= 1.1.2 PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python library for doing colorspace conversions WWW= https://github.com/njsmith/colorspacious LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/devel/py-ewah-bool-utils/Makefile b/devel/py-ewah-bool-utils/Makefile index 1468c500a808..0c72c4030fdf 100644 --- a/devel/py-ewah-bool-utils/Makefile +++ b/devel/py-ewah-bool-utils/Makefile @@ -1,33 +1,33 @@ PORTNAME= ewah-bool-utils DISTVERSION= 1.1.0 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/g}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= EWAH Bool Array utils for yt WWW= https://github.com/yt-project/ewah_bool_utils LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.37.1:devel/py-wheel@${PY_FLAVOR} \ - ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython pep517 pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests fail to run, see https://github.com/yt-project/ewah_bool_utils/issues/41 TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/ewah_bool_utils/_testing${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/ewah_bool_utils/ewah_bool_wrap${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/ewah_bool_utils/morton_utils${PYTHON_TAG}.so .include diff --git a/devel/py-fastf1/Makefile b/devel/py-fastf1/Makefile index ec9003b44fba..05f4ffb1a3c5 100644 --- a/devel/py-fastf1/Makefile +++ b/devel/py-fastf1/Makefile @@ -1,33 +1,33 @@ PORTNAME= fastf1 PORTVERSION= 3.5.3 PORTREVISION= 2 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jgh@FreeBSD.org COMMENT= Python module to accessing and analyzing Formula 1 data WWW= https://github.com/theOehrly/Fast-F1 LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>=0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatch-vcs>=0:devel/py-hatch-vcs@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-cache>=0:www/py-requests-cache@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}signalr-client-aio>=0:devel/py-signalr-client-aio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}thefuzz>=0:devel/py-thefuzz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rapidfuzz>=0:devel/py-rapidfuzz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}timple>=0:math/py-timple@${PY_FLAVOR} USES= python USE_PYTHON= autoplist pep517 NO_ARCH= yes .include diff --git a/devel/py-game/Makefile b/devel/py-game/Makefile index 15d65ff2cc17..a8cb77c59978 100644 --- a/devel/py-game/Makefile +++ b/devel/py-game/Makefile @@ -1,59 +1,59 @@ PORTNAME= game DISTVERSION= 2.6.1 PORTREVISION= 4 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= py${PORTNAME}-${PORTVERSION} MAINTAINER= wen@FreeBSD.org COMMENT= Module designed to write games in Python WWW= https://www.pygame.org/news LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/docs/LGPL.txt BUILD_DEPENDS= v4l_compat>0:multimedia/v4l_compat LIB_DEPENDS= libfreetype.so:print/freetype2 \ libpng.so:graphics/png -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ v4l_compat>0:multimedia/v4l_compat USES= compiler:c11 jpeg localbase pkgconfig python sdl xorg USE_SDL= sdl2 ttf2 image2 mixer2 USE_PYTHON= autoplist distutils USE_XORG= x11 CFLAGS_i386= -msse2 # src_c/image.c:319:12: error: always_inline function '_mm_set_epi32' requires target feature 'sse2' SDLNOX11= sdl-nox11-[0-9]* DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/py-${PORTNAME} OPTIONS_DEFINE= DOCS EXAMPLES PORTDOCS= * PORTEXAMPLES= * post-extract: @${RM} ${WRKSRC}/examples/.editorconfig post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} #Remove Un-needed macosx files @${RM} -r ${WRKSRC}/examples/macosx ${TAR} -C ${WRKSRC}/examples -cf - . | \ ${TAR} --unlink -C ${STAGEDIR}${EXAMPLESDIR} -xf - post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${TAR} -C ${WRKSRC}/docs -cf - . | \ ${TAR} --unlink -C ${STAGEDIR}${DOCSDIR} -xf - post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pygame/*.so ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pygame/_sdl2/*.so .include diff --git a/devel/py-ipydatawidgets/Makefile b/devel/py-ipydatawidgets/Makefile index a548991248ab..b60819dbf19d 100644 --- a/devel/py-ipydatawidgets/Makefile +++ b/devel/py-ipydatawidgets/Makefile @@ -1,25 +1,25 @@ PORTNAME= ipydatawidgets PORTVERSION= 4.3.5 PORTREVISION= 4 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Set of widgets to facilitate reuse of large datasets across widgets WWW= https://github.com/vidartf/ipydatawidgets LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jupyter-packaging>0:devel/py-jupyter-packaging@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipywidgets>=7.0.0:devel/py-ipywidgets@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traittypes>=0.2.0:devel/py-traittypes@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes .include diff --git a/devel/py-ipympl/Makefile b/devel/py-ipympl/Makefile index 6cd29818c136..b64720e8d0e4 100644 --- a/devel/py-ipympl/Makefile +++ b/devel/py-ipympl/Makefile @@ -1,34 +1,34 @@ PORTNAME= ipympl DISTVERSION= 0.9.8 PORTREVISION= 2 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= makc@FreeBSD.org COMMENT= Matplotlib Jupyter extension WWW= https://github.com/matplotlib/ipympl LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE IGNORE_i386= jlpm/node hangs during build stage BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-jupyter-builder>=0.8.3:devel/py-hatch-jupyter-builder@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatch-nodejs-version>=0.3.2:devel/py-hatch-nodejs-version@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab>=4.0.0:devel/py-jupyterlab@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab>=4.0.0:devel/py-jupyterlab@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.5.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR} USES= nodejs:build python USE_PYTHON= autoplist pep517 NO_ARCH= yes .include diff --git a/devel/py-jaxtyping/Makefile b/devel/py-jaxtyping/Makefile index 8483cf8e0902..21682c072b9b 100644 --- a/devel/py-jaxtyping/Makefile +++ b/devel/py-jaxtyping/Makefile @@ -1,32 +1,32 @@ PORTNAME= jaxtyping DISTVERSION= 0.3.5 CATEGORIES= devel MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Type annotations & runtime checking for shape and dtype of JAX arrays WWW= https://docs.kidger.site/jaxtyping/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wadler-lindig>=0.1.3:devel/py-wadler-lindig@${PY_FLAVOR} #TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beartype>=0.21.0:devel/py-beartype@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cloudpickle>=3.1.1:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}equinox>=0.13.1:misc/py-equinox@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jax>0:math/py-jax@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>=1.2.0:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=8.4.2:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typeguard>=2.13.3:devel/py-typeguard@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/devel/py-jep/Makefile b/devel/py-jep/Makefile index c0aa1eac9268..aafbca85b38c 100644 --- a/devel/py-jep/Makefile +++ b/devel/py-jep/Makefile @@ -1,37 +1,37 @@ PORTNAME= jep PORTVERSION= 4.3.1 PORTREVISION= 3 CATEGORIES= devel java python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= ports@FreeBSD.org COMMENT= Java Embedded Python WWW= https://github.com/mrj0/jep LICENSE= ZLIB LICENSE_FILE= ${WRKSRC}/LICENSE USES= java python USE_PYTHON= distutils CONFIGURE_ENV= JAVA_HOME=${JAVA_HOME} MAKE_ENV= JAVA_HOME=${JAVA_HOME} USE_LDCONFIG= yes PLIST_SUB+= VERSION=${PORTVERSION} # Necessary, since the configure script does the LIBS and # LDFLAGS detection wrong CFLAGS+= -I${JAVA_HOME}/include/freebsd LDFLAGS+= -L${LOCALBASE}/lib OPTIONS_DEFINE= NUMPY OPTIONS_DEFAULT= NUMPY -NUMPY_BUILD_DEPENDS= ${PYNUMPY} -NUMPY_RUN_DEPENDS= ${PYNUMPY} +NUMPY_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +NUMPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} post-install: ${LN} -s ${PYTHON_SITELIBDIR}/jep/jep-${PORTVERSION}.jar ${STAGEDIR}${JAVAJARDIR}/jep.jar ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/jep/jep*.so .include diff --git a/devel/py-joblib/Makefile b/devel/py-joblib/Makefile index a4d63d568408..d5734c3a3e8c 100644 --- a/devel/py-joblib/Makefile +++ b/devel/py-joblib/Makefile @@ -1,28 +1,28 @@ PORTNAME= joblib PORTVERSION= 1.5.1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= skreuzer@FreeBSD.org COMMENT= Lightweight pipelining using Python functions as jobs WWW= https://joblib.readthedocs.io/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} #TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}threadpoolctl>0:devel/py-threadpoolctl@${PY_FLAVOR} USES= python USE_PYTHON= autoplist pep517 pytest NO_ARCH= yes PYTEST_IGNORED_TESTS= test_disk_used \ test_parallel_call_cached_function_defined_in_jupyter PYTEST_BROKEN_TESTS= test_memmapping_on_large_enough_dev_shm .include diff --git a/devel/py-jsonpickle/Makefile b/devel/py-jsonpickle/Makefile index 18d3a9a1c911..9e1dc430deea 100644 --- a/devel/py-jsonpickle/Makefile +++ b/devel/py-jsonpickle/Makefile @@ -1,46 +1,46 @@ PORTNAME= jsonpickle DISTVERSION= 4.1.1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python library for serializing any arbitrary object graph into JSON WWW= https://jsonpickle.github.io/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ecdsa>0:security/py-ecdsa@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}feedparser>0:textproc/py-feedparser@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}gmpy2>0:math/py-gmpy2@${PY_FLAVOR}\ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymongo>0:databases/py-pymongo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-checkdocs>=1.2.3:devel/py-pytest-checkdocs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-enabler>=1.0.1:devel/py-pytest-enabler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-ruff>=0.2.1:devel/py-pytest-ruff@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}simplejson>0:devel/py-simplejson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy14>0:databases/py-sqlalchemy14@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ujson>0:devel/py-ujson@${PY_FLAVOR} # ${PYTHON_PKGNAMEPREFIX}yajl>0:devel/py-yajl@${PY_FLAVOR} # is also needed for tests, but isnt't yet ported TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}ecdsa>0:security/py-ecdsa@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gmpy2>0:math/py-gmpy2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0,1:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} USES= cpe python USE_PYTHON= pep517 autoplist pytest # 10 tests fail, see https://github.com/jsonpickle/jsonpickle/issues/492 CPE_VENDOR= ${PORTNAME}_project NO_ARCH= yes .include diff --git a/devel/py-jupyter-rfb/Makefile b/devel/py-jupyter-rfb/Makefile index adc1c7eed3f5..52af43fefe8d 100644 --- a/devel/py-jupyter-rfb/Makefile +++ b/devel/py-jupyter-rfb/Makefile @@ -1,31 +1,31 @@ PORTNAME= jupyter-rfb DISTVERSION= 0.4.4 PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Remote Frame Buffer for Jupyter WWW= https://jupyter-rfb.readthedocs.io/en/stable LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}jupyter-packaging>=0.7.9:devel/py-jupyter-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab>=3.0.0:devel/py-jupyterlab@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}simplejpeg>0:graphics/py-simplejpeg@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>=7.6.0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab-widgets>0:devel/py-jupyterlab-widgets@${PY_FLAVOR} \ - ${PYNUMPY} # probably only one of pillow and simplejpeg is needed + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} # probably only one of pillow and simplejpeg is needed USES= python USE_PYTHON= pep517 autoplist concurrent pytest NO_ARCH= yes .include diff --git a/devel/py-monty/Makefile b/devel/py-monty/Makefile index 59bcec6bebc5..4c651d1fa7ef 100644 --- a/devel/py-monty/Makefile +++ b/devel/py-monty/Makefile @@ -1,43 +1,43 @@ PORTNAME= monty DISTVERSIONPREFIX= v DISTVERSION= 2026.2.18 PORTREVISION= 1 CATEGORIES= devel python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Monty is the missing complement to Python WWW= https://github.com/materialsvirtuallab/monty LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.rst BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>0:devel/py-ruamel.yaml@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}invoke>0:devel/py-invoke@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orjson>=3.6.1:devel/py-orjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= materialsvirtuallab NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests # tests as of 2025.3.3: 3 failed, 197 passed, 4 skipped, 4 warnings in 34.20s, see https://github.com/materialsvirtuallab/monty/issues/765 # tests as of 2026.2.18: 2 failed, 198 passed, 6 skipped, 5 warnings im in 5.30s, see https://github.com/materialyzeai/monty/issues/765#issuecomment-3941522044 .include diff --git a/devel/py-pycompilation/Makefile b/devel/py-pycompilation/Makefile index 84b7defd1e8d..f132e87c173c 100644 --- a/devel/py-pycompilation/Makefile +++ b/devel/py-pycompilation/Makefile @@ -1,23 +1,23 @@ PORTNAME= pycompilation DISTVERSION= 0.4.12 PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for compilation (meta programming) WWW= https://github.com/bjodah/pycompilation LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython_run autoplist NO_ARCH= yes .include diff --git a/devel/py-pyquil/Makefile b/devel/py-pyquil/Makefile index 6b1637adbb9d..0527b2993611 100644 --- a/devel/py-pyquil/Makefile +++ b/devel/py-pyquil/Makefile @@ -1,35 +1,35 @@ PORTNAME= pyquil DISTVERSION= 4.6.1 PORTREVISION= 7 CATEGORIES= devel python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyQuil: Quantum programming in Python WWW= https://github.com/rigetti/pyquil LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}poetry-core>=1.0.0:devel/py-poetry-core@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lark>=0.11.1:devel/py-lark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.5:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=23.1:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic>=1.10.7:devel/py-pydantic@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qcs-sdk-python>=0.16.3:devel/py-qcs-sdk-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}retry2>=0.9.2,<0.10.0:devel/py-retry2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rpcq>=3.10.0<4.0.0:devel/py-rpcq@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.3,1<2.0.0,1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tenacity8>=8.2.2<9.0.0:devel/py-tenacity8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}types-python-dateutil>=2.8.19:devel/py-types-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}types-retry>=0.9.9<1.0.0:devel/py-types-retry@${PY_FLAVOR} \ quilc:lang/quilc USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/devel/py-pysimdjson/Makefile b/devel/py-pysimdjson/Makefile index b1816814fa99..a7e9f65a53da 100644 --- a/devel/py-pysimdjson/Makefile +++ b/devel/py-pysimdjson/Makefile @@ -1,28 +1,28 @@ PORTNAME= pysimdjson PORTVERSION= 6.0.2 PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Python bindings for the simdjson project WWW= https://pysimdjson.tkte.ch/ LICENSE= MIT -#TEST_DEPENDS= ${PYNUMPY} \ +#TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}flake8>=0:devel/py-flake8@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}coverage>=0:devel/py-coverage@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>=0:devel/py-pytest-benchmark@${PY_FLAVOR} USES= python USE_PYTHON= cython distutils CFLAGS_powerpc64= -mpower8-vector .if ! defined(WITH_DEBUG) LDFLAGS+= -s .endif .include diff --git a/devel/py-pytest-arraydiff/Makefile b/devel/py-pytest-arraydiff/Makefile index 22c2484a2010..92df124a5321 100644 --- a/devel/py-pytest-arraydiff/Makefile +++ b/devel/py-pytest-arraydiff/Makefile @@ -1,30 +1,30 @@ PORTNAME= pytest-arraydiff DISTVERSION= 0.6.1 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pytest plugin to help with comparing array output from tests WWW= https://github.com/astropy/pytest-arraydiff LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=4.6:devel/py-pytest@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 0.6.1: 18 passed in 32.31s .include diff --git a/devel/py-pythran/Makefile b/devel/py-pythran/Makefile index a37b031ea698..224aff79a90d 100644 --- a/devel/py-pythran/Makefile +++ b/devel/py-pythran/Makefile @@ -1,32 +1,32 @@ PORTNAME= pythran PORTVERSION= 0.18.1 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Ahead of Time compiler for numeric kernels WWW= https://github.com/serge-sans-paille/pythran LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ply>=3.4:devel/py-ply@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gast>=0.7.0<=0.8:devel/py-gast@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}beniget>=0.4.0:devel/py-beniget@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes post-extract: ${RM} ${WRKSRC}/third_party/xsimd/config/*.rej ${RM} ${WRKSRC}/third_party/xsimd/*.rej ${RM} ${WRKSRC}/third_party/xsimd/math/.xsimd_gamma.hpp.swp .include diff --git a/devel/py-qcs-sdk-python/Makefile b/devel/py-qcs-sdk-python/Makefile index 2862826f9d7c..6e8870e74681 100644 --- a/devel/py-qcs-sdk-python/Makefile +++ b/devel/py-qcs-sdk-python/Makefile @@ -1,568 +1,568 @@ PORTNAME= qcs-sdk-python DISTVERSIONPREFIX= python/v DISTVERSION= 0.21.22 PORTREVISION= 3 CATEGORIES= devel python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/g}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface for the QCS Rust SDK WWW= https://github.com/rigetti/qcs-sdk-rust LICENSE= APACHE20 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}maturin>=1.2.3:devel/py-maturin@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}poetry-core>=1.0.0:devel/py-poetry-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cargo python USE_PYTHON= pep517 autoplist USE_GITHUB= yes GH_ACCOUNT= rigetti GH_PROJECT= qcs-sdk-rust RUSTFLAGS= ${ARCH:S/i386/YES/:C/^[a-z].*//:S/YES/-C target-feature=+sse,+sse2/} # add sse sse2 target-features only on i386 CARGO_CRATES= ahash-0.8.12 \ aho-corasick-1.1.4 \ allocator-api2-0.2.21 \ android_system_properties-0.1.5 \ anyhow-1.0.100 \ approx-0.5.1 \ arc-swap-1.8.0 \ assert2-0.3.16 \ assert2-macros-0.3.16 \ async-socks5-0.6.0 \ async-stream-0.3.6 \ async-stream-impl-0.3.6 \ async-tempfile-0.7.0 \ async-trait-0.1.89 \ atomic-0.6.1 \ atomic-waker-1.1.2 \ autocfg-1.5.0 \ axum-0.7.9 \ axum-core-0.4.5 \ backoff-0.4.0 \ base64-0.21.7 \ base64-0.22.1 \ bindgen-0.72.1 \ bitflags-1.3.2 \ bitflags-2.10.0 \ block-buffer-0.10.4 \ built-0.6.1 \ bumpalo-3.19.1 \ bytecount-0.6.9 \ bytemuck-1.24.0 \ bytes-1.11.0 \ cached-0.44.0 \ cached_proc_macro-0.17.0 \ cached_proc_macro_types-0.1.1 \ cargo-lock-9.0.0 \ cc-1.2.53 \ cesu8-1.1.0 \ cexpr-0.6.0 \ cfg-expr-0.15.8 \ cfg-if-1.0.4 \ cfg_aliases-0.2.1 \ chrono-0.4.43 \ clang-sys-1.8.1 \ combine-4.6.7 \ console-0.15.11 \ core-foundation-0.9.4 \ core-foundation-0.10.1 \ core-foundation-sys-0.8.7 \ cpufeatures-0.2.17 \ crossbeam-0.8.4 \ crossbeam-channel-0.5.15 \ crossbeam-deque-0.8.6 \ crossbeam-epoch-0.9.18 \ crossbeam-queue-0.3.12 \ crossbeam-utils-0.8.21 \ crypto-common-0.1.7 \ darling-0.14.4 \ darling-0.20.11 \ darling_core-0.14.4 \ darling_core-0.20.11 \ darling_macro-0.14.4 \ darling_macro-0.20.11 \ dashmap-5.5.3 \ deranged-0.3.11 \ derive_builder-0.12.0 \ derive_builder-0.20.2 \ derive_builder_core-0.12.0 \ derive_builder_core-0.20.2 \ derive_builder_macro-0.12.0 \ derive_builder_macro-0.20.2 \ diff-0.1.13 \ digest-0.10.7 \ dircpy-0.3.19 \ displaydoc-0.2.5 \ either-1.15.0 \ encode_unicode-1.0.0 \ enum-as-inner-0.5.1 \ equivalent-1.0.2 \ erased-serde-0.3.31 \ errno-0.3.14 \ fastrand-2.3.0 \ figment-0.10.19 \ find-msvc-tools-0.1.8 \ fixedbitset-0.4.2 \ fixedbitset-0.5.7 \ float-cmp-0.9.0 \ fnv-1.0.7 \ foldhash-0.1.5 \ foreign-types-0.3.2 \ foreign-types-shared-0.1.1 \ form_urlencoded-1.2.2 \ futures-0.3.31 \ futures-channel-0.3.31 \ futures-core-0.3.31 \ futures-executor-0.3.31 \ futures-io-0.3.31 \ futures-macro-0.3.31 \ futures-sink-0.3.31 \ futures-task-0.3.31 \ futures-timer-3.0.3 \ futures-util-0.3.31 \ generic-array-0.14.7 \ getrandom-0.2.17 \ getrandom-0.3.4 \ glob-0.3.3 \ h2-0.3.27 \ h2-0.4.13 \ handlebars-4.5.0 \ hashbrown-0.12.3 \ hashbrown-0.13.2 \ hashbrown-0.14.5 \ hashbrown-0.15.5 \ hashbrown-0.16.1 \ headers-0.3.9 \ headers-0.4.1 \ headers-core-0.2.0 \ headers-core-0.3.0 \ heck-0.4.1 \ heck-0.5.0 \ hex-0.4.3 \ home-0.5.12 \ http-0.2.12 \ http-1.4.0 \ http-body-0.4.6 \ http-body-1.0.1 \ http-body-util-0.1.3 \ httparse-1.10.1 \ httpdate-1.0.3 \ hyper-0.14.32 \ hyper-1.8.1 \ hyper-proxy2-0.1.0 \ hyper-rustls-0.26.0 \ hyper-rustls-0.27.7 \ hyper-socks2-0.9.1 \ hyper-timeout-0.5.2 \ hyper-tls-0.6.0 \ hyper-util-0.1.19 \ iana-time-zone-0.1.64 \ iana-time-zone-haiku-0.1.2 \ icu_collections-2.1.1 \ icu_locale_core-2.1.1 \ icu_normalizer-2.1.1 \ icu_normalizer_data-2.1.1 \ icu_properties-2.1.2 \ icu_properties_data-2.1.2 \ icu_provider-2.1.1 \ ident_case-1.0.1 \ idna-1.1.0 \ idna_adapter-1.2.1 \ indexmap-1.9.3 \ indexmap-2.13.0 \ indoc-2.0.7 \ inlinable_string-0.1.15 \ insta-1.46.1 \ instant-0.1.13 \ internment-0.8.6 \ inventory-0.3.21 \ ipnet-2.11.0 \ iri-string-0.7.10 \ itertools-0.11.0 \ itertools-0.12.1 \ itertools-0.13.0 \ itertools-0.14.0 \ itoa-1.0.17 \ jni-0.21.1 \ jni-sys-0.3.0 \ jobserver-0.1.34 \ js-sys-0.3.85 \ jsonwebtoken-9.3.1 \ jwalk-0.8.1 \ lazy_static-1.5.0 \ lexical-7.0.5 \ lexical-core-1.0.6 \ lexical-parse-float-1.0.6 \ lexical-parse-integer-1.0.6 \ lexical-util-1.0.7 \ lexical-write-float-1.0.6 \ lexical-write-integer-1.0.6 \ libc-0.2.180 \ libloading-0.8.9 \ libm-0.2.15 \ libquil-sys-0.4.1 \ linux-raw-sys-0.11.0 \ litemap-0.8.1 \ lock_api-0.4.14 \ log-0.4.29 \ lru-slab-0.1.2 \ malloc_buf-0.0.6 \ maplit-1.0.2 \ matchers-0.2.0 \ matchit-0.7.3 \ matchit-0.8.6 \ matrixmultiply-0.3.10 \ memchr-2.7.6 \ memoffset-0.9.1 \ mime-0.3.17 \ mime_guess-2.0.5 \ minimal-lexical-0.2.1 \ mio-1.1.1 \ multimap-0.10.1 \ nalgebra-0.29.0 \ nalgebra-macros-0.1.0 \ native-tls-0.2.14 \ ndarray-0.15.6 \ ndk-context-0.1.1 \ nom-7.1.3 \ nom_locate-4.2.0 \ nu-ansi-term-0.50.3 \ num-0.4.3 \ num-bigint-0.4.6 \ num-complex-0.4.6 \ num-conv-0.1.0 \ num-integer-0.1.46 \ num-iter-0.1.45 \ num-rational-0.4.2 \ num-traits-0.2.19 \ numpy-0.20.0 \ oauth2-5.0.0 \ objc-0.2.7 \ once_cell-1.21.3 \ openssl-0.10.75 \ openssl-macros-0.1.1 \ openssl-probe-0.1.6 \ openssl-probe-0.2.0 \ openssl-sys-0.9.111 \ opentelemetry-0.27.1 \ opentelemetry-http-0.27.0 \ opentelemetry-otlp-0.27.0 \ opentelemetry-proto-0.27.0 \ opentelemetry_sdk-0.27.1 \ parking_lot-0.12.5 \ parking_lot_core-0.9.12 \ paste-1.0.15 \ pbjson-0.7.0 \ pbjson-build-0.7.0 \ pbjson-types-0.7.0 \ pear-0.2.9 \ pear_codegen-0.2.9 \ pem-3.0.6 \ percent-encoding-2.3.2 \ pest-2.8.5 \ pest_derive-2.8.5 \ pest_generator-2.8.5 \ pest_meta-2.8.5 \ petgraph-0.6.5 \ petgraph-0.7.1 \ pin-project-1.1.10 \ pin-project-internal-1.1.10 \ pin-project-lite-0.2.16 \ pin-utils-0.1.0 \ pkg-config-0.3.32 \ portable-atomic-1.13.0 \ potential_utf-0.1.4 \ powerfmt-0.2.0 \ ppv-lite86-0.2.21 \ prettyplease-0.2.37 \ proc-macro2-1.0.105 \ proc-macro2-diagnostics-0.10.1 \ prost-0.13.5 \ prost-build-0.13.5 \ prost-derive-0.13.5 \ prost-types-0.13.5 \ pyo3-0.20.3 \ pyo3-asyncio-0.20.0 \ pyo3-build-config-0.20.3 \ pyo3-build-config-0.22.6 \ pyo3-ffi-0.20.3 \ pyo3-log-0.8.4 \ pyo3-macros-0.20.3 \ pyo3-macros-backend-0.20.3 \ pyo3-opentelemetry-0.4.0 \ pyo3-opentelemetry-macros-0.4.0 \ pyo3-tracing-subscriber-0.2.0 \ qcs-api-client-common-0.12.12 \ qcs-api-client-grpc-0.12.12 \ qcs-api-client-openapi-0.13.13 \ quinn-0.11.9 \ quinn-proto-0.11.13 \ quinn-udp-0.5.14 \ quote-1.0.43 \ r-efi-5.3.0 \ rand-0.8.5 \ rand-0.9.2 \ rand_chacha-0.3.1 \ rand_chacha-0.9.0 \ rand_core-0.6.4 \ rand_core-0.9.5 \ rand_distr-0.4.3 \ raw-window-handle-0.5.2 \ rawpointer-0.2.1 \ rayon-1.11.0 \ rayon-core-1.13.0 \ redox_syscall-0.5.18 \ regex-1.12.2 \ regex-automata-0.4.13 \ regex-syntax-0.8.8 \ reqwest-0.12.28 \ reqwest-middleware-0.3.3 \ reqwest-middleware-0.4.2 \ reqwest-tracing-0.5.8 \ rigetti-pyo3-0.3.6 \ rigetti-pyo3-0.4.4 \ ring-0.17.14 \ rmp-0.8.15 \ rmp-serde-1.3.1 \ rstest-0.17.0 \ rstest_macros-0.17.0 \ rustc-hash-1.1.0 \ rustc-hash-2.1.1 \ rustc_version-0.4.1 \ rustix-1.1.3 \ rustls-0.22.4 \ rustls-0.23.36 \ rustls-native-certs-0.7.3 \ rustls-native-certs-0.8.3 \ rustls-pemfile-2.2.0 \ rustls-pki-types-1.14.0 \ rustls-webpki-0.102.8 \ rustls-webpki-0.103.9 \ rustversion-1.0.22 \ ryu-1.0.22 \ safe_arch-0.7.4 \ same-file-1.0.6 \ schannel-0.1.28 \ scoped-tls-1.0.1 \ scopeguard-1.2.0 \ security-framework-2.11.1 \ security-framework-3.5.1 \ security-framework-sys-2.15.0 \ semver-1.0.27 \ serde-1.0.228 \ serde_core-1.0.228 \ serde_derive-1.0.228 \ serde_json-1.0.149 \ serde_path_to_error-0.1.20 \ serde_spanned-0.6.9 \ serde_spanned-1.0.4 \ serde_urlencoded-0.7.1 \ sha1-0.10.6 \ sha2-0.10.9 \ sharded-slab-0.1.7 \ shellexpand-3.1.1 \ shlex-1.3.0 \ signal-hook-registry-1.4.8 \ simba-0.6.0 \ similar-2.7.0 \ simple_asn1-0.6.3 \ simple_logger-4.3.3 \ slab-0.4.11 \ smallvec-1.15.1 \ socket2-0.5.10 \ socket2-0.6.1 \ stable_deref_trait-1.2.1 \ statrs-0.16.1 \ strsim-0.10.0 \ strsim-0.11.1 \ strum-0.26.3 \ strum_macros-0.26.4 \ subtle-2.6.1 \ syn-1.0.109 \ syn-2.0.114 \ sync_wrapper-1.0.2 \ synstructure-0.13.2 \ system-deps-6.2.2 \ target-lexicon-0.12.16 \ tempfile-3.24.0 \ test-case-3.3.1 \ test-case-core-3.3.1 \ test-case-macros-3.3.1 \ thiserror-1.0.69 \ thiserror-2.0.18 \ thiserror-impl-1.0.69 \ thiserror-impl-2.0.18 \ thread_local-1.1.9 \ time-0.3.36 \ time-core-0.1.2 \ time-macros-0.2.18 \ tinystr-0.8.2 \ tinyvec-1.10.0 \ tinyvec_macros-0.1.1 \ tokio-1.49.0 \ tokio-macros-2.6.0 \ tokio-native-tls-0.3.1 \ tokio-rustls-0.25.0 \ tokio-rustls-0.26.4 \ tokio-stream-0.1.18 \ tokio-util-0.7.18 \ toml-0.7.8 \ toml-0.8.23 \ toml-0.9.11+spec-1.1.0 \ toml_datetime-0.6.11 \ toml_datetime-0.7.5+spec-1.1.0 \ toml_edit-0.19.15 \ toml_edit-0.22.27 \ toml_edit-0.23.10+spec-1.0.0 \ toml_parser-1.0.6+spec-1.1.0 \ toml_write-0.1.2 \ toml_writer-1.0.6+spec-1.1.0 \ tonic-0.12.3 \ tonic-build-0.12.3 \ tonic-web-0.12.3 \ tower-0.4.13 \ tower-0.5.3 \ tower-http-0.5.2 \ tower-http-0.6.8 \ tower-layer-0.3.3 \ tower-service-0.3.3 \ tracing-0.1.44 \ tracing-attributes-0.1.31 \ tracing-core-0.1.36 \ tracing-log-0.2.0 \ tracing-opentelemetry-0.28.0 \ tracing-serde-0.2.0 \ tracing-subscriber-0.3.22 \ try-lock-0.2.5 \ typenum-1.19.0 \ ucd-trie-0.1.7 \ uncased-0.9.10 \ unicase-2.9.0 \ unicode-ident-1.0.22 \ unindent-0.2.4 \ untrusted-0.9.0 \ url-2.5.8 \ urlpattern-0.4.2 \ utf8_iter-1.0.4 \ uuid-1.19.0 \ valuable-0.1.1 \ vcpkg-0.2.15 \ version-compare-0.2.1 \ version_check-0.9.5 \ walkdir-2.5.0 \ want-0.3.1 \ warp-0.3.7 \ wasi-0.11.1+wasi-snapshot-preview1 \ wasip2-1.0.2+wasi-0.2.9 \ wasm-bindgen-0.2.108 \ wasm-bindgen-futures-0.4.58 \ wasm-bindgen-macro-0.2.108 \ wasm-bindgen-macro-support-0.2.108 \ wasm-bindgen-shared-0.2.108 \ web-sys-0.3.85 \ web-time-1.1.0 \ webbrowser-0.8.15 \ webpki-0.22.4 \ webpki-roots-1.0.5 \ wide-0.7.33 \ winapi-util-0.1.11 \ windows-core-0.62.2 \ windows-implement-0.60.2 \ windows-interface-0.59.3 \ windows-link-0.2.1 \ windows-result-0.4.1 \ windows-strings-0.5.1 \ windows-sys-0.45.0 \ windows-sys-0.48.0 \ windows-sys-0.52.0 \ windows-sys-0.59.0 \ windows-sys-0.60.2 \ windows-sys-0.61.2 \ windows-targets-0.42.2 \ windows-targets-0.48.5 \ windows-targets-0.52.6 \ windows-targets-0.53.5 \ windows_aarch64_gnullvm-0.42.2 \ windows_aarch64_gnullvm-0.48.5 \ windows_aarch64_gnullvm-0.52.6 \ windows_aarch64_gnullvm-0.53.1 \ windows_aarch64_msvc-0.42.2 \ windows_aarch64_msvc-0.48.5 \ windows_aarch64_msvc-0.52.6 \ windows_aarch64_msvc-0.53.1 \ windows_i686_gnu-0.42.2 \ windows_i686_gnu-0.48.5 \ windows_i686_gnu-0.52.6 \ windows_i686_gnu-0.53.1 \ windows_i686_gnullvm-0.52.6 \ windows_i686_gnullvm-0.53.1 \ windows_i686_msvc-0.42.2 \ windows_i686_msvc-0.48.5 \ windows_i686_msvc-0.52.6 \ windows_i686_msvc-0.53.1 \ windows_x86_64_gnu-0.42.2 \ windows_x86_64_gnu-0.48.5 \ windows_x86_64_gnu-0.52.6 \ windows_x86_64_gnu-0.53.1 \ windows_x86_64_gnullvm-0.42.2 \ windows_x86_64_gnullvm-0.48.5 \ windows_x86_64_gnullvm-0.52.6 \ windows_x86_64_gnullvm-0.53.1 \ windows_x86_64_msvc-0.42.2 \ windows_x86_64_msvc-0.48.5 \ windows_x86_64_msvc-0.52.6 \ windows_x86_64_msvc-0.53.1 \ winnow-0.5.40 \ winnow-0.7.14 \ wit-bindgen-0.51.0 \ writeable-0.6.2 \ yansi-1.0.1 \ yoke-0.8.1 \ yoke-derive-0.8.1 \ zerocopy-0.8.33 \ zerocopy-derive-0.8.33 \ zerofrom-0.1.6 \ zerofrom-derive-0.1.6 \ zeroize-1.8.2 \ zeromq-src-0.2.6+4.3.4 \ zerotrie-0.2.3 \ zerovec-0.11.5 \ zerovec-derive-0.11.2 \ zmij-1.0.15 \ zmq-0.10.0 \ zmq-sys-0.12.0 \ quil-rs@git+https://github.com/rigetti/quil-rs?tag=quil-rs%2Fv0.32.0\#9db8cb4cfe75e67a4fa572e96e86ae8e59d0bdfc CARGO_BUILD= no CARGO_INSTALL= no CARGO_TEST= no CARGO_TARGET_DIR= ${WRKSRC}/crates/python MAKE_ENV= ${CARGO_ENV} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${BUILD_WRKDIR} WRKSRC_SUBDIR= crates/python OPENSSLINC= /usr/include OPENSSLLIB= /usr/lib BINARY_ALIAS= python3=${PYTHON_CMD} post-patch: @${MKDIR} ${WRKDIR}/quil-rs-quil-rs%2Fv0.32.0 @${MV} ${WRKDIR}/quil-rs-quil-rs-v0.32.0/* ${WRKDIR}/quil-rs-quil-rs-v0.32.0/.[!.]* ${WRKDIR}/quil-rs-quil-rs%2Fv0.32.0/ 2>/dev/null || true @${RMDIR} ${WRKDIR}/quil-rs-quil-rs-v0.32.0 || true # prevent breakage due to crates/.cargo inclusion @${REINPLACE_CMD} \ -e 's|members = \["crates/\*"\]|members = ["crates/python"]|' \ ${WRKSRC}/../../Cargo.toml .include diff --git a/devel/py-qutip-qip/Makefile b/devel/py-qutip-qip/Makefile index 69788fbc3631..fe7155ac956c 100644 --- a/devel/py-qutip-qip/Makefile +++ b/devel/py-qutip-qip/Makefile @@ -1,33 +1,33 @@ PORTNAME= qutip-qip DISTVERSION= 0.4.1 PORTREVISION= 1 CATEGORIES= devel MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= qutip_qip-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= QuTiP quantum information processing package WWW= https://github.com/qutip/qutip-qip LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qutip>=4.5:devel/py-qutip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0:science/py-scipy@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} # optional dependency required for tests RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyqir>0:misc/py-pyqir@${PY_FLAVOR} # optional USES= python USE_PYTHON= distutils autoplist pytest # 1 test fails, see https://github.com/qutip/qutip-qip/issues/214 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHON_SITELIBDIR} NO_ARCH= yes post-patch: @cd ${WRKSRC} && ${ECHO} ${DISTVERSION} > VERSION .include diff --git a/devel/py-qutip/Makefile b/devel/py-qutip/Makefile index e546b5f68f86..f7cf185518f0 100644 --- a/devel/py-qutip/Makefile +++ b/devel/py-qutip/Makefile @@ -1,40 +1,40 @@ PORTNAME= qutip DISTVERSION= 5.0.4 PORTREVISION= 3 CATEGORIES= devel MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum toolbox in python WWW= https://qutip.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.9:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.32.0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} # the optional graphics/py-mayavi dependency is omitted because it is python-2.7 -only USES= python USE_PYTHON= autoplist cython cython_run pep517 post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/qutip/*/*${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/qutip/*/*/*${PYTHON_TAG}.so do-test: # 3 tests fail, see https://github.com/qutip/qutip/issues/2190 @${ECHO} "==> Running tests. Please note that tests require X11 display access." @cd ${WRKDIR} && ${SETENV} ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHON_SITELIBDIR} \ ${PYTHON_CMD} -c "import qutip.testing as qt; qt.run();" .include diff --git a/devel/py-rapidfuzz/Makefile b/devel/py-rapidfuzz/Makefile index 240688779e25..1bd99f563cbf 100644 --- a/devel/py-rapidfuzz/Makefile +++ b/devel/py-rapidfuzz/Makefile @@ -1,42 +1,42 @@ PORTNAME= rapidfuzz DISTVERSION= 3.14.0 PORTREVISION= 1 CATEGORIES= devel MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Rapid fuzzy string matching in Python WWW= https://github.com/rapidfuzz/RapidFuzz LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= cmake:devel/cmake-core \ ninja:devel/ninja \ rapidfuzz-cpp>0:devel/rapidfuzz-cpp \ taskflow>0:devel/taskflow \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rapidfuzz-capi>=1.0.5:devel/py-rapidfuzz-capi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.10.7:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>=0.13.0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @cd ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME} && \ ${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/distance/*.so ${PYTHON_CMD} -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${PYTHON_CMD} -O -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} # tests as of 3.14.0: 388 passed in 90.91s (0:01:30) .include diff --git a/devel/py-rpcq/Makefile b/devel/py-rpcq/Makefile index 406e9877a4cc..8199be90991b 100644 --- a/devel/py-rpcq/Makefile +++ b/devel/py-rpcq/Makefile @@ -1,30 +1,30 @@ PORTNAME= rpcq DISTVERSION= 3.11.0 PORTREVISION= 5 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= RPC framework and message specification for Rigetti QCS WWW= https://github.com/rigetti/rpcq LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}msgpack>=0.6:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-rapidjson>0:devel/py-python-rapidjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyzmq>=17:net/py-pyzmq@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>0:devel/py-ruamel.yaml@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=5.4.0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>0:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/devel/py-spyder-kernels/Makefile b/devel/py-spyder-kernels/Makefile index 37b261b16afe..30b984938fa5 100644 --- a/devel/py-spyder-kernels/Makefile +++ b/devel/py-spyder-kernels/Makefile @@ -1,55 +1,55 @@ PORTNAME= spyder-kernels DISTVERSION= 3.0.5 PORTREVISION= 2 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= spyder_kernels-${DISTVERSION} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Jupyter kernels for the Spyder console WWW= https://github.com/spyder-ide/spyder-kernels LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipykernel>=6.29.3:devel/py-ipykernel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipyparallel>0:devel/py-ipyparallel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>=8.13.0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyter-client>=7.4.9:devel/py-jupyter-client@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyxdg>0:devel/py-pyxdg@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyzmq>=24.0.0:net/py-pyzmq@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traitlets>=5.14.3:devel/py-traitlets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wurlitzer>=1.0.3:misc/py-wurlitzer@${PY_FLAVOR} # 'make test' not applicable for now because the test files are missing in the tarball # 100 passed, 7 skipped, 4 warnings # 1 failure may occur, see https://github.com/spyder-ide/spyder-kernels/issues/501 # test_django_settings fail if www/djangoXX not installed -#TEST_DEPENDS= ${PYNUMPY} \ +#TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}codecov>0:devel/py-codecov@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}dask>0:devel/py-dask@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}distributed>0:devel/py-distributed@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}flaky>0:devel/py-flaky@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pydicom>0:science/py-pydicom@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-forked>0:devel/py-pytest-forked@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}xarray>0:devel/py-xarray@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent distutils #pytest NO_ARCH= yes .include diff --git a/devel/py-tables/Makefile b/devel/py-tables/Makefile index 8f55bfc89781..2c59faf2a392 100644 --- a/devel/py-tables/Makefile +++ b/devel/py-tables/Makefile @@ -1,51 +1,51 @@ PORTNAME= tables PORTVERSION= 3.10.2 PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Hierarchical database for Python WWW= https://www.pytables.org/ LICENSE= BSD3CLAUSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numexpr>=1.4.1:math/py-numexpr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}py-cpuinfo>=0:sysutils/py-py-cpuinfo@${PY_FLAVOR} LIB_DEPENDS= libhdf5.so:science/hdf5 \ liblzo2.so:archivers/lzo2 \ libucl.so:archivers/ucl \ libblosc2.so:archivers/c-blosc2 RUN_DEPENDS:= ${BUILD_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}six>=1.9.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=2.0:devel/py-mock@${PY_FLAVOR} CONFLICTS_BUILD= zstd # conflicting version of zstd is bundled USES= fortran localbase python USE_PYTHON= autoplist concurrent distutils cython PORTEXAMPLES= * OPTIONS_DEFINE= EXAMPLES OPTIONS_DEFINE_amd64= AVX2 AVX2_DESC= Enable Haswell New Instructions (AVX2) support # Explicitly disable AVX2 otherwise it will be automatically enabled if the CPU # supports it. If compiled in and run on hosts that have no AVX2 support, it # will trigger a SIGILL (Illegal instruction) # See also: https://github.com/PyTables/PyTables/issues/841 AVX2_VARS_OFF= MAKE_ENV+=DISABLE_AVX2=yes post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/tables/*.so post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${WRKSRC}/examples/*.py ${STAGEDIR}${EXAMPLESDIR} .include diff --git a/devel/py-tabulate2/Makefile b/devel/py-tabulate2/Makefile index be3a81ae20f2..1ecf371a8ca9 100644 --- a/devel/py-tabulate2/Makefile +++ b/devel/py-tabulate2/Makefile @@ -1,27 +1,27 @@ PORTNAME= tabulate2 PORTVERSION= 1.10.0 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pretty-print tabular data in Python (new gen) WWW= https://github.com/RaSan147/python-tabulate LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=3.4.3:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist concurrent pytest # one test hangs NO_ARCH= yes .include diff --git a/devel/py-traits/Makefile b/devel/py-traits/Makefile index 0644e7294796..487847306d00 100644 --- a/devel/py-traits/Makefile +++ b/devel/py-traits/Makefile @@ -1,19 +1,19 @@ PORTNAME= traits PORTVERSION= 7.1.0 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Explicitly Typed Attributes for Python WWW= https://pypi.org/project/traits/ LICENSE= BSD3CLAUSE PSFL LICENSE_COMB= multi -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist .include diff --git a/devel/py-xarray-einstats/Makefile b/devel/py-xarray-einstats/Makefile index 219272f3af19..c7abae6ab835 100644 --- a/devel/py-xarray-einstats/Makefile +++ b/devel/py-xarray-einstats/Makefile @@ -1,38 +1,38 @@ PORTNAME= xarray-einstats DISTVERSIONPREFIX= v DISTVERSION= 0.8.0 PORTREVISION= 1 CATEGORIES= devel python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Stats, linear algebra and einops for xarray WWW= https://github.com/arviz-devs/xarray-einstats LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}einops>0:misc/py-einops@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.9:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray>=2022.09.0:devel/py-xarray@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ USES= python USE_PYTHON= pep517 concurrent autoplist pytest USE_GITHUB= yes GH_ACCOUNT= arviz-devs TEST_WRKSRC= ${WRKSRC}/tests # 1 test fails, see https://github.com/arviz-devs/xarray-einstats/issues/67 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/devel/py-xarray-simlab/Makefile b/devel/py-xarray-simlab/Makefile index b1ec3240a483..03e123220acb 100644 --- a/devel/py-xarray-simlab/Makefile +++ b/devel/py-xarray-simlab/Makefile @@ -1,30 +1,30 @@ PORTNAME= xarray-simlab DISTVERSION= 0.5.0-5 PORTREVISION= 3 DISTVERSIONSUFFIX= -g33a4c83 CATEGORIES= devel python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Xarray extension and framework for computer model simulations WWW= https://xarray-simlab.readthedocs.io/en/latest/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE USES= python USE_PYTHON= distutils autoplist pytest # 1 test fails, see https://github.com/xarray-contrib/xarray-simlab/issues/192 USE_GITHUB= yes GH_ACCOUNT= xarray-contrib RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}attrs>=18.1.0:devel/py-attrs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dask>0:devel/py-dask@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray>=0.10.0:devel/py-xarray@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}zarr>=2.3.0:devel/py-zarr@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}distributed>0:devel/py-distributed@${PY_FLAVOR} # extra dep for devel/py-dask NO_ARCH= yes .include diff --git a/devel/py-zarr/Makefile b/devel/py-zarr/Makefile index 84a62fcb53a0..6795b1283f7f 100644 --- a/devel/py-zarr/Makefile +++ b/devel/py-zarr/Makefile @@ -1,30 +1,30 @@ PORTNAME= zarr DISTVERSION= 2.18.4 PORTREVISION= 1 CATEGORIES= devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Implementation of chunked, compressed, N-dimensional arrays for Python WWW= https://zarr.readthedocs.io/en/stable/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}asciitree>0:graphics/py-asciitree@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fasteners>0:devel/py-fasteners@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numcodecs>=0.10.0:misc/py-numcodecs@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # 32 tests fail, see https://github.com/zarr-developers/zarr-python/issues/1819#issuecomment-2359908101 NO_ARCH= yes .include diff --git a/devel/py-zfp/Makefile b/devel/py-zfp/Makefile index b79799d3ca79..07881baccf31 100644 --- a/devel/py-zfp/Makefile +++ b/devel/py-zfp/Makefile @@ -1,33 +1,33 @@ PORTNAME= zfp DISTVERSION= 1.0.1 PORTREVISION= 1 CATEGORIES= devel science MASTER_SITES= https://github.com/LLNL/${PORTNAME}/releases/download/${DISTVERSION}/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High throughput library for compressed floating-point arrays WWW= https://computing.llnl.gov/projects/zfp \ https://github.com/LLNL/zfp LICENSE= MIT LICENSE_FILE= ${WRKSRC}/scikit-build-cmake/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} LIB_DEPENDS= libzfp.so:devel/zfp -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake localbase:ldflags python USE_PYTHON= cython flavors pytest WRKSRC_SUBDIR= python TEST_WRKSRC= ${WRKSRC}/../tests/python TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} PLIST_FILES= ${PYTHON_SITELIBDIR}/zfpy${PYTHON_TAG}.so # tests fail to run, see https://github.com/LLNL/zfp/issues/251 .include diff --git a/devel/root/Makefile b/devel/root/Makefile index 864f296de111..205ee279464c 100644 --- a/devel/root/Makefile +++ b/devel/root/Makefile @@ -1,259 +1,259 @@ PORTNAME= root DISTVERSION= 6.38.00 PORTREVISION= 1 CATEGORIES= devel science math parallel python MASTER_SITES= https://root.cern/download/ DISTFILES= ${PORTNAME}_v${DISTVERSION}.source${EXTRACT_SUFX} MAINTAINER= erik@tenku.dk COMMENT= Data analysis framework made at CERN WWW= https://root.cern/ LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LGPL2_1.txt BROKEN_i386= std::uint64_t to std::size_t narrowing conversion issue introduced in version 6.34.02 BUILD_AND_RUN_DEPENDS= bash:shells/bash \ nlohmann-json>=3:devel/nlohmann-json BUILD_DEPENDS= ${BUILD_AND_RUN_DEPENDS} LIB_DEPENDS= libfreetype.so:print/freetype2 \ liblz4.so:archivers/liblz4 \ libpcre2-8.so:devel/pcre2 \ libxxhash.so:devel/xxhash \ libzstd.so:archivers/zstd RUN_DEPENDS= ${BUILD_AND_RUN_DEPENDS} USES= cmake desktop-file-utils iconv shebangfix SHEBANG_FILES= main/python/rootcp.py \ main/python/rootdrawtree.py \ main/python/rooteventselector.py \ main/python/rootmkdir.py \ main/python/rootmv.py \ main/python/rootprint.py \ main/python/rootrm.py \ main/python/rootslimtree.py \ config/rootssh \ etc/dictpch/makepch.py \ etc/pdg_table_update.py \ etc/runfirefox.sh # add a port-specific shebang to be replaced python_OLD_CMD+= "/usr/bin/env @python@" # Flags and environment variables for building CMAKE_ON= builtin_civetweb builtin_clang builtin_cling builtin_llvm builtin_openui5 \ fail-on-missing gnuinstall shared soversion thisroot_scripts CMAKE_OFF= arrow builtin_cfitsio builtin_cppzmq builtin_davix builtin_fftw3 \ builtin_freetype builtin_ftgl builtin_gif builtin_gl2ps builtin_glew \ builtin_gsl builtin_gtest builtin_jpeg builtin_lz4 builtin_lzma \ builtin_nlohmannjson builtin_openssl builtin_pcre builtin_png builtin_tbb \ builtin_unuran builtin_vc builtin_vdt builtin_veccore builtin_xrootd \ builtin_xxhash builtin_zeromq builtin_zlib builtin_zstd cefweb check_connection \ clad cocoa cuda daos dcache experimental_adaptivecpp experimental_genvectorx \ fcgi geombuilder gviz libcxx llvm13_broken_tests macos_native memory_termination \ minuit2_mpi minuit2_omp mpi pythia8 r roofit_multiprocess runtime_cxxmodules \ shadowpw test_distrdf_dask test_distrdf_pyspark tmva-cudnn tmva-gpu tmva-rmva \ tmva-sofie unuran uring use_gsl_cblas vc veccore vecgeom win_broken_tests \ winrtdebug # See https://root.cern/install/build_from_source/#all-build-options OPTIONS_DEFINE= DOCS ASIMAGE DATAFRAME DAVIX FFTW3 FITSIO FORTRAN GDML GEOM \ HTTP IMT MATHMORE OPENGL PYROOT QT6WEB ROOFIT ROOT7 SPECTRUM \ SQLITE SSL MLP TMVA UNFOLD VDT WEBGUI X11 XML XROOTD OPTIONS_DEFAULT= ASIMAGE DATAFRAME DAVIX FITSIO GDML GEOM HTTP IMT OPENGL PYROOT \ ROOFIT ROOT7 SPECTRUM SQLITE SSL MLP TMVA UNFOLD VDT WEBGUI X11 XML XROOTD OPTIONS_SUB= yes ASIMAGE_CMAKE_BOOL= asimage asimage_tiff ASIMAGE_DESC= Enable support for image processing via libAfterImage ASIMAGE_IMPLIES= X11 ASIMAGE_LIB_DEPENDS= libgif.so:graphics/giflib \ libpng16.so:graphics/png \ libtiff.so:graphics/tiff ASIMAGE_USES= jpeg # TODO: clad can only be included in ROOT's configure stage # with network access, however, a port of clad is available -- patch #CLAD_CMAKE_BOOL= clad #CLAD_DESC= Build clad, the cling automatic differentiation plugin #CLAD_LIB_DEPENDS= libclad.so:math/clad #CLAD_CMAKE_ON= -DCLAD_SOURCE_DIR= DATAFRAME_CMAKE_BOOL= dataframe DATAFRAME_DESC= Enable ROOT RDataFrame DAVIX_CMAKE_BOOL= davix DAVIX_DESC= Enable support for Davix (HTTP/WebDAV access) DAVIX_LIB_DEPENDS= libdavix.so:www/davix DAVIX_USES= pkgconfig # TODO #EXPERIMENTALADAPTIVECPP_CMAKE_BOOL= experimental_adaptivecpp # TODO #EXPERIMENTALGENVECTORX_CMAKE_BOOL= experimental_genvectorx # TODO #FCGI_CMAKE_BOOL= fcgi FFTW3_CMAKE_BOOL= fftw3 FFTW3_DESC= Enable support for FFTW3 FFTW3_LIB_DEPENDS= libfftw3.so:math/fftw3 FITSIO_CMAKE_BOOL= fitsio FITSIO_DESC= Enable support for reading FITS images FITSIO_LIB_DEPENDS= libcfitsio.so:astro/cfitsio \ libcurl.so:ftp/curl FORTRAN_CMAKE_BOOL= fortran FORTRAN_DESC= Build Fortran components of ROOT FORTRAN_USES= fortran GDML_CMAKE_BOOL= gdml GDML_DESC= Enable support for GDML (Geometry Description Markup Language) GDML_IMPLIES= GEOM GEOM_CMAKE_BOOL= geom GEOM_DESC= Enable support for the geometry library # TODO: Missing include in TGeoParaEditor.cxx in upstream; wait for fix #GEOMBUILDER_CMAKE_BOOL= geombuilder #GEOMBUILDER_DESC= Enable support for the geombuilder library #GEOMBUILDER_IMPLIES= GEOM # TODO #GVIZ_CMAKE_BOOL= gviz HTTP_CMAKE_BOOL= http HTTP_DESC= Enable support for HTTP server HTTP_IMPLIES= ROOT7 WEBGUI IMT_CMAKE_BOOL= imt IMT_DESC= Enable support for implicit multi-threading via Intel® Thread Building Blocks (TBB) IMT_LIB_DEPENDS= libtbb.so:devel/onetbb MATHMORE_CMAKE_BOOL= mathmore MATHMORE_DESC= Build libMathMore extended math library MATHMORE_LIB_DEPENDS= libgsl.so:math/gsl # TODO #MINUIT2MPI_CMAKE_BOOL= minuit2_mpi # TODO #MINUIT2OMP_CMAKE_BOOL= minuit2_omp MLP_CMAKE_BOOL= mlp MLP_DESC= Enable support for TMultilayerPerceptron classes' federation MLP_IMPLIES= TMVA MATHMORE # TODO #MPI_CMAKE_BOOL= mpi OPENGL_CMAKE_BOOL= opengl OPENGL_DESC= Enable support for OpenGL OPENGL_IMPLIES= X11 ASIMAGE OPENGL_LIB_DEPENDS= libftgl.so:graphics/ftgl \ libgl2ps.so:print/gl2ps OPENGL_USES= gl OPENGL_USE= gl=glew,glu,opengl PYROOT_CMAKE_BOOL= pyroot tpython tmva-pymva PYROOT_DESC= Enable bindings between Python and C++ with PyROOT -PYROOT_BUILD_DEPENDS= ${PYNUMPY} +PYROOT_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYROOT_USES= python:build,run PYROOT_USES_OFF= python:build QT6WEB_CMAKE_BOOL= qt6web QT6WEB_DESC= Enable support for Qt6 web-based display QT6WEB_IMPLIES= WEBGUI OPENGL QT6WEB_USES= qt:6 QT6WEB_USE= qt=base,declarative,positioning,webchannel,webengine ROOFIT_CMAKE_BOOL= roofit ROOFIT_DESC= Build the advanced fitting package RooFit, and RooStats for statistical tests ROOT7_CMAKE_BOOL= root7 ROOT7_DESC= Build ROOT 7 components of ROOT SPECTRUM_CMAKE_BOOL= spectrum SPECTRUM_DESC= Enable support for TSpectrum SQLITE_CMAKE_BOOL= sqlite SQLITE_DESC= Enable support for SQLite SQLITE_USES= sqlite SSL_CMAKE_BOOL= ssl SSL_DESC= Enable support for SSL encryption via OpenSSL SSL_USES= ssl TMVA_CMAKE_BOOL= tmva tmva-cpu TMVA_DESC= Build TMVA multi variate analysis library, including TMVA with CPU support for deep learning TMVA_IMPLIES= IMT MATHMORE TMVA_LIB_DEPENDS= libopenblas.so:math/openblas UNFOLD_CMAKE_BOOL= unfold UNFOLD_DESC= Enable the unfold package UNFOLD_IMPLIES= XML # TODO #UNURAN_CMAKE_BOOL= unuran VDT_CMAKE_BOOL= vdt VDT_DESC= Enable support for VDT (fast and vectorisable mathematical functions) VDT_LIB_DEPENDS= libvdt.so:math/vdt # TODO #VECCORE_CMAKE_BOOL= veccore # TODO #VECGEOM_CMAKE_BOOL= vecgeom WEBGUI_CMAKE_BOOL= webgui WEBGUI_DESC= Build Web-based UI components of ROOT WEBGUI_IMPLIES= HTTP ROOT7 X11_CMAKE_BOOL= x11 X11_DESC= Enable support for X11/Xft X11_USES= xorg X11_USE= xorg=ice,sm,x11,xau,xaw,xcb,xcomposite,xcursor,xdamage,xdmcp,xext \ xorg=xfixes,xfont,xfont2,xft,xi,xinerama,xkbfile,xmu,xpm,xrandr,xrender \ xorg=xres,xscrnsaver,xt,xv,xxf86vm XML_CMAKE_BOOL= xml XML_DESC= Enable support for XML XML_USES= gnome XML_USE= gnome=libxml2 XROOTD_CMAKE_BOOL= xrootd XROOTD_DESC= Enable support for XRootD file server and client XROOTD_LIB_DEPENDS= libXrdCl.so:databases/xrootd .include ROOT_CLANG_VER= 20 PLIST_SUB+= PYVER="${PYTHON_VER:S/./_/}" \ ROOT_CLANG_VER="${ROOT_CLANG_VER}" \ SHLIB_SHVER="${DISTVERSION:R}" \ SHLIB_VER="${DISTVERSION}" # A few headers are only installed on aarch64 .if ${OPSYS} == FreeBSD && ${ARCH} == "aarch64" PLIST_SUB+= ONLY_INSTALLED_ON_AARCH64="" .else PLIST_SUB+= ONLY_INSTALLED_ON_AARCH64="@comment " .endif # Files in ${PREFIX}/lib/root/__pycache__ have links into WRKDIR and should not be staged # Files in wrkdirs are generated during build of libAfterImage and should not be staged post-install: ${RM} -r ${STAGEDIR}${PREFIX}/lib/root/__pycache__ ${RM} -r ${STAGEDIR}/wrkdirs .if ${PORT_OPTIONS:MPYROOT} ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/root/cppyy/libcppyy.so.${DISTVERSION} ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/root/ROOT/libROOTPythonizations.so .endif .include diff --git a/devel/shiboken6/Makefile b/devel/shiboken6/Makefile index 1e2731285998..fde201400b37 100644 --- a/devel/shiboken6/Makefile +++ b/devel/shiboken6/Makefile @@ -1,66 +1,66 @@ PORTNAME= shiboken6 DISTVERSION= ${PYSIDE6_VERSION} PORTREVISION= 1 CATEGORIES= devel MASTER_SITES= QT/official_releases/QtForPython/pyside6/PySide6-${DISTVERSION}-src PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= pyside-setup-everywhere-src-${DISTVERSION} DIST_SUBDIR= KDE/Qt/${PYSIDE6_VERSION} MAINTAINER= kde@FreeBSD.org COMMENT= Python binding generator for C++ libraries WWW= http://qt-project.org LICENSE= GPLv2 LGPL21 LGPL3 LICENSE_COMB= multi LIB_DEPENDS= libxslt.so:textproc/libxslt USES= cmake compiler:c++17-lang gnome llvm:lib,min=17,noexport pathfix \ python qt:6 tar:xz USE_GNOME= libxml2 USE_LDCONFIG= ${PREFIX}/${PORTNAME} USE_PYTHON= flavors USE_QT= base CMAKE_ARGS= -DClang_DIR:PATH="${LLVM_PREFIX}/lib/cmake/clang" \ -DLLVM_DIR:PATH="${LLVM_PREFIX}/lib/cmake/llvm" \ -DCMAKE_CXX_STANDARD_LIBRARIES=-lexecinfo \ -DUSE_PYTHON_VERSION=${PYTHON_VER} \ -DBUILD_TESTS:BOOL=false CONFIGURE_ENV= LLVM_INSTALL_DIR="${LLVM_PREFIX}/lib/cmake/llvm" WRKSRC_SUBDIR= sources/shiboken6 PLIST_SUB= PYTHON_MAJOR_VER=${PYTHON_MAJOR_VER} \ SHLIB_VER=${DISTVERSION:R} \ SHLIB_VERSION=${DISTVERSION} OPTIONS_DEFINE= DOCS NUMPY OPTIONS_DEFAULT= NUMPY DOCS_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}furo>0:textproc/py-furo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}myst-parser>0:textproc/py-myst-parser@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx-copybutton>0:textproc/py-sphinx-copybutton@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx-design>0:textproc/py-sphinx-design@${PY_FLAVOR} DOCS_ALL_TARGET= all doc DOCS_PORTDOCS= * -NUMPY_BUILD_DEPENDS= ${PYNUMPY} -NUMPY_RUN_DEPENDS= ${PYNUMPY} +NUMPY_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +NUMPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} NUMPY_CMAKE_ON= -DNUMPY_INCLUDE_DIR:PATH="${PYTHON_SITELIBDIR}/numpy/core/include" post-install: ${RM} ${STAGEDIR}${PREFIX}/bin/shiboken_tool.py ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ -f -d ${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py \ -f -d ${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR}/html (cd ${BUILD_WRKSRC}/doc/html; ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}/html) .include diff --git a/devel/vitables/Makefile b/devel/vitables/Makefile index 04b269def7f3..2b2b67912b2a 100644 --- a/devel/vitables/Makefile +++ b/devel/vitables/Makefile @@ -1,30 +1,30 @@ PORTNAME= vitables DISTVERSIONPREFIX= v DISTVERSION= 3.1.0 PORTREVISION= 1 CATEGORIES= devel science python MAINTAINER= yuri@FreeBSD.org COMMENT= Viewer and editor of files in both PyTables format and HDF5 format WWW= https://github.com/uvemas/ViTables LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}QtPy>=2.2:devel/py-QtPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tables>=3.0:devel/py-tables@${PY_FLAVOR} USES= dos2unix python pyqt:5 USE_PYTHON= pep517 cython noflavors autoplist pytest # 3 tests fail, see https://github.com/uvemas/ViTables/issues/124 USE_PYQT= pyqt5:run USE_GITHUB= yes GH_ACCOUNT= uvemas GH_PROJECT= ViTables NO_ARCH= yes .include diff --git a/finance/py-Nasdaq-Data-Link/Makefile b/finance/py-Nasdaq-Data-Link/Makefile index ff722908be11..68cf85b4248d 100644 --- a/finance/py-Nasdaq-Data-Link/Makefile +++ b/finance/py-Nasdaq-Data-Link/Makefile @@ -1,38 +1,38 @@ PORTNAME= Nasdaq-Data-Link DISTVERSION= 1.0.4 PORTREVISION= 4 CATEGORIES= finance PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for Nasdaq Data Link API access WWW= https://github.com/Nasdaq/data-link-python LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}inflection>=0.3.1:devel/py-inflection@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}more-itertools>0:devel/py-more-itertools@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.14:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.7.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}httpretty>0:www/py-httpretty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}factory-boy>0:devel/py-factory-boy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nose>=0:devel/py-nose@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-flake8>0:devel/py-pytest-flake8@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent distutils pytest # tests are broken, see https://github.com/Nasdaq/data-link-python/issues/24 USE_GITHUB= yes GH_ACCOUNT= Nasdaq GH_PROJECT= data-link-python NO_ARCH= yes .include diff --git a/finance/py-exchange-calendars/Makefile b/finance/py-exchange-calendars/Makefile index 170e65504bc1..1d0e2ce208f3 100644 --- a/finance/py-exchange-calendars/Makefile +++ b/finance/py-exchange-calendars/Makefile @@ -1,35 +1,35 @@ PORTNAME= exchange-calendars DISTVERSION= 4.9 PORTREVISION= 1 CATEGORIES= finance python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Calendars for securities exchanges WWW= https://github.com/gerrymanoim/exchange_calendars LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}korean-lunar-calendar>0:korean/py-korean-lunar-calendar@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyluach>0:hebrew/py-pyluach@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}toolz>0:devel/py-toolz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tzdata>0:devel/py-tzdata@${PY_FLAVOR} BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests as of 4.9: 8330 passed, 1 xfailed in 4621.81s (1:17:01) .include diff --git a/finance/py-ffn/Makefile b/finance/py-ffn/Makefile index 132fb2bec355..90887c4beeee 100644 --- a/finance/py-ffn/Makefile +++ b/finance/py-ffn/Makefile @@ -1,41 +1,41 @@ PORTNAME= ffn DISTVERSIONPREFIX= v DISTVERSION= 1.1.3 PORTREVISION= 1 CATEGORIES= finance python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Financial functions for Python WWW= http://pmorissette.github.io/ffn/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}decorator>=5.0.7:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.15:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas-datareader>=0.2:math/py-pandas-datareader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.19:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.15:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.15:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>=0.7.5:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yfinance>=0.2:finance/py-yfinance@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}seaborn>=0:math/py-seaborn@${PY_FLAVOR} # optional dependency USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= pmorissette NO_ARCH= yes # tests as of 1.1.2: 54 passed, 6 warnings in 495.57s (0:08:15) .include diff --git a/finance/py-investpy/Makefile b/finance/py-investpy/Makefile index b96871ee8e04..6513264f2ecf 100644 --- a/finance/py-investpy/Makefile +++ b/finance/py-investpy/Makefile @@ -1,29 +1,29 @@ PORTNAME= investpy PORTVERSION= 1.0.8 PORTREVISION= 5 CATEGORIES= finance python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Financial Data Extraction from Investing.com with Python WWW= https://investpy.readthedocs.io/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.25.1:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2019.3:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.22.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}unidecode>=1.1.1:converters/py-unidecode@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/finance/py-pandas-ta/Makefile b/finance/py-pandas-ta/Makefile index 3f9bd35e0787..180b7d43becc 100644 --- a/finance/py-pandas-ta/Makefile +++ b/finance/py-pandas-ta/Makefile @@ -1,33 +1,33 @@ PORTNAME= pandas-ta DISTVERSION= 0.3.14 PORTREVISION= 5 CATEGORIES= finance python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Market Technical Analysis indicators in Python and Pandas WWW= https://twopirllc.github.io/pandas-ta/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.2.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2021.1:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.16.0:devel/py-six@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ta-lib>0:finance/py-ta-lib@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # 1 test fails, see https://github.com/twopirllc/pandas-ta/issues/631 USE_GITHUB= yes GH_ACCOUNT= twopirllc NO_ARCH= yes .include diff --git a/finance/py-ta-lib/Makefile b/finance/py-ta-lib/Makefile index 63fd0d0c8fb6..e4c3bc26ad01 100644 --- a/finance/py-ta-lib/Makefile +++ b/finance/py-ta-lib/Makefile @@ -1,37 +1,37 @@ PORTNAME= ta-lib # provides Python namespace 'talib' DISTVERSIONPREFIX= TA_Lib- DISTVERSION= 0.4.32 PORTREVISION= 2 CATEGORIES= finance python #MASTER_SITES= PYPI # tests fail whe PYPI is used, see https://github.com/TA-Lib/ta-lib-python/issues/663 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= TA-Lib-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python wrapper for TA-Lib (Technical Analysis Library) WWW= https://ta-lib.github.io/ta-lib-python/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libta_lib.so:devel/ta-lib -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}polars>0:misc/py-polars@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist pytest USE_GITHUB= yes GH_ACCOUNT= TA-Lib GH_PROJECT= ta-lib-python xWRKSRC= ${WRKDIR}/ta_lib-${DISTVERSION} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/talib/_ta_lib${PYTHON_TAG}.so .include diff --git a/french/aster/Makefile b/french/aster/Makefile index 50d7f65af01e..05fe9a0ee54f 100644 --- a/french/aster/Makefile +++ b/french/aster/Makefile @@ -1,432 +1,432 @@ PORTNAME= aster DISTVERSION= ${ASTER_DISTVERSION} PORTREVISION= 13 CATEGORIES= french cad MAINTAINER= thierry@FreeBSD.org COMMENT= Code_Aster finite element method solver WWW= http://www.code-aster.org/ LICENSE= GPLv2 NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc NOT_FOR_ARCHS_REASON= ARG_MAX is too small for Code_Aster on 32 bits systems BROKEN= fails to build the catalog of elements #----------------------------------------------------------------------- # You may define these options: # # - WITH_ZSH or WITH_BASH or WITH_KSH: select a shell among # zsh (default), bash or ksh; # - WITH_ED: select an editor accepting '-display' (e.g. gvim, nedit); # - WITHOUT_ASTK_CLI: won't use the GUI from this machine; # - WITHOUT_GMSH: don't install GMSH (a mesh generator); # - WITHOUT_GRACE: don't install Grace (used to create 2D graph); # - WITH_MUMPS: install the interface between Code_Aster and MUMPS (experimental) # #----------------------------------------------------------------------- BUILD_DEPENDS+= astk-serveur>0:cad/astk-serveur \ ${SHELL_INSTALL_ASTER}:shells/${SHIADEP} \ gnproc:sysutils/coreutils \ bash:shells/bash \ getopt>=0:misc/getopt \ xterm:x11/xterm \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} # pylupdate5:textproc/py-qt5-xml LIB_DEPENDS+= libhdf5-110.so:science/hdf5-110 \ libscotch.so:cad/scotch \ libmetis.so:math/metis \ libmed.so:french/med \ libAsterInterface.so:science/tfel-edf RUN_DEPENDS+= ${SHELL_INSTALL_ASTER}:shells/${SHIADEP} \ astk-serveur>0:cad/astk-serveur \ xterm:x11/xterm \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} USES= bison blaslapack:openblas fortran gettext python qt:5 tk USE_BINUTILS= yes USE_QT= linguisttools:build #CONFLICTS_BUILD=${PYTHON_PKGNAMEPREFIX}cysignals-1.* HAS_CONFIGURE= yes CFLAGS+= -I${LOCALBASE}/include/hdf5-110 MAKE_ENV= INCLUDES="${LOCALBASE}/include" \ INCLUDEDIR="${LOCALBASE}/include" \ LD_PRELOAD="${LOCALBASE}/lib/gcc${_GCC_VER}/libgcc_s.so.1" \ PYTHONPATH="${PYTHON_SITELIBDIR}:${LOCALBASE}/aster/ASTK/ASTK_SERV" \ PYTHONIOENCODING="utf-8" LANG=C LC_ALL="en_US.UTF-8" \ LINKFLAGS="${LDFLAGS}" LD_LIBRARY_PATH="${LOCALBASE}/lib/gcc${_GCC_VER}" REINPLACE_ARGS= -i "" BINARY_ALIAS= python=${PYTHON_CMD} VER= ${PORTVERSION:R} VE= ${VER:R} WRKSRC= ${WRKDIR}/${PORTNAME}-full-src-${VER} PLIST_SUB= VE=${VE} .if defined(WITHOUT_ASTK_CLI) SUB_FILES= pkg-message.sans-astk .else SUB_FILES= pkg-message .endif SUB_LIST= tools_dir=${tools_dir} INTERACTIVE_SCRIPTS= check_compilers.py setup.py .include "${.CURDIR}/../../french/aster/bsd.aster.mk" .include .if ${ARCH} == "i386" FLAGARCH= -DP_LINUX -DLINUX .else FLAGARCH= -DLINUX64 .endif .if defined(WITH_DEBUG) DEBUG_FLAGS= --debug CFLAGS+= -D__DEBUG_ALLOCATE__ FFLAGS+= -D__DEBUG_ALLOCATE__ MAKE_ENV+= FCFLAGS="-g ${FFLAGS:C|O2|O0|} -fno-tree-dse ${FLAGARCH}" .else MAKE_ENV+= FCFLAGS="${FFLAGS} -fno-tree-dse ${FLAGARCH}" .endif .if !defined(WITHOUT_ASTK_CLI) RUN_DEPENDS+= astk-client>0:cad/astk-client PLIST_SUB+= ASTK_CLIENT="" ASTKDIR=${ASTKDIR} .else PLIST_SUB+= ASTK_CLIENT="@comment " ASTKDIR="" .endif .if !defined(WITHOUT_GMSH) RUN_DEPENDS+= ${LOCALBASE}/bin/gmsh:cad/gmsh PLIST_SUB+= GMSH="" .else PLIST_SUB+= GMSH="@comment " .endif .if !defined(WITHOUT_GRACE) RUN_DEPENDS+= xmgrace:math/grace PLIST_SUB+= GRACE="" .else PLIST_SUB+= GRACE="@comment " .endif .if defined(WITH_BOOST) LIB_DEPENDS+= ${PY_BOOST} .endif .if !defined(WITH_MPI) MPISEQ= -lmpiseq MUMPSLIB= -L${LOCALBASE}/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord ${MPISEQ} LIB_DEPENDS+= libmpiseq.so.5:math/mumps .else BUILD_DEPENDS+= ${LOCALBASE}/lib/libscalapack.a:math/scalapack MUMPSLIB= -L${LOCALBASE}/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack -lexecinfo -L${LOCALBASE}/lib -lmpi LIB_DEPENDS+= libcmumps.so.5:math/mumps .endif .if defined(WITH_MPI) LIB_DEPENDS+= libmpi.so:net/mpich HOME_MPI= ${LOCALBASE} .endif .if defined(WITH_ZSH) SHIA= zsh .elif defined(WITH_BASH) SHIA= bash .elif defined(WITH_KSH) SHIA= ksh93 .elif exists(${LOCALBASE}/bin/zsh) SHIA= zsh .elif exists(${LOCALBASE}/bin/bash) SHIA= bash .elif exists(${LOCALBASE}/bin/ksh93) SHIA= ksh93 .else SHIA= zsh .endif SHIADEP= ${SHIA} .if !defined(WITH_ED) . if exists(${LOCALBASE}/bin/nedit) WITH_ED= nedit RUN_DEPENDS+= ${LOCALBASE}/bin/nedit:editors/nedit . elif exists(${LOCALBASE}/bin/gvim) WITH_ED= gvim RUN_DEPENDS+= ${LOCALBASE}/bin/gvim:editors/vim . elif exists(${LOCALBASE}/bin/emacs) WITH_ED= emacs RUN_DEPENDS+= ${LOCALBASE}/bin/emacs:editors/emacs . elif exists(${LOCALBASE}/bin/gedit) WITH_ED= gedit RUN_DEPENDS+= ${LOCALBASE}/bin/gedit:editors/gedit . elif exists(${LOCALBASE}/bin/xedit) WITH_ED= xedit RUN_DEPENDS+= ${LOCALBASE}/bin/xedit:x11/xedit . else WITH_ED= vi . endif .endif INST_DAT= elements INST_SH= as_run parallel_cp PFX2FIX= bin/as_run etc/codeaster/aster etc/codeaster/profile.sh \ ${VE}/aster.conf ${VE}/lib/aster/aster_pkginfo.py \ ${VE}/share/aster/CTestTestfile.cmake \ ${VE}/include/aster/asterf_config.h \ ${VE}/include/aster/asterc_config.h \ ${VE}/share/aster/execute_codeaster \ ${VE}/share/aster/config.txt ${VE}/share/aster/profile.sh POSTPY2FIX= post-patch-waf.engine post-patch-data__post_install POSTBASH2FIX= execute_codeaster create_install_script inst_dir= ${PREFIX}/${PORTNAME} tools_dir= ${PREFIX}/${PORTNAME}/outils tools= cmpfillin gpmetis graphchk m2gmetis mpmetis ndmetis gnuplot .if !defined(WITHOUT_GMSH) tools+= gmsh .endif .if !defined(WITHOUT_GRACE) tools+= gracebat xmgrace .endif v_ifdef= ${OPSYS:tu} SHELL_INSTALL_ASTER= ${LOCALBASE}/bin/${SHIA} tcl_dir= ${LOCALBASE} hdf_dir= ${LOCALBASE} lib_math= "-L${LOCALBASE}/lib ${BLASLIB} ${LAPACKLIB} -lscotch -lscotcherr" LASTKDIR?= ${PORTNAME}/ASTK/ASTK_CLIENT ASTKDIR= ${LOCALBASE}/${LASTKDIR} BASH2RC= products_data.py ExportPATH?= /tmp/maillages pre-configure: ${REINPLACE_CMD} -e 's|PREFER_SHARED_LIBS=False|PREFER_SHARED_LIBS=True|' \ -e 's|/opt/aster|${STAGEDIR}${inst_dir}|' ${WRKSRC}/setup.cfg ${REINPLACE_CMD} -e 's|?ASTER_ROOT?|${STAGEDIR}${inst_dir}|' \ ${WRKSRC}/products.py ${REINPLACE_CMD} -e "s|'gfortran'|'${FC}'|g;s|'gcc'|'${CC}'|g" \ -e "s|'g++'|'${CXX}'|g" ${WRKSRC}/check_compilers.py ${REINPLACE_CMD} -e "s|%%LOCALBASE%%|${LOCALBASE}|" \ -e "s|%%PYTHON_CMD%%|${PYTHON_CMD}|" \ -e "s|%%WRKDIR%%|${WRKDIR}|" ${WRKSRC}/as_setup.py .for sh in ${BASH2RC} ${REINPLACE_CMD} -e 's|/bin/bash|${SHELL_INSTALL_ASTER}|' ${WRKSRC}/${sh} .endfor ${REINPLACE_CMD} -e 's|%%PYTHON_ABIVER%%|${PYTHON_ABIVER}|' ${WRKSRC}/setup.py ${ECHO_CMD} "_install_hdf5 = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_med = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_tcl = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_tk = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_Pmw = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_Numeric = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_gmsh = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_gmsh2 = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_gibi = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_grace = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "XMGRACE = 'xmgrace'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_homard = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_eficas = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_astk = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_astk_serv = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_metis = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_mfront = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_mumps = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_omniORB = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_omniORBpy = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_pylotage = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_crpcrs = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_aster_Linux = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "_install_scotch = False" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "OPT_ENV = 'verbose=True'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "PYTHONPATH = '${PYTHON_SITELIBDIR}:${LOCALBASE}/aster/ASTK/ASTK_SERV'"\ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "PYTHON_INCLUDE = '${PYTHON_INCLUDEDIR}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_PYTHON = '${PYTHONBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "PYTHON_EXE = '${PYTHON_CMD}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_SCOTCH = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_METIS = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_GMSH = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_GIBI = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_HOMARD = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "INCLUDEDIR = ['${LOCALBASE}/include/hdf5-110', '${LOCALBASE}/include', '${LOCALBASE}/include/metis', ]"\ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_MUMPS = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_MFRONT = '${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "MUMPSLIB = '${MUMPSLIB}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CC='${CC}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "gcc='${CC}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CXX='${CXX}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "LD='${FC}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "F90='${FC}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "MATHLIB='${lib_math} ${LDFLAGS} -lgfortran -lm -lkvm'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "OTHERLIB='-Xlinker -export-dynamic ${MPISEQ} -lc++ -lexecinfo -lutil -lpthread -lz'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "SYSLIB='-lpthread -lz'" >> ${WRKSRC}/setup.cfg .if defined(WITH_MPI) ${ECHO_CMD} "HOME_MPI = '${HOME_MPI}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "MPIRUN = 'mpirun'" >> ${WRKSRC}/setup.cfg .else ${ECHO_CMD} "HOME_MPI = ''" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "MPIRUN = ''" >> ${WRKSRC}/setup.cfg .endif ${ECHO_CMD} "HOME_ZMAT = ''" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_HDF='${hdf_dir}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_MED='${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "HOME_TCL_TK='${tcl_dir}'" >> ${WRKSRC}/setup.cfg .if defined(WITH_BOOST) ${ECHO_CMD} "HOME_BOOST='${LOCALBASE}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "LIBPATH_BOOST='${LOCALBASE}/lib'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "LIBNAME_BOOST='${PY_BOOST_LIB}'" >> ${WRKSRC}/setup.cfg .endif ${ECHO_CMD} "BLASLIB='${_BLASLIB}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "LAPACKLIB='lapack'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "GZIP='/usr/bin/gzip'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "SHELL_EXECUTION='${SHELL_INSTALL_ASTER}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "TERMINAL='xterm'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "EDITOR='${WITH_ED}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CXXFLAGS='${CXXFLAGS}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CXXFLAGS_DBG='${CXXFLAGS:C|-O2|--debug|}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "LDFLAGS='${LDFLAGS}'" >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "FFLAGS='-c ${FFLAGS} -fno-tree-dse ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "FFLAGS_DBG='-c -g ${FFLAGS:C|O2|O0|} -fno-tree-dse ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg .if defined(WITH_MPI) ${ECHO_CMD} "F90FLAGS='-c ${FFLAGS} -fno-tree-dse ${FLAGARCH} -I${HOME_MPI}/include'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "F90FLAGS_DBG='-c -g ${FFLAGS:C|O2|O0|} -fno-tree-dse ${FLAGARCH} -I${HOME_MPI}/include'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CFLAGS='-c ${CFLAGS} ${FLAGARCH} -I${HOME_MPI}/include'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CFLAGS_DBG='-c -g -O -pipe ${FLAGARCH} -I${HOME_MPI}/include'" \ >> ${WRKSRC}/setup.cfg .else ${ECHO_CMD} "F90FLAGS='-c ${FFLAGS} -fno-tree-dse ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "F90FLAGS_DBG='-c -g ${FFLAGS:C|O2|O0|} -fno-tree-dse ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CFLAGS='-c ${CFLAGS} ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg ${ECHO_CMD} "CFLAGS_DBG='-c -g -O -pipe ${FLAGARCH}'" \ >> ${WRKSRC}/setup.cfg .endif .for is in ${INTERACTIVE_SCRIPTS} ${REINPLACE_CMD} -e '/should_continue()/d' \ ${WRKSRC}/${is} .endfor ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${WRKSRC} @${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${WRKSRC} do-configure: (cd ${CONFIGURE_WRKSRC} \ && TMPDIR=${WRKDIR} ${MAKE_ENV} ${PYTHON_CMD} setup.py ${DEBUG_FLAGS} \ --prefix=${STAGEDIR}${inst_dir} test | tee ${CONFIGURE_LOG}) @${ECHO_MSG} "---------------- Debug ------------------" ${CAT} ${CONFIGURE_WRKSRC}/setup.log @${ECHO_MSG} "------------ Fin debug ------------------" post-configure: ${MKDIR} ${STAGEDIR}${inst_dir}/etc ${CP} -R ${LOCALBASE}/aster/etc/codeaster ${STAGEDIR}${inst_dir}/etc/ ${ECHO_CMD} "#?vers : VVV?" >> ${STAGEDIR}${inst_dir}/etc/codeaster/aster ${CP} -R ${LOCALBASE}/aster/ASTK/ASTK_SERV/bin \ ${LOCALBASE}/aster/ASTK/ASTK_SERV/asrun \ ${LOCALBASE}/aster/ASTK/ASTK_SERV/share \ ${STAGEDIR}${inst_dir} ${REINPLACE_CMD} -e 's|${LOCALBASE}/aster|${STAGEDIR}${inst_dir}|' \ ${STAGEDIR}${inst_dir}/bin/as_run ${MV} ${STAGEDIR}${inst_dir}/etc/codeaster/profile_astk.sh \ ${STAGEDIR}${inst_dir}/etc/codeaster/profile.sh .for sf in etc/codeaster/profile.sh asrun/installation.py ${REINPLACE_CMD} -e 's|${LOCALBASE}/aster/ASTK/ASTK_SERV|${STAGEDIR}${inst_dir}|g' \ -e 's|${LOCALBASE}/aster|${STAGEDIR}${inst_dir}|g' \ ${STAGEDIR}${inst_dir}/${sf} .endfor pre-build: ${MKDIR} ${WRKDIR}/post_patches ${CP} ${FILESDIR}/post-patch-* ${WRKDIR}/post_patches/ .for pp in ${POSTPY2FIX} ${REINPLACE_CMD} -e 's|%%PYTHON_CMD%%|${PYTHON_CMD}|' ${WRKDIR}/post_patches/${pp} .endfor do-build: (cd ${BUILD_WRKSRC} && \ TMPDIR=${WRKDIR} ${MAKE_ENV} ${PYTHON_CMD} setup.py ${DEBUG_FLAGS} install aster \ --prefix=${STAGEDIR}${inst_dir} | tee ${BUILD_WRKSRC}/build.log) do-install: # build: already did the installation @${DO_NADA} post-install: .for f in ${PFX2FIX} ${REINPLACE_CMD} -e 's|${STAGEDIR}||g' ${STAGEDIR}${inst_dir}/${f} .endfor .for f in ${POSTBASH2FIX} ${REINPLACE_CMD} -e 's|/bin/bash|${LOCALBASE}/bin/bash|' \ ${STAGEDIR}${inst_dir}/${VE}/share/aster/${f} .endfor ${REINPLACE_CMD} -e 's|LINUX64|LINUX64, FREEBSD|' \ ${STAGEDIR}${inst_dir}/asrun/core/default_configuration.py (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${inst_dir:S|${PREFIX}/||}) (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${inst_dir:S|${PREFIX}/||}) ${CP} -p ${STAGEDIR}${inst_dir}/${VE}/bin/aster \ ${STAGEDIR}${inst_dir}/${VE}/bin/asterd ${STRIP_CMD} ${STAGEDIR}${inst_dir}/${VE}/bin/aster ${SED} -e 's|%%VER%%|${VE}|' < ${FILESDIR}/astout.export \ > ${STAGEDIR}${inst_dir}/${VE}/astout.export (cd ${STAGEDIR}${inst_dir} && \ ${LN} -fs ${VE} ${STAGEDIR}${inst_dir}/STA${VE}) .for conf in config.txt profile.sh (cd ${STAGEDIR} && ${LN} -fs ${inst_dir}/${VE}/share/aster/${conf} \ ${STAGEDIR}${inst_dir}/STA${VE}/${conf}) .endfor ${MKDIR} ${STAGEDIR}${tools_dir} .for outil in ${tools} ${LN} -fs ${LOCALBASE}/bin/${outil} ${STAGEDIR}${tools_dir}/${outil} .endfor .if !defined(WITHOUT_ASTK_CLI) ${MKDIR} ${STAGEDIR}${PREFIX}/aster/ASTK/ASTK_SERV/etc/codeaster/astkrc ${LN} -fs ${ASTKDIR}/etc/astkrc/* \ ${STAGEDIR}${PREFIX}/aster/ASTK/ASTK_SERV/etc/codeaster/astkrc . for outil in astk bsf ${LN} -fs ${ASTKDIR}/bin/${outil} ${STAGEDIR}${tools_dir}/${outil} . endfor .endif ${MKDIR} ${WRKDIR}/AvoidConflictWithASTK .for f in aster.install_${VE} profile.sh ${MV} ${STAGEDIR}${inst_dir}/etc/codeaster/${f} ${WRKDIR}/AvoidConflictWithASTK/ .endfor ${RM} -r ${STAGEDIR}${inst_dir}/etc/codeaster/* .for f in aster.install_${VE} profile.sh ${MV} ${WRKDIR}/AvoidConflictWithASTK/${f} ${STAGEDIR}${inst_dir}/etc/codeaster/ .endfor .for f in aster_pkginfo.cpython-${PYTHON_SUFFIX}.pyc aster_pkginfo.cpython-${PYTHON_SUFFIX}.opt-1.pyc ${RM} ${STAGEDIR}${inst_dir}/${VE}/lib/aster/__pycache__/${f} .endfor ${FIND} ${STAGEDIR}${PREFIX} -name "*.bak" -delete .if defined(MAINTAINER_MODE) regression-test: install @${ECHO_MSG} "Note: homard must be installed to run some steps succesfully." ${MKDIR} ${ExportPATH} ${CP} ${inst_dir}/${VE}/astout.export /tmp/ (cd ${inst_dir}/${VE} && \ ${LOCALBASE}/aster/bin/as_run --list --all --vers=${VE} \ --filter='"I" not in testlist' -o /tmp/list_seq ) (cd /tmp && \ ${LOCALBASE}/aster/bin/as_run astout.export) || ${TRUE} @${ECHO_MSG} "Check /tmp/resu_test/NOOK" .endif .include diff --git a/games/endgame-singularity/Makefile b/games/endgame-singularity/Makefile index 475fc8e84bce..109c211051e7 100644 --- a/games/endgame-singularity/Makefile +++ b/games/endgame-singularity/Makefile @@ -1,58 +1,58 @@ PORTNAME= singularity PORTVERSION= 1.00 PORTREVISION= 5 CATEGORIES= games MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/v${PORTVERSION}/ PKGNAMEPREFIX= endgame- MAINTAINER= cyberbotx@cyberbotx.com COMMENT= Simulates the life of a true AI WWW= http://emhsoft.com/singularity/ LICENSE= GPLv2+ MIT CC-BY-SA-3.0 NASA AEFONTS BITSTREAM AREV \ MEMESBRUH03 CC0-1.0 LICENSE_COMB= multi LICENSE_NAME_NASA= NASA Terms of Use LICENSE_NAME_AEFONTS= Brian Kent - Aenigma Games & Fonts LICENSE_NAME_BITSTREAM= Bitstream Vera Fonts Copyright LICENSE_NAME_AREV= Arev Fonts Copyright LICENSE_NAME_MEMESBRUH03= memesbruh03 Copyright LICENSE_FILE= ${WRKSRC}/LICENSE.txt LICENSE_FILE_GPLv2+ = ${WRKSRC}/LICENSE.gpl.txt LICENSE_FILE_CC-BY-SA-3.0= ${WRKSRC}/LICENSE.CC-BY-SA-3.txt LICENSE_FILE_CC0-1.0= ${WRKSRC}/LICENSE.cc0.txt LICENSE_PERMS_NASA= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LICENSE_PERMS_AEFONTS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LICENSE_PERMS_BITSTREAM=dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LICENSE_PERMS_AREV= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LICENSE_PERMS_MEMESBRUH03= dist-mirror dist-sell pkg-mirror pkg-sell \ auto-accept RUN_DEPENDS= ${PYGAME} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}polib>=0:devel/py-polib@${PY_FLAVOR} USES= python sdl shebangfix USE_PYTHON= autoplist distutils USE_SDL= image mixer PORTDOCS= AUTHORS.txt Changelog.txt README.txt TODO NO_ARCH= yes SHEBANG_FILES= singularity/i18n/utils/languages.py OPTIONS_DEFINE= MUSIC DOCS OPTIONS_DEFAULT= MUSIC MUSIC_DESC= Install original music pack MUSIC_RUN_DEPENDS= endgame-singularity-music>=006:games/endgame-singularity-music post-extract: @${MV} ${WRKSRC}/singularity/data ${WRKSRC}/ post-install: @${MKDIR} ${STAGEDIR}${DATADIR}/data (cd ${WRKSRC}/data && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}/data) ${INSTALL_DATA} ${WRKSRC}/singularity.desktop ${STAGEDIR}${PREFIX}/share/applications @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC} && ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}) .include diff --git a/games/fretsonfire/Makefile b/games/fretsonfire/Makefile index c67312147937..9d3213dbe7e4 100644 --- a/games/fretsonfire/Makefile +++ b/games/fretsonfire/Makefile @@ -1,54 +1,54 @@ PORTNAME= fretsonfire PORTVERSION= 1.3.110 PORTREVISION= 18 CATEGORIES= games python MASTER_SITES= SF DISTNAME= ${PORTNAME_UCASE}-${PORTVERSION} DIST_SUBDIR= ${PORTNAME} MAINTAINER= acm@FreeBSD.org COMMENT= Game of musical skill and fast fingers WWW= http://fretsonfire.sf.net LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/copying.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYGAME} \ ${PYTHON_PKGNAMEPREFIX}pillow>=7.0.0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>=0:graphics/py-PyOpenGL@${PY_FLAVOR} \ ${LOCALBASE}/share/${PORTNAME}/default.ttf:games/fretsonfire-data USES= dos2unix python DOS2UNIX_FILES= *.txt NO_BUILD= yes NO_ARCH= yes DATADIR= share/${PORTNAME} EXTRACT_AFTER_ARGS= --exclude 'data' SUB_FILES= pkg-message FretsOnFire SUB_LIST= PROGRAM_DIR="${FOF_DIR}/${PORTNAME_UCASE}" WRKSRC= "${WRKDIR}/Frets on Fire-${PORTVERSION}" FOF_DIR= ${PREFIX}/lib/${PORTNAME} OPTIONS_DEFINE= DOCS PORTNAME_UCASE= FretsOnFire do-install: @${MKDIR} ${STAGEDIR}${FOF_DIR}/${PORTNAME_UCASE} @cd ${WRKSRC}/src && \ ${FIND} * -type d -exec ${MKDIR} "${STAGEDIR}${FOF_DIR}/${PORTNAME_UCASE}/{}" \; && \ ${FIND} -E * -type f -iregex ".*\.(py)" -exec ${INSTALL_DATA} {} "${STAGEDIR}${FOF_DIR}/${PORTNAME_UCASE}/{}" \; @${MKDIR} ${STAGEDIR}${FOF_DIR}/data @${LN} -s ${LOCALBASE}/${DATADIR}/* ${STAGEDIR}${FOF_DIR}/data ${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME_UCASE} ${STAGEDIR}${PREFIX}/bin @${REINPLACE_CMD} -i '' -e 's|#!.*|#!${PYTHON_CMD}|' ${STAGEDIR}${PREFIX}/bin/${PORTNAME_UCASE} @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/readme.txt ${STAGEDIR}${DOCSDIR}/README ${INSTALL_DATA} ${WRKSRC}/install.txt ${STAGEDIR}${DOCSDIR}/INSTALL .include diff --git a/games/krank/Makefile b/games/krank/Makefile index be2d657ee9c4..eb20d360361a 100644 --- a/games/krank/Makefile +++ b/games/krank/Makefile @@ -1,46 +1,46 @@ PORTNAME= krank PORTVERSION= 07 PORTREVISION= 13 CATEGORIES= games MASTER_SITES= SF MAINTAINER= ports@FreeBSD.org COMMENT= Little casual game WWW= https://krank.sourceforge.net/ RUN_DEPENDS= ${PYGAME} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python:run tar:bzip2 NO_BUILD= yes NO_ARCH= yes PORTDOCS= CHANGELOG.txt README DESKTOP_ENTRIES="Krank" "" "${PORTNAME}" \ "${PORTNAME}" "Game;ArcadeGame;" "" OPTIONS_DEFINE= DOCS post-extract: @${FIND} ${WRKSRC} -name .cvsignore -delete -or -name .DS_Store -delete post-patch: @${REINPLACE_CMD} -e 's|`dirname.*|${DATADIR}|' ${WRKSRC}/${PORTNAME} do-install: ${INSTALL_SCRIPT} ${WRKSRC}/${PORTNAME} ${STAGEDIR}${PREFIX}/bin/ .for d in art fonts html levels sounds src @(cd ${WRKSRC} && ${COPYTREE_SHARE} ${d} ${STAGEDIR}${DATADIR}) .endfor ${INSTALL_DATA} ${WRKSRC}/${PORTNAME}.iss ${STAGEDIR}${DATADIR} ${INSTALL_DATA} ${WRKSRC}/logo.xcf ${STAGEDIR}${DATADIR} ${LN} -sf ${DATADIR}/html/gfx/logo.png \ ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .include diff --git a/games/openage/Makefile b/games/openage/Makefile index 492af265256c..d30fb98a5279 100644 --- a/games/openage/Makefile +++ b/games/openage/Makefile @@ -1,65 +1,65 @@ PORTNAME= openage DISTVERSIONPREFIX= v DISTVERSION= 0.6.0 PORTREVISION= 2 CATEGORIES= games MAINTAINER= freebsd@sysctl.cz COMMENT= Free engine clone of the Genie Engine WWW= https://openage.sft.mx/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/legal/GPLv3 BROKEN_armv7= error: non-constant-expression cannot be narrowed from type \ 'long long' to 'unsigned int' in initializer list BROKEN_i386= error: non-constant-expression cannot be narrowed from type \ 'long long' to 'unsigned int' in initializer list -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>=0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}toml>=0:textproc/py-toml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lz4>=0:archivers/py-lz4@${PY_FLAVOR} \ doxygen:devel/doxygen \ ${LOCALBASE}/include/toml.hpp:devel/toml11 LIB_DEPENDS= libepoxy.so:graphics/libepoxy \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libharfbuzz.so:print/harfbuzz \ libogg.so:audio/libogg \ libopus.so:audio/opus \ libopusfile.so:audio/opusfile \ libpng.so:graphics/png \ libnyan.so:lang/nyan -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} USES= cmake compiler:c++17-lang eigen:3 gl ncurses:port python qt:6 sdl shebangfix SHEBANG_FILES= configure run.py.in buildsystem/cythonize.py USE_GITHUB= yes GH_ACCOUNT= SFTtech USE_SDL= image2 sdl2 USE_GL= gl glu USE_QT= base multimedia tools:build USE_PYTHON= cython USE_LDCONFIG= yes CMAKE_OFF= WANT_BACKTRACE WANT_GPERFTOOLS_PROFILER WANT_INOTIFY USE_LD_GOLD CMAKE_ARGS= -DGLOBAL_CONFIG_DIR:STRING=${ETCDIR} BINARY_ALIAS= python3=${PYTHON_CMD} post-patch: @${REINPLACE_CMD} -e '/^#include / { x; s/^/#include /; H; x; }' \ ${WRKSRC}/libopenage/renderer/vulkan/render_target.h post-install: @${MKDIR} ${STAGEDIR}${PREFIX}/etc/openage @${MKDIR} ${STAGEDIR}${PREFIX}/etc/xdg .include diff --git a/graphics/blender/Makefile b/graphics/blender/Makefile index f0be3c9fa226..e43feb7cd08b 100644 --- a/graphics/blender/Makefile +++ b/graphics/blender/Makefile @@ -1,226 +1,226 @@ PORTNAME= blender DISTVERSION= 5.0.1 PORTREVISION= 2 CATEGORIES= graphics multimedia MASTER_SITES= http://download.blender.org/source/ \ http://mirror.cs.umn.edu/blender.org/source/ \ http://public.planetmirror.com/pub/blender/source/ MAINTAINER= FreeBSD@Shaneware.biz COMMENT= 3D modeling/rendering/animation package WWW= https://www.blender.org/ LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/doc/license/GPL3-license.txt ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le riscv64 ONLY_FOR_ARCHS_REASON= static_assert(sizeof(unsigned long long) == sizeof(struct hipArray*)) -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libfreetype.so:print/freetype2 \ libepoxy.so:graphics/libepoxy \ libOpenImageIO.so:graphics/openimageio \ libpng.so:graphics/png \ libsamplerate.so:audio/libsamplerate \ libtiff.so:graphics/tiff \ libzstd.so:archivers/zstd -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:noninja compiler:c++17-lang cpe eigen:3 jpeg llvm:build,run \ pkgconfig python:3.11 shebangfix tar:xz xorg USE_XORG= x11 xext xfixes xmu xrender SHEBANG_FILES= scripts/modules/blend_render_info.py CMAKE_ARGS= -DCMAKE_CXX_STANDARD:INTEGER=17 \ -DLLVM_CONFIG:STRING="${LOCALBASE}/bin/llvm-config${LLVM_VERSION}" \ -DCMAKE_POLICY_DEFAULT_CMP0167=NEW .if defined(WITH_DEBUG) CMAKE_ARGS+= -DWITH_GHOST_DEBUG:BOOL=ON .endif CMAKE_ON= WITH_AUDASPACE WITH_BOOST WITH_CLANG WITH_GHOST_X11 WITH_GHOST_XDND \ WITH_HYDRA WITH_IO_PLY WITH_IO_STL WITH_IO_WAVEFRONT_OBJ \ WITH_LLVM WITH_OPENGL_BACKEND WITH_PYTHON WITH_SYSTEM_EIGEN3 \ WITH_SYSTEM_FREETYPE WITH_X11_XINPUT WITH_X11_XFIXES CMAKE_OFF= WITH_GHOST_SDL WITH_INSTALL_PORTABLE WITH_LIBS_PRECOMPILED \ LLVM_STATIC WITH_MEM_JEMALLOC WITH_MEM_VALGRIND \ WITH_NANOVDB WITH_PYTHON_INSTALL WITH_PYTHON_INSTALL_NUMPY CFLAGS+= ${CFLAGS_${CHOSEN_COMPILER_TYPE}} CFLAGS_gcc= -Wno-float-conversion CXXFLAGS+= -DGLOG_USE_GLOG_EXPORT LDFLAGS+= -lexecinfo -Wl,--undefined-version SUB_FILES= blender PLIST_SUB+= VER=${DISTVERSION:R} OPTIONS_SUB= yes .include "${.CURDIR}/Makefile.options" ALEMBIC_CMAKE_BOOL= WITH_ALEMBIC ALEMBIC_IMPLIES= OPENEXR ALEMBIC_LIB_DEPENDS= libAlembic.so:graphics/alembic BULLET_CMAKE_BOOL= WITH_BULLET CAMERATRACK_CMAKE_BOOL= WITH_LIBMV WITH_SYSTEM_GLOG CAMERATRACK_LIB_DEPENDS= libglog.so:devel/glog CINEON_CMAKE_BOOL= WITH_IMAGE_CINEON CYCLES_CMAKE_BOOL= WITH_CYCLES CYCLES_IMPLIES= TBB CYCLES_LDFLAGS= -L${LOCALBASE}/lib -lgflags CYCLES_LIB_DEPENDS= libgflags.so:devel/gflags CYCLES_EMBR_CMAKE_BOOL= WITH_CYCLES_EMBREE CYCLES_EMBR_IMPLIES= CYCLES CYCLES_EMBR_LIB_DEPENDS= libembree4.so:graphics/embree CYCLES_ONEAPI_CMAKE_BOOL= WITH_CYCLES_DEVICE_ONEAPI CYCLES_ONEAPI_LIB_DEPENDS= libtbb.so:devel/onetbb CYCLES_OSL_CMAKE_BOOL= WITH_CYCLES_OSL CYCLES_OSL_CMAKE_ON= -DOSL_SHADER_DIR:STRING="${LOCALBASE}/share/openshadinglanguage/shaders" CYCLES_OSL_IMPLIES= CYCLES OPENEXR PUGIXML CYCLES_OSL_LIB_DEPENDS= liboslcomp.so:graphics/openshadinglanguage DRACO_CMAKE_BOOL= WITH_DRACO DRACO_USE= LDCONFIG=${PYTHON_SITELIBDIR} EBOOL_CMAKE_BOOL= WITH_GMP EBOOL_LIB_DEPENDS= libgmp.so:math/gmp FFMPEG_CMAKE_BOOL= WITH_CODEC_FFMPEG FFMPEG_LDFLAGS= -L${LOCALBASE}/lib -lflite -lflite_cmu_us_kal \ -lflite_cmulex -lflite_usenglish FFMPEG_LIB_DEPENDS= libavutil.so:multimedia/ffmpeg \ libflite.so:audio/flite FFTW3_CMAKE_BOOL= WITH_FFTW3 FFTW3_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float FREESTYLE_CMAKE_BOOL= WITH_FREESTYLE FRIBIDI_CMAKE_BOOL= WITH_FRIBIDI FRIBIDI_LIB_DEPENDS= libfribidi.so:converters/fribidi HARFBUZZ_CMAKE_BOOL= WITH_HARFBUZZ HARFBUZZ_LIB_DEPENDS= libharfbuzz.so:print/harfbuzz HARU_CMAKE_BOOL= WITH_HARU HARU_LIB_DEPENDS= libhpdf.so:print/libharu HEADLESS_CMAKE_BOOL= WITH_HEADLESS HEADLESS_PREVENTS= MENU XINPUT XF86VMODE HEADLESS_PREVENTS_MSG= X11 options can't be used in headless mode INPUT_NDOF_CMAKE_BOOL= WITH_INPUT_NDOF INPUT_NDOF_LIB_DEPENDS= libspnav.so:misc/libspnav JACK_CMAKE_BOOL= WITH_JACK WITH_JACK_DYNLOAD JACK_LIB_DEPENDS= libjack.so:audio/jack MANIFOLD_CMAKE_BOOL= WITH_MANIFOLD MANIFOLD_LIB_DEPENDS= libmanifold.so:math/manifold MATERIALX_CMAKE_BOOL= WITH_MATERIALX MATERIALX_CMAKE_ON= -DMaterialX_DIR:STRING=${LOCALBASE}/lib/cmake/MaterialX \ -DMATERIALX_STDLIB_DIR:STRING=${LOCALBASE}/share/materialx \ -DMATERIALX_PYTHON_DIR:STRING=${PYTHON_SITELIBDIR}/MaterialX MATERIALX_LIB_DEPENDS= libMaterialXCore.so:graphics/materialx \ libMaterialXFormat.so:graphics/materialx MENU_USES= desktop-file-utils MOD_FLUID_CMAKE_BOOL= WITH_MOD_FLUID MOD_FLUID_IMPLIES= TBB MOD_OCEANSIM_CMAKE_BOOL= WITH_MOD_OCEANSIM MOD_OCEANSIM_IMPLIES= FFTW3 MOD_REMESH_CMAKE_BOOL= WITH_MOD_REMESH NLS_CMAKE_BOOL= WITH_INTERNATIONAL NLS_USES= gettext-tools OPENAL_CMAKE_BOOL= WITH_OPENAL OPENAL_USES= openal:al,alut OPENCOLORIO_CMAKE_BOOL= WITH_OPENCOLORIO OPENCOLORIO_LIB_DEPENDS= libOpenColorIO.so:graphics/opencolorio \ libyaml-cpp.so:devel/yaml-cpp \ libexpat.so:textproc/expat2 \ libpystring.so:devel/pystring OPENCOLORIO_USES= minizip OPENEXR_CFLAGS= -I${LOCALBASE}/include/Imath OPENEXR_CMAKE_BOOL= WITH_IMAGE_OPENEXR OPENEXR_LIB_DEPENDS= libImath.so:math/Imath \ libOpenEXR.so:graphics/openexr OPENIMAGEDN_CMAKE_BOOL= WITH_OPENIMAGEDENOISE OPENIMAGEDN_IMPLIES= TBB OPENIMAGEDN_LIB_DEPENDS= libOpenImageDenoise.so:graphics/oidn OPENJPEG_CMAKE_BOOL= WITH_IMAGE_OPENJPEG OPENJPEG_LIB_DEPENDS= libopenjp2.so:graphics/openjpeg OPENPGL_CMAKE_BOOL= WITH_CYCLES_PATH_GUIDING OPENPGL_LIB_DEPENDS= libopenpgl.so:graphics/openpgl OPENSUBDIV_CMAKE_BOOL= WITH_OPENSUBDIV OPENSUBDIV_LIB_DEPENDS= libosdCPU.so:graphics/opensubdiv OPENVDB_CMAKE_BOOL= WITH_OPENVDB WITH_OPENVDB_BLOSC OPENVDB_IMPLIES= OPENEXR TBB OPENVDB_LIB_DEPENDS= libopenvdb.so:misc/openvdb OPENXR_CMAKE_BOOL= WITH_XR_OPENXR OPENXR_LIB_DEPENDS= libopenxr_loader.so:graphics/openxr PIPEWIRE_CMAKE_BOOL= WITH_PIPEWIRE PIPEWIRE_LIB_DEPENDS= libpipewire-0.3.so:multimedia/pipewire POTRACE_CMAKE_BOOL= WITH_POTRACE POTRACE_LIB_DEPENDS= libpotrace.so:graphics/libpotrace PUGIXML_CMAKE_BOOL= WITH_PUGIXML WITH_IO_GREASE_PENCIL # GP IO needs pugixml - turn it off with pugi PUGIXML_LDFLAGS= -lfmt PUGIXML_LIB_DEPENDS= libpugixml.so:textproc/pugixml \ libfmt.so:devel/libfmt # libfmt is in place via openimageio, add here as we need -lfmt in LDFLAGS PULSEAUDIO_CMAKE_BOOL= WITH_PULSEAUDIO WITH_PULSEAUDIO_DYNLOAD PULSEAUDIO_LIB_DEPENDS= libpulse.so:audio/pulseaudio QUADRIFLOW_CMAKE_BOOL= WITH_QUADRIFLOW RUBBERBAND_CMAKE_BOOL= WITH_RUBBERBAND RUBBERBAND_LIB_DEPENDS= librubberband.so:audio/rubberband SDL_CMAKE_BOOL= WITH_SDL SDL_USE= SDL=sdl2 SDL_USES= sdl SIMD_CMAKE_BOOL= WITH_CPU_SIMD SIMD_EXTRA_PATCHES_OFF= ${PATCHDIR}/extra-patch-simd-off SNDFILE_CMAKE_BOOL= WITH_CODEC_SNDFILE SNDFILE_LIB_DEPENDS= libsndfile.so:audio/libsndfile TBB_CMAKE_BOOL= WITH_TBB TBB_LIB_DEPENDS= libtbb.so:devel/onetbb THUMBNAILER_CMAKE_BOOL= WITH_BLENDER_THUMBNAILER TRACE_CMAKE_BOOL= WITH_POTRACE TRACE_LIB_DEPENDS= libpotrace.so:graphics/libpotrace USD_BROKEN= does not build with current USD port USD_CMAKE_BOOL= WITH_USD USD_IMPLIES= TBB USD_LIB_DEPENDS= libusd_ms.so:graphics/openusd VULKAN_BUILD_DEPENDS= ${LOCALBASE}/include/vulkan/vulkan.h:graphics/vulkan-headers VULKAN_CMAKE_BOOL= WITH_VULKAN_BACKEND VULKAN_LDFLAGS= -lshaderc_shared -lSPIRV-Tools-shared VULKAN_LIB_DEPENDS= libshaderc_shared.so:graphics/shaderc \ libSPIRV-Tools-shared.so:graphics/spirv-tools \ libvulkan.so:graphics/vulkan-loader VULKAN_USES= localbase:ldflags # only relevant in the case of most options off WAYLAND_BUILD_DEPENDS= wayland-protocols>=1.15:graphics/wayland-protocols \ wayland>=1.12:graphics/wayland \ libdecor>0:x11-toolkits/libdecor WAYLAND_CATEGORIES= wayland WAYLAND_CMAKE_BOOL= WITH_GHOST_WAYLAND WITH_GHOST_WAYLAND_LIBDECOR \ WITH_GHOST_WAYLAND_DYNLOAD WAYLAND_LIB_DEPENDS= libxkbcommon.so:x11/libxkbcommon WEBP_CMAKE_BOOL= WITH_IMAGE_WEBP WEBP_LIB_DEPENDS= libwebp.so:graphics/webp XINPUT_CMAKE_BOOL= WITH_X11_XINPUT XINPUT_USE= XORG=xi post-patch: ${REINPLACE_CMD} -e 's|%%LLVM_VER%%|${LLVM_VERSION}|g' \ ${WRKSRC}/intern/cycles/kernel/osl/CMakeLists.txt post-build: @(cd ${WRKSRC}/doc/manpage && \ ${PYTHON_CMD} blender.1.py \ --blender ${INSTALL_WRKSRC}/bin/blender \ --output ${INSTALL_WRKSRC}/bin/${PORTNAME}.1) post-install: ${INSTALL_MAN} ${INSTALL_WRKSRC}/bin/${PORTNAME}.1 \ ${STAGEDIR}${PREFIX}/share/man/man1 ${MV} ${STAGEDIR}/${PREFIX}/bin/blender ${STAGEDIR}/${PREFIX}/bin/blender-bin ${REINPLACE_CMD} -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|g' ${WRKDIR}/blender ${INSTALL_SCRIPT} ${WRKDIR}/blender ${STAGEDIR}/${PREFIX}/bin/blender post-install-DRACO-on: # move draco pylib into site-packages ${MKDIR} ${STAGEDIR}/${PYTHON_SITELIBDIR}/ ${INSTALL_LIB} ${INSTALL_WRKSRC}/lib/libextern_draco.so ${STAGEDIR}/${PYTHON_SITELIBDIR}/ ${STRIP_CMD} ${STAGEDIR}/${PYTHON_SITELIBDIR}/libextern_draco.so @${RM} -R ${STAGEDIR}/${DATADIR}/${DISTVERSION:R}/python @${RM} ${STAGEDIR}/${DATADIR}/${DISTVERSION:R}/scripts/addons_core/io_scene_gltf2/libextern_draco.so post-install-MENU-on: @-update-desktop-database -q .include diff --git a/graphics/blender4/Makefile b/graphics/blender4/Makefile index 2791ecf82df2..432fa54aac15 100644 --- a/graphics/blender4/Makefile +++ b/graphics/blender4/Makefile @@ -1,258 +1,258 @@ PORTNAME= blender4 DISTVERSION= 4.5.5 PORTREVISION= 2 CATEGORIES= graphics multimedia MASTER_SITES= http://download.blender.org/source/ \ http://mirror.cs.umn.edu/blender.org/source/ \ http://public.planetmirror.com/pub/blender/source/ DISTNAME= blender-${DISTVERSION} MAINTAINER= FreeBSD@Shaneware.biz COMMENT= 3D modeling/rendering/animation package -v4.x WWW= https://www.blender.org/ LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/doc/license/GPL3-license.txt ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64 ONLY_FOR_ARCHS_REASON= static_assert(sizeof(unsigned long long) == sizeof(struct hipArray*)) -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libfreetype.so:print/freetype2 \ libepoxy.so:graphics/libepoxy \ libOpenImageIO.so:graphics/openimageio \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libzstd.so:archivers/zstd -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} # libboost_regex.so just acts as a placeholder; several boost # libraries are used, if either of the most common options in blender # are set. We will pull boost in just to be on the safe side. USES= cmake:noninja compiler:c++17-lang cpe eigen:3 jpeg llvm:build,run pkgconfig \ python:3.11 shebangfix tar:xz xorg USE_XORG= x11 xext xfixes xmu xrender SHEBANG_FILES= scripts/modules/bl_i18n_utils/merge_po.py \ scripts/modules/bl_i18n_utils/utils_rtl.py \ scripts/modules/blend_render_info.py CMAKE_ARGS= -DCMAKE_CXX_STANDARD:INTEGER=17 \ -DLLVM_CONFIG:STRING="${LOCALBASE}/bin/llvm-config${LLVM_VERSION}" .if defined(WITH_DEBUG) CMAKE_ARGS+= -DWITH_GHOST_DEBUG:BOOL=ON .endif CMAKE_ON= WITH_AUDASPACE WITH_BOOST WITH_CLANG WITH_GHOST_X11 WITH_GHOST_XDND \ WITH_HYDRA WITH_IO_GPENCIL WITH_IO_PLY WITH_IO_STL WITH_IO_WAVEFRONT_OBJ \ WITH_LLVM WITH_OPENGL_BACKEND WITH_PYTHON WITH_SYSTEM_EIGEN3 \ WITH_SYSTEM_FREETYPE WITH_X11_XINPUT WITH_X11_XF86VMODE WITH_X11_XFIXES CMAKE_OFF= WITH_GHOST_SDL WITH_INSTALL_PORTABLE WITH_LIBS_PRECOMPILED \ LLVM_STATIC WITH_MATERIALX WITH_MEM_JEMALLOC WITH_MEM_VALGRIND \ WITH_NANOVDB WITH_PYTHON_INSTALL WITH_PYTHON_INSTALL_NUMPY CFLAGS+= ${CFLAGS_${CHOSEN_COMPILER_TYPE}} CFLAGS_gcc= -Wno-float-conversion CXXFLAGS+= -DGLOG_USE_GLOG_EXPORT LDFLAGS+= -lexecinfo -Wl,--undefined-version SUB_FILES= blender LICDIR= ${PREFIX}/share/licenses/${PKGNAME} VERS_TAG= ${DISTVERSION:R:C/[.]//g} PLIST_SUB+= VER=${DISTVERSION:R} VERS_TAG=${VERS_TAG} OPTIONS_SUB= yes .include "${.CURDIR}/Makefile.options" ALEMBIC_CMAKE_BOOL= WITH_ALEMBIC ALEMBIC_IMPLIES= OPENEXR ALEMBIC_LIB_DEPENDS= libAlembic.so:graphics/alembic AVI_CMAKE_BOOL= WITH_CODEC_AVI BULLET_CMAKE_BOOL= WITH_BULLET CAMERATRACK_CMAKE_BOOL= WITH_LIBMV WITH_SYSTEM_GLOG CAMERATRACK_LIB_DEPENDS= libglog.so:devel/glog CINEON_CMAKE_BOOL= WITH_IMAGE_CINEON COLLADA_CMAKE_BOOL= WITH_OPENCOLLADA COLLADA_LIB_DEPENDS= libOpenCOLLADABaseUtils.so:graphics/opencollada \ libpcre.so:devel/pcre COLLADA_USE= GNOME=libxml2 COLLADA_USES= gnome COMPOSITOR_CMAKE_BOOL= WITH_COMPOSITOR_CPU CYCLES_CMAKE_BOOL= WITH_CYCLES WITH_CYCLES_LOGGING CYCLES_IMPLIES= TBB CYCLES_LDFLAGS= -L${LOCALBASE}/lib -lgflags 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OPENSUBDIV_CMAKE_BOOL= WITH_OPENSUBDIV OPENSUBDIV_LIB_DEPENDS= libosdCPU.so:graphics/opensubdiv OPENVDB_CMAKE_BOOL= WITH_OPENVDB WITH_OPENVDB_BLOSC OPENVDB_IMPLIES= OPENEXR TBB OPENVDB_LIB_DEPENDS= libopenvdb.so:misc/openvdb OPENXR_CMAKE_BOOL= WITH_XR_OPENXR OPENXR_LIB_DEPENDS= libopenxr_loader.so:graphics/openxr PIPEWIRE_CMAKE_BOOL= WITH_PIPEWIRE PIPEWIRE_LIB_DEPENDS= libpipewire-0.3.so:multimedia/pipewire POTRACE_CMAKE_BOOL= WITH_POTRACE POTRACE_LIB_DEPENDS= libpotrace.so:graphics/libpotrace PUGIXML_CMAKE_BOOL= WITH_PUGIXML PUGIXML_LIB_DEPENDS= libpugixml.so:textproc/pugixml PULSEAUDIO_CMAKE_BOOL= WITH_PULSEAUDIO WITH_PULSEAUDIO_DYNLOAD PULSEAUDIO_LIB_DEPENDS= libpulse.so:audio/pulseaudio QUADRIFLOW_CMAKE_BOOL= WITH_QUADRIFLOW SDL_CMAKE_BOOL= WITH_SDL WITH_SDL_DYNLOAD SDL_USE= SDL=sdl2 SDL_USES= sdl SIMD_CMAKE_BOOL= WITH_CPU_SIMD SIMD_EXTRA_PATCHES_OFF= ${PATCHDIR}/extra-patch-simd-off SNDFILE_CMAKE_BOOL= WITH_CODEC_SNDFILE SNDFILE_LIB_DEPENDS= libsndfile.so:audio/libsndfile TBB_CMAKE_BOOL= WITH_TBB TBB_LIB_DEPENDS= libtbb.so:devel/onetbb THUMBNAILER_CMAKE_BOOL= WITH_BLENDER_THUMBNAILER TRACE_CMAKE_BOOL= WITH_POTRACE TRACE_LIB_DEPENDS= libpotrace.so:graphics/libpotrace USD_BROKEN= require devel/tbb, which conflicts with devel/onetbb: \ https://github.com/PixarAnimationStudios/OpenUSD/issues/1650 USD_CMAKE_BOOL= WITH_USD USD_IMPLIES= TBB USD_LIB_DEPENDS= libusd_usd.so:graphics/openusd VULKAN_BUILD_DEPENDS= ${LOCALBASE}/include/vulkan/vulkan.h:graphics/vulkan-headers VULKAN_CMAKE_BOOL= WITH_VULKAN_BACKEND VULKAN_LDFLAGS= -lshaderc_shared -lSPIRV-Tools-shared VULKAN_LIB_DEPENDS= libshaderc_shared.so:graphics/shaderc \ libSPIRV-Tools-shared.so:graphics/spirv-tools \ libvulkan.so:graphics/vulkan-loader WAYLAND_BUILD_DEPENDS= wayland-protocols>=1.15:graphics/wayland-protocols \ wayland>=1.12:graphics/wayland \ libdecor>0:x11-toolkits/libdecor WAYLAND_CATEGORIES= wayland WAYLAND_CMAKE_BOOL= WITH_GHOST_WAYLAND WITH_GHOST_WAYLAND_LIBDECOR \ WITH_GHOST_WAYLAND_DYNLOAD WAYLAND_LIB_DEPENDS= libxkbcommon.so:x11/libxkbcommon WEBP_CMAKE_BOOL= WITH_IMAGE_WEBP WEBP_LIB_DEPENDS= libwebp.so:graphics/webp XF86VMODE_CMAKE_BOOL= WITH_X11_XF86VMODE XF86VMODE_USE= XORG=xi,xxf86vm XINPUT_CMAKE_BOOL= WITH_X11_XINPUT XINPUT_USE= XORG=xi post-patch: ${REINPLACE_CMD} -e 's|%%VERS_TAG%%|${VERS_TAG}|g' \ ${WRKSRC}/release/freedesktop/org.blender.Blender.metainfo.xml post-build: @(cd ${WRKSRC}/doc/manpage && \ ${PYTHON_CMD} blender.1.py \ --blender ${INSTALL_WRKSRC}/bin/blender \ --output ${INSTALL_WRKSRC}/bin/${PORTNAME}.1) post-install: ${REINPLACE_CMD} -e 's|%%VERS_TAG%%|${VERS_TAG}|g' \ -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|g' ${WRKDIR}/blender ${INSTALL_SCRIPT} ${WRKDIR}/blender ${STAGEDIR}${PREFIX}/bin/blender-${VERS_TAG} ${MV} ${STAGEDIR}${PREFIX}/bin/blender ${STAGEDIR}${PREFIX}/bin/blender-bin-${VERS_TAG} ${MKDIR} ${STAGEDIR}${DATADIR} ${MV} ${STAGEDIR}${PREFIX}/share/blender/${DISTVERSION:R}/* ${STAGEDIR}${DATADIR} ${FIND} ${STAGEDIR}${DATADIR}/scripts/addons_core -iname '*.orig' -delete ${RM} -R ${STAGEDIR}${PREFIX}/share/blender ${MKDIR} ${STAGEDIR}${DESKTOPDIR} ${MV} ${STAGEDIR}${DESKTOPDIR}/blender.desktop \ ${STAGEDIR}${DESKTOPDIR}/${PORTNAME}.desktop ${REINPLACE_CMD} -i '' -e 's|%%VERS_TAG%%|${VERS_TAG}|g' \ ${STAGEDIR}${DESKTOPDIR}/${PORTNAME}.desktop ${MKDIR} ${STAGEDIR}${LICDIR} ${MV} ${STAGEDIR}${PREFIX}/share/doc/blender/* ${STAGEDIR}${LICDIR} ${RM} -R ${STAGEDIR}${PREFIX}/share/doc/blender ${MV} ${STAGEDIR}${PREFIX}/share/icons/hicolor/symbolic/apps/blender-symbolic.svg \ ${STAGEDIR}${PREFIX}/share/icons/hicolor/symbolic/apps/blender-symbolic-${VERS_TAG}.svg ${MV} ${STAGEDIR}${PREFIX}/share/icons/hicolor/scalable/apps/blender.svg \ ${STAGEDIR}${PREFIX}/share/icons/hicolor/scalable/apps/blender-${VERS_TAG}.svg ${MV} ${STAGEDIR}${PREFIX}/share/metainfo/org.blender.Blender.metainfo.xml \ ${STAGEDIR}${PREFIX}/share/metainfo/org.blender.Blender-${VERS_TAG}.metainfo.xml post-install-THUMBNAILER-on: ${MV} ${STAGEDIR}${PREFIX}/bin/blender-thumbnailer \ ${STAGEDIR}${PREFIX}/bin/blender-thumbnailer-${VERS_TAG} post-install-DRACO-on: # move draco pylib into site-packages ${MKDIR} ${STAGEDIR}/${PYTHON_SITELIBDIR}/ ${INSTALL_LIB} ${INSTALL_WRKSRC}/lib/libextern_draco.so ${STAGEDIR}/${PYTHON_SITELIBDIR}/ ${STRIP_CMD} ${STAGEDIR}/${PYTHON_SITELIBDIR}/libextern_draco.so @${RM} -R ${STAGEDIR}/${DATADIR}/${DISTVERSION:R}/python @${RM} ${STAGEDIR}/${DATADIR}/scripts/addons_core/io_scene_gltf2/libextern_draco.so post-install-MENU-on: @-update-desktop-database -q .include diff --git a/graphics/mahotas/Makefile b/graphics/mahotas/Makefile index 5df3181c4d4c..e75dcf8fc11c 100644 --- a/graphics/mahotas/Makefile +++ b/graphics/mahotas/Makefile @@ -1,19 +1,19 @@ PORTNAME= mahotas PORTVERSION= 1.4.15 PORTREVISION= 1 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Computer vision and image processing library for Python WWW= https://packages.python.org/mahotas/ -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libfreeimage.so:graphics/freeimage USE_GCC= yes USES= python USE_PYTHON= distutils autoplist .include diff --git a/graphics/matplotlib-cpp/Makefile b/graphics/matplotlib-cpp/Makefile index c9ca0db12659..9aaa25c9b853 100644 --- a/graphics/matplotlib-cpp/Makefile +++ b/graphics/matplotlib-cpp/Makefile @@ -1,31 +1,31 @@ PORTNAME= matplotlib-cpp PORTVERSION= g20210422 PORTREVISION= 3 CATEGORIES= graphics devel MAINTAINER= yuri@FreeBSD.org COMMENT= Header-only C++ plotting library built on the popular matplotlib WWW= https://github.com/lava/matplotlib-cpp LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:testing compiler:c++17-lang python USE_GITHUB= yes GH_ACCOUNT= lava GH_TAGNAME= ef0383f CMAKE_TESTING_ON= FREEBSD_BUILD_EXAMPLES CMAKE_TESTING_TARGET= ${ALL_TARGET} NO_ARCH= yes PLIST_FILES= include/matplotlibcpp.h \ lib/matplotlib_cpp/cmake/matplotlib_cppConfig.cmake \ lib/matplotlib_cpp/cmake/matplotlib_cppTargets.cmake .include diff --git a/graphics/mypaint/Makefile b/graphics/mypaint/Makefile index 7e8362239784..4e9a378778b8 100644 --- a/graphics/mypaint/Makefile +++ b/graphics/mypaint/Makefile @@ -1,52 +1,52 @@ PORTNAME= mypaint DISTVERSIONPREFIX=v DISTVERSION= 2.0.1 PORTREVISION= 8 CATEGORIES= graphics PATCH_SITES= https://github.com/garynthompson/${PORTNAME}/commit/ # GTK input grab fix PATCHFILES= 94c623b788462fadb3e292b918edc4e90adf4faa.patch:-p1 MAINTAINER= ports@FreeBSD.org COMMENT= Fast painting/scribbling program WWW= http://mypaint.org/ LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= swig:devel/swig \ mypaint-brushes2>0:graphics/mypaint-brushes2 \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libjson-c.so:devel/json-c \ liblcms2.so:graphics/lcms2 \ libpng.so:graphics/png \ libmypaint.so:graphics/libmypaint RUN_DEPENDS= mypaint-brushes2>0:graphics/mypaint-brushes2 \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lib desktop-file-utils gettext gnome localbase \ pkgconfig python tar:xz USE_GITHUB= yes USE_GNOME= gtk30 pygobject3 cairo librsvg2:run USE_PYTHON= distutils py3kplist noflavors PYDISTUTILS_BUILD_TARGET= build build_ext CFLAGS+= ${CFLAGS_${CHOSEN_COMPILER_TYPE}} CFLAGS_gcc= -std=c99 USE_LDCONFIG= yes OPTIONS_DEFINE= OPENMP OPTIONS_DEFAULT_amd64= OPENMP OPTIONS_DEFAULT_powerpc64= OPENMP OPTIONS_DEFAULT_powerpc64le= OPENMP post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/mypaint/lib/_mypaintlib*.so .include .if !${PORT_OPTIONS:MOPENMP} PYDISTUTILS_BUILDARGS+= --disable-openmp .endif .include diff --git a/graphics/piglit/Makefile b/graphics/piglit/Makefile index 00ce7cf317ce..62f159a1cf8c 100644 --- a/graphics/piglit/Makefile +++ b/graphics/piglit/Makefile @@ -1,60 +1,60 @@ PORTNAME= piglit PORTVERSION= 20200910 PORTREVISION= 3 CATEGORIES= graphics MAINTAINER= x11@FreeBSD.org COMMENT= Automated OpenGL and OpenCL testsuite WWW= https://piglit.freedesktop.org/ LICENSE= MIT GPLv2 GPLv3 LGPL20 LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ vulkan-headers>0:graphics/vulkan-headers \ wayland-protocols>=0:graphics/wayland-protocols LIB_DEPENDS= libdrm.so:graphics/libdrm \ libpng.so:graphics/png \ libvulkan.so:graphics/vulkan-loader \ libwaffle-1.so:graphics/waffle \ libwayland-egl.so:graphics/wayland \ libxkbcommon.so:x11/libxkbcommon -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} USE_GITLAB= yes GL_SITE= https://gitlab.freedesktop.org GL_ACCOUNT= mesa GL_PROJECT= piglit GL_TAGNAME= 136a7f5fa0703603be1ffb338abe4865e76a8058 PATCH_SITES= https://gitlab.freedesktop.org/mesa/piglit/-/commit/ PATCH_DIST_STRIP= -p1 PATCHFILES+= 7f1916da04fc.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= c6a4d8aa8e68.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= 0443b6a18648.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= 96d8ddd0a658.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= d5f4cfd3b0da.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= 64c468c6c7e3.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 PATCHFILES+= 681e86f53c2e.patch # https://gitlab.freedesktop.org/mesa/piglit/-/merge_requests/383 USES= cmake compiler:c11 gl pkgconfig python shebangfix xorg USE_GL= egl gbm gl glu USE_XORG= x11 xcb xext xrender SHEBANG_FILES= piglit CMAKE_ON= PIGLIT_BUILD_GLES2_TESTS PIGLIT_BUILD_GLES3_TESTS LDFLAGS+= -L${LOCALBASE}/lib SUB_FILES= pkg-message DATADIR= ${PREFIX}/lib/piglit PORTDATA= * OPTIONS_DEFINE= DOCS .include diff --git a/graphics/py-PyOpenGL/Makefile b/graphics/py-PyOpenGL/Makefile index 20055f63b7ad..44661f33ebfb 100644 --- a/graphics/py-PyOpenGL/Makefile +++ b/graphics/py-PyOpenGL/Makefile @@ -1,40 +1,40 @@ PORTNAME= PyOpenGL PORTVERSION= 3.1.7 PORTREVISION= 3 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} #DISTNAME= PyOpenGL-${PORTVERSION} MAINTAINER= python@FreeBSD.org COMMENT= OpenGL (and related library) interface for Python WWW= https://pyopengl.sourceforge.net/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} NO_ARCH= yes OPTIONS_DEFINE= TKINTER OPTIONS_DEFAULT= TKINTER TKINTER_DESC= Build with tkinter for X support USES= dos2unix gl python USE_GL= glut USE_PYTHON= distutils autoplist TKINTER_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tkinter>0:x11-toolkits/py-tkinter@${PY_FLAVOR} TKINTER_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tkinter>0:x11-toolkits/py-tkinter@${PY_FLAVOR} post-patch: @${FIND} ${WRKSRC} -name '*.[ch]' | ${XARGS} ${REINPLACE_CMD} -e \ 's|||g' @${FIND} ${WRKSRC} -name "*.bak" -delete ${REINPLACE_CMD} -e 's|posix |posix|g' ${WRKSRC}/OpenGL/__init__.py .include diff --git a/graphics/py-agx-emulsion/Makefile b/graphics/py-agx-emulsion/Makefile index 18de2d853b35..12e5d5db5845 100644 --- a/graphics/py-agx-emulsion/Makefile +++ b/graphics/py-agx-emulsion/Makefile @@ -1,39 +1,39 @@ PORTNAME= agx-emulsion DISTVERSIONPREFIX= v DISTVERSION= 0.1.0-alpha DISTVERSIONSUFFIX= -84-g0e0baf2 PORTREVISION= 2 CATEGORIES= graphics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Spectral simulation of analog photography processes WWW= https://github.com/andreavolpato/agx-emulsion LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}openimageio>0:graphics/py-openimageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colour-science>=0.4.6:graphics/py-colour-science@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dotmap>=1.3.30:devel/py-dotmap@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lmfit>=1.3.2:math/py-lmfit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}magicgui>=0.10.0:x11-toolkits/py-magicgui@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari>=0.5.5:misc/py-napari@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.61.0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}opt-einsum>=3.4.0:math/py-opt-einsum@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyFFTW>=0.15.0:math/py-pyFFTW@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.14.1:science/py-scipy@${PY_FLAVOR} USES= pyqt:5 python USE_PYTHON= distutils concurrent autoplist USE_PYQT= pyqt5 USE_GITHUB= yes GH_ACCOUNT= andreavolpato NO_ARCH= yes .include diff --git a/graphics/py-albucore/Makefile b/graphics/py-albucore/Makefile index 1b6e61c088fa..002ce465a24b 100644 --- a/graphics/py-albucore/Makefile +++ b/graphics/py-albucore/Makefile @@ -1,35 +1,35 @@ PORTNAME= albucore DISTVERSION= 0.0.24 PORTREVISION= 1 CATEGORIES= graphics python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High-performance image processing library WWW= https://github.com/albumentations-team/albucore LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}simsimd>=5.9.2:devel/py-simsimd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}stringzilla>=3.10.4:devel/py-stringzilla@${PY_FLAVOR} \ opencv>0:graphics/opencv TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>=4.1.0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruff>0:devel/py-ruff@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= albumentations-team NO_ARCH= yes # tests as of 0.0.24: 734 passed in 7.56s .include diff --git a/graphics/py-albumentations/Makefile b/graphics/py-albumentations/Makefile index 40ad7a86c484..448267793e64 100644 --- a/graphics/py-albumentations/Makefile +++ b/graphics/py-albumentations/Makefile @@ -1,33 +1,33 @@ PORTNAME= albumentations DISTVERSION= 2.0.5 PORTREVISION= 3 CATEGORIES= graphics python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast image augmentation library and wrapper around other libraries WWW= https://albumentations.ai \ https://github.com/albumentations-team/albumentations LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}albucore>=0.0.23:graphics/py-albucore@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.9.2:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.3.2:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deepdiff>0:devel/py-deepdiff@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes # tests as of 2.0.1: 3 passed in 13.03s .include diff --git a/graphics/py-cairocffi/Makefile b/graphics/py-cairocffi/Makefile index 4d0d11c890a2..0d24655e733f 100644 --- a/graphics/py-cairocffi/Makefile +++ b/graphics/py-cairocffi/Makefile @@ -1,39 +1,39 @@ PORTNAME= cairocffi PORTVERSION= 1.7.1 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= dch@FreeBSD.org COMMENT= CFFI-based Cairo bindings for Python WWW= https://github.com/kozea/cairocffi LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.1.0:devel/py-cffi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>=1.1.0:devel/py-cffi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xcffib>=0.3.2:x11/py-xcffib@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ gdk-pixbuf2>0:graphics/gdk-pixbuf2 USES= gnome python USE_GNOME= cairo USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes # --record output is not complete so supplement autoplist w/ a plist for now # https://github.com/Kozea/cairocffi/issues/108 # _generated files only exist after install not build # so copy them to the src directory so we can run tests against WRKSRC # # -v = verbose, -rs print skip reasons, -o override tox.ini/pytest.ini args do-test: ${CP} -Rp ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/_generated ${WRKSRC}/${PORTNAME} ${TOUCH} ${WRKSRC}/${PORTNAME}/_generated/__init__.py @cd ${WRKSRC} && ${PYTHON_CMD} -m pytest -v -rs -o addopts= .include diff --git a/graphics/py-easyocr/Makefile b/graphics/py-easyocr/Makefile index 85f12293bdfb..f91cc1fc8ee5 100644 --- a/graphics/py-easyocr/Makefile +++ b/graphics/py-easyocr/Makefile @@ -1,39 +1,39 @@ PORTNAME= easyocr DISTVERSIONPREFIX= v DISTVERSION= 1.7.2 PORTREVISION= 1 CATEGORIES= graphics python #MASTER_SITES= PYPI # no tarball PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= End-to-end multi-lingual Optical Character Recognition (OCR) solution WWW= https://github.com/jaidedai/easyocr LICENSE= GPLv3 USES= python USE_PYTHON= distutils autoplist pytest -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ opencv>0:graphics/opencv \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyclipper>0:math/py-pyclipper@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-bidi>0:textproc/py-python-bidi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}shapely>0:devel/py-shapely@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>=0.5:misc/py-torchvision@${PY_FLAVOR} \ USE_GITHUB= yes GH_ACCOUNT= jaidedai WRKSRC= ${WRKDIR}/EasyOCR-${DISTVERSION} NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/graphics/py-fury/Makefile b/graphics/py-fury/Makefile index 3ede5fac21a2..c1d992f165fb 100644 --- a/graphics/py-fury/Makefile +++ b/graphics/py-fury/Makefile @@ -1,38 +1,38 @@ PORTNAME= fury DISTVERSION= 0.12.0 PORTREVISION= 4 CATEGORIES= graphics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Free Unified Rendering in Python WWW= https://fury.gl/latest/index.html LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>=0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}aiohttp>=3.8.4:www/py-aiohttp@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.4:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=17.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=5.4.1:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygltflib>=1.15.3:graphics/py-pygltflib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0:science/py-scipy@${PY_FLAVOR} \ vtk${VTK_VER:R}>0:math/vtk${VTK_VER:R} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.3:math/py-matplotlib@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests fail with signal 10, see https://github.com/fury-gl/fury/issues/795 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes test-simple: @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test-earth_8k.py .include <../../math/vtk9/Makefile.version> .include diff --git a/graphics/py-gizeh/Makefile b/graphics/py-gizeh/Makefile index 923ccdd21dae..a853234d0077 100644 --- a/graphics/py-gizeh/Makefile +++ b/graphics/py-gizeh/Makefile @@ -1,22 +1,22 @@ PORTNAME= gizeh DISTVERSION= 0.1.11 PORTREVISION= 5 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simple vector graphics in Python WWW= https://github.com/Zulko/gizeh LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENCE.txt RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cairocffi>0:graphics/py-cairocffi@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/graphics/py-imutils/Makefile b/graphics/py-imutils/Makefile index a6d3e9a2a278..559e3de416cf 100644 --- a/graphics/py-imutils/Makefile +++ b/graphics/py-imutils/Makefile @@ -1,17 +1,17 @@ PORTNAME= imutils PORTVERSION= 0.5.4 PORTREVISION= 3 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= python@FreeBSD.org COMMENT= Series of convenience image processing functions WWW= https://github.com/PyImageSearch/imutils -RUN_DEPENDS= opencv>0:graphics/opencv ${PYNUMPY} +RUN_DEPENDS= opencv>0:graphics/opencv ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils .include diff --git a/graphics/py-mayavi/Makefile b/graphics/py-mayavi/Makefile index de4975462def..090c0f05edaf 100644 --- a/graphics/py-mayavi/Makefile +++ b/graphics/py-mayavi/Makefile @@ -1,60 +1,60 @@ PORTNAME= mayavi DISTVERSION= 4.8.2 PORTREVISION= 9 CATEGORIES= graphics science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Application and library for 3D visualization and plotting in Python WWW= http://code.enthought.com/pages/mayavi-project.html LICENSE= BSD3CLAUSE LGPL21 LGPL20 EPL LGPL3 BSD2CLAUSE APACHE11 # see ${WRKSRC}/image_LICENSE.txt LICENSE_COMB= multi LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/LICENSE.txt LICENSE_FILE_LGPL21= ${WRKSRC}/image_LICENSE_Nuvola.txt LICENSE_FILE_LGPL20= ${WRKSRC}/image_LICENSE_CP.txt LICENSE_FILE_EPL= ${WRKSRC}/image_LICENSE_Eclipse.txt LICENSE_FILE_LGPL3= ${WRKSRC}/image_LICENSE_OOo.txt LICENSE_FILE_BSD2CLAUSE= ${WRKSRC}/LICENSE_YORICK.txt LICENSE_FILE_APACHE11= ${WRKSRC}/LICENSE_COLORBREWER.txt BROKEN= compilation fails: VTK throws std::runtime_erroe, see https://gitlab.kitware.com/vtk/vtk/-/issues/19994 BROKEN_i386= stage fails: Building TVTK classes... Fatal Python error: Illegal instruction -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SPHINX} \ sphinx-build:textproc/py-sphinx@${PY_FLAVOR} LIB_DEPENDS= libvtkCommonCore-${VTK_VER}.so:math/vtk${VTK_VER:R} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}apptools>0:devel/py-apptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}envisage>0:devel/py-envisage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyface>=6.1.1:devel/py-pyface@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traits>=6.0.0:devel/py-traits@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traitsui>=7.0.0:graphics/py-traitsui@${PY_FLAVOR} # list is in mayavi/__init__.py USES= python shebangfix USE_PYTHON= distutils autoplist USE_WX= 3.2 WX_COMPS= python:run SHEBANG_FILES= mayavi/scripts/mayavi2 \ mayavi/tests/csv_files/csv_2_py POST_PLIST= fix-plist post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/tvtk/array_ext*.so fix-plist: @${REINPLACE_CMD} -e "s|${PYTHONPREFIX_SITELIBDIR:S/${PREFIX}\///}/mayavi/preferences/__pycache__$$||" ${TMPPLIST} @${REINPLACE_CMD} -e "s|${PYTHONPREFIX_SITELIBDIR:S/${PREFIX}\///}/tvtk/plugins/scene/__pycache__$$||" ${TMPPLIST} do-test: @${SETENV} ${TEST_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} ${PYTHON_CMD} ${WRKSRC}/examples/mayavi/interactive/coil_design_application.py .include <../../math/vtk9/Makefile.version> .include diff --git a/graphics/py-moderngl-window/Makefile b/graphics/py-moderngl-window/Makefile index 20afb79b0fbf..3d2ac144f532 100644 --- a/graphics/py-moderngl-window/Makefile +++ b/graphics/py-moderngl-window/Makefile @@ -1,38 +1,38 @@ PORTNAME= moderngl-window DISTVERSION= 3.1.0 PORTREVISION= 2 CATEGORIES= graphics #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for ModernGL making window creation & resource loading simple WWW= https://github.com/moderngl/moderngl-window LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}moderngl<6:graphics/py-moderngl@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pyglet>=2.0.0:graphics/py-pyglet@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyglm>=2.7.0:graphics/py-pyglm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyrr>=0.10.3,<1:math/py-pyrr@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}PyWavefront>0:misc/py-PyWavefront@${PY_FLAVOR} # optional #RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}trimesh>0:devel/py-trimesh@${PY_FLAVOR} # optional, causes conflicts due to pyglet1 vs. pyglet USES= python USE_PYTHON= pep517 autoplist pytest # some tests fail due to missing trimesh USE_GITHUB= yes GH_ACCOUNT= moderngl NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 3.1.0: 1 failed, 61 passed, 58 errors in 12.83s .include diff --git a/graphics/py-moderngl/Makefile b/graphics/py-moderngl/Makefile index 837ce11e488d..bb5554e6d85a 100644 --- a/graphics/py-moderngl/Makefile +++ b/graphics/py-moderngl/Makefile @@ -1,36 +1,36 @@ PORTNAME= moderngl DISTVERSION= 5.12.0 PORTREVISION= 1 CATEGORIES= graphics #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= ModernGL: High performance rendering for Python 3 WWW= https://moderngl.readthedocs.io/en/latest/ \ https://github.com/moderngl/moderngl LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}glcontext>=3.0.0:graphics/py-glcontext@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>0:graphics/py-PyOpenGL@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.2.1:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # 1 test fails due to path mismatch, see https://github.com/pytest-dev/pytest/issues/11142 USE_GITHUB= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/moderngl/mgl${PYTHON_TAG}.so # tests as of 5.12.0: 1 failed, 322 passed, 37 skipped in 24.63s, see https://github.com/moderngl/moderngl/issues/722 .include diff --git a/graphics/py-mpl-scatter-density/Makefile b/graphics/py-mpl-scatter-density/Makefile index 7270ed85c035..2dbcfe6fec72 100644 --- a/graphics/py-mpl-scatter-density/Makefile +++ b/graphics/py-mpl-scatter-density/Makefile @@ -1,25 +1,25 @@ PORTNAME= mpl-scatter-density PORTVERSION= 0.7 PORTREVISION= 4 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Matplotlib helpers to make density scatter plots WWW= https://github.com/astrofrog/mpl-scatter-density LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fast-histogram>=0.3:misc/py-fast-histogram@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.0:math/py-matplotlib@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/graphics/py-pyqtgraph/Makefile b/graphics/py-pyqtgraph/Makefile index 1df64047680d..48c875d1404d 100644 --- a/graphics/py-pyqtgraph/Makefile +++ b/graphics/py-pyqtgraph/Makefile @@ -1,29 +1,29 @@ PORTNAME= pyqtgraph DISTVERSION= 0.13.7 PORTREVISION= 3 CATEGORIES= graphics science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Scientific graphics and GUI library for Python WWW= https://www.pyqtgraph.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colorcet>0:graphics/py-colorcet@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>0:graphics/py-PyOpenGL@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} # dependencies are in tox.ini RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}qt5-pyqt>0:devel/py-qt5-pyqt@${PY_FLAVOR} # PyQtGraph requires one of PyQt5, PyQt6, PySide2 or PySide6 TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes .include diff --git a/graphics/py-pyrsgis/Makefile b/graphics/py-pyrsgis/Makefile index cdda6c302873..b36aa9fc4298 100644 --- a/graphics/py-pyrsgis/Makefile +++ b/graphics/py-pyrsgis/Makefile @@ -1,27 +1,27 @@ PORTNAME= pyrsgis PORTVERSION= 0.4.1 PORTREVISION= 5 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Processing satellite data directly from TAR files WWW= https://github.com/PratyushTripathy/pyrsgis LICENSE= MIT RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}gdal>=0:graphics/py-gdal@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib-scalebar>=0:math/py-matplotlib-scalebar@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/graphics/py-pytesseract/Makefile b/graphics/py-pytesseract/Makefile index 6af70194188f..3bc1269bc506 100644 --- a/graphics/py-pytesseract/Makefile +++ b/graphics/py-pytesseract/Makefile @@ -1,45 +1,45 @@ PORTNAME= pytesseract PORTVERSION= 0.3.13 PORTREVISION= 2 DISTVERSIONPREFIX= v CATEGORIES= graphics python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= mandree@FreeBSD.org COMMENT= wrapper for Google's Tesseract OCR engine WWW= https://github.com/madmaze/pytesseract PATCH_STRIP= -p1 LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= tesseract:graphics/tesseract \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} TEST_DEPENDS= ${RUN_DEPENDS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tox>0:devel/py-tox@${PY_FLAVOR} # if py-tox cannot detect py-filelock, be sure to have version 3.4.2_1 of the latter USES= localbase python USE_GITHUB= yes GH_ACCOUNT= madmaze USE_PYTHON= autoplist concurrent distutils NO_ARCH= yes do-test: # FIXME hack alert. graphics/leptonica by default does not include # jpeg2000 (openjpeg) support, and the pytesseract self-test is not # smart enough to detect that and skip the test, so let us check # and punch out the jpeg2000 test if it is pointless running it. # https://github.com/madmaze/pytesseract/issues/419 @if ${READELF} -d ${LOCALBASE}/lib/liblept.so | ${EGREP} -q '\.+\&2 '===> liblept.so (graphics/leptonica) is linked without libopenjp2, disabling JPEG2000 test' ; \ ${REINPLACE_CMD} '/jpeg2000/d' ${WRKSRC}/tests/pytesseract_test.py ; \ fi cd ${WRKSRC} && ${SETENV} ${TEST_ENV} tox-${PYTHON_VER} -e ${PY_FLAVOR} --sitepackages .include diff --git a/graphics/py-pyvista/Makefile b/graphics/py-pyvista/Makefile index 14355a18e271..c7d4bbb8a61d 100644 --- a/graphics/py-pyvista/Makefile +++ b/graphics/py-pyvista/Makefile @@ -1,28 +1,28 @@ PORTNAME= pyvista DISTVERSION= 0.34.2 PORTREVISION= 9 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pythonic interface to VTK WWW= https://github.com/pyvista/pyvista LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>0:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scooby>=0.5.1:devel/py-scooby@${PY_FLAVOR} \ vtk${VTK_VER:R}>0:math/vtk${VTK_VER:R} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include <../../math/vtk9/Makefile.version> .include diff --git a/graphics/py-qudida/Makefile b/graphics/py-qudida/Makefile index 4e93e80d4bd7..df4d439d2fd0 100644 --- a/graphics/py-qudida/Makefile +++ b/graphics/py-qudida/Makefile @@ -1,24 +1,24 @@ PORTNAME= qudida DISTVERSION= 0.0.4 PORTREVISION= 3 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= QUick and DIrty Domain Adaptation WWW= https://github.com/arsenyinfo/qudida LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ opencv>=4.0.1:graphics/opencv \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/graphics/py-scikit-image/Makefile b/graphics/py-scikit-image/Makefile index 807e62445f1d..e418b34742d6 100644 --- a/graphics/py-scikit-image/Makefile +++ b/graphics/py-scikit-image/Makefile @@ -1,40 +1,40 @@ PORTNAME= scikit-image PORTVERSION= 0.26.0 PORTREVISION= 1 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= scikit_image-${DISTVERSION} MAINTAINER= makc@FreeBSD.org COMMENT= Image processing in Python WWW= https://scikit-image.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.4:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meson-python>=0.16:devel/meson-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pythran>=0.16:devel/py-pythran@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>2.35.0:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.4:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=3.0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=21:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=10.1:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.11.4:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tifffile>=2022.8.12:graphics/py-tifffile@${PY_FLAVOR} USES= compiler:c++11-lang python shebangfix USE_PYTHON= autoplist cython pep517 BINARY_ALIAS= python=${PYTHON_CMD} \ python3=${PYTHON_CMD} post-install: @${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR}/skimage -name "*.so" -exec ${STRIP_CMD} {} \; .include diff --git a/graphics/py-simplejpeg/Makefile b/graphics/py-simplejpeg/Makefile index 8487c9744542..dbeac4d54a59 100644 --- a/graphics/py-simplejpeg/Makefile +++ b/graphics/py-simplejpeg/Makefile @@ -1,33 +1,33 @@ PORTNAME= simplejpeg DISTVERSION= 1.8.0 PORTREVISION= 1 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simple package for fast JPEG encoding and decoding WWW= https://gitlab.com/jfolz/simplejpeg LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} USES= cmake:indirect python USE_PYTHON= autoplist cython pep517 pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test post-extract: # force cythonization because pre-cythonized _jpeg.c fails to compile @${RM} ${WRKSRC}/simplejpeg/_jpeg.c post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/simplejpeg/_jpeg${PYTHON_TAG}.so # tests as of 1.8.0: 61 passed in 10.57s .include diff --git a/graphics/py-vispy/Makefile b/graphics/py-vispy/Makefile index 0bf768448b9f..18c3c44a00d1 100644 --- a/graphics/py-vispy/Makefile +++ b/graphics/py-vispy/Makefile @@ -1,34 +1,34 @@ PORTNAME= vispy DISTVERSION= 0.15.2 PORTREVISION= 1 CATEGORIES= graphics science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High-performance interactive 2D/3D data visualization library WWW= https://vispy.org/ \ https://github.com/vispy/vispy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=7.1:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}freetype-py>0:print/py-freetype-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hsluv>0:graphics/py-hsluv@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}kiwisolver>0:math/py-kiwisolver@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython pep517 pytest # pytest crashes on some tests, and then keeps restarting TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/vispy/visuals/text/_sdf_cpu${PYTHON_TAG}.so .include diff --git a/graphics/py-visvis/Makefile b/graphics/py-visvis/Makefile index ee7e9e9cf01f..b8dcd4f0c4c9 100644 --- a/graphics/py-visvis/Makefile +++ b/graphics/py-visvis/Makefile @@ -1,34 +1,34 @@ PORTNAME= visvis PORTVERSION= 1.15.0 PORTREVISION= 3 CATEGORIES= graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Object oriented approach to visualization of 1D to 4D data WWW= https://github.com/almarklein/visvis LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libfltk.so:x11-toolkits/fltk BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>=3.2.0<4:devel/py-flit-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>=0:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>=0:graphics/py-PyOpenGL@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyside2>=0:devel/pyside2@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flake8>=5.0:devel/py-flake8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>=0:devel/py-hypothesis@${PY_FLAVOR} USES= gl python pyqt:5 shebangfix USE_GL= gl USE_PYQT= pyqt5 USE_PYTHON= autoplist pep517 pytest USE_WX= 3.0+ SHEBANG_FILES= examples/*.py NO_ARCH= yes .include diff --git a/graphics/qgis-ltr/Makefile b/graphics/qgis-ltr/Makefile index 839324c8ee0f..82af182c6f5f 100644 --- a/graphics/qgis-ltr/Makefile +++ b/graphics/qgis-ltr/Makefile @@ -1,197 +1,197 @@ PORTNAME= qgis DISTVERSION= 3.40.15 PORTREVISION= 2 CATEGORIES= graphics geography MASTER_SITES= https://qgis.org/downloads/ PKGNAMESUFFIX= -ltr MAINTAINER= rhurlin@FreeBSD.org COMMENT= Free and Open Source Geographic Information System WWW= https://qgis.org/en/site/ LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/doc/LICENSE BUILD_DEPENDS= gpsbabel>=1.7.0:astro/gpsbabel \ opencl>=0:devel/opencl \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}cycler>=0.11.0:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.2:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.18.2:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httplib2>=0.20.2:www/py-httplib2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>=0.18.1:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.1.2:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}markupsafe>=2.1.1:textproc/py-markupsafe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=4.0.3:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}OWSLib>=0.27.2:graphics/py-OWSLib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pbr>=5.10.0:devel/py-pbr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>=22.2.2:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.14.3:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=2.13.0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproj>=3.4.0:graphics/py-pyproj@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2020.5:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.28.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.16.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlite3>=3.7.16:databases/py-sqlite3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4.1:devel/py-pyyaml@${PY_FLAVOR} LIB_DEPENDS= libabsl_log_internal_check_op.so:devel/abseil \ libdraco.so:archivers/draco \ libexiv2.so:graphics/exiv2 \ libexpat.so:textproc/expat2 \ libfreexl.so:textproc/freexl \ libgdal.so:graphics/gdal \ libgeos.so:graphics/geos \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libmdal.so:math/mdal \ libminizip.so:archivers/minizip \ libnetcdf.so:science/netcdf \ libOpenCL.so:devel/ocl-icd \ libpdalcpp.so:math/pdal \ libproj.so:graphics/proj \ libprotobuf-lite.so:devel/protobuf \ libqca-qt5.so:devel/qca@qt5 \ libqscintilla2_qt5.so:devel/qscintilla2@qt5 \ libqt5keychain.so:security/qtkeychain@qt5 \ libqwt.so:x11-toolkits/qwt6@qt5 \ librttopo.so:devel/librttopo \ libspatialite.so:databases/spatialite \ libsz.so:science/libaec \ libxerces-c.so:textproc/xerces-c3 \ libzip.so:archivers/libzip \ libzstd.so:archivers/zstd RUN_DEPENDS= astyle:devel/astyle \ opencl>=0:devel/opencl \ ${PYTHON_PKGNAMEPREFIX}black>=22.10:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cycler>=0.11.0:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.2:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fiona>=1.8.21:graphics/py-fiona@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.18.2:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gdal>=3.5.2:graphics/py-gdal@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geojson>=2.3.0:devel/py-geojson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geopandas>=0.11.1:graphics/py-geopandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httplib2>=0.20.2:www/py-httplib2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>=0.18.1:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.1.2:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}laspy>=2.5.1:misc/py-laspy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}markupsafe>=2.1.1:textproc/py-markupsafe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=4.0.3:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nbformat>=5.7.0:devel/py-nbformat@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>=1.6.2:science/py-netCDF4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.8.8:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nltk>=3.7:textproc/py-nltk@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}OWSLib>=0.27.2:graphics/py-OWSLib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pbr>=5.10.0:devel/py-pbr@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pip>=22.2.2:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.14.3:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.9.2:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psycopg2>=2.9.4:databases/py-psycopg2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=2.13.0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproj>=3.4.0:graphics/py-pyproj@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyrsgis>=0.4.1:graphics/py-pyrsgis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2020.5:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rasterio>=1.3.2:graphics/py-rasterio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.28.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.19.3:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.1.3:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}shapely>=1.8.5:devel/py-shapely@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.16.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlite3>=3.7.16:databases/py-sqlite3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}termcolor>=2.1.0:devel/py-termcolor@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xcffib>=0.11.1:x11/py-xcffib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xlrd>=2.0.1:textproc/py-xlrd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4.1:devel/py-pyyaml@${PY_FLAVOR} ### Fortran is needed by numpy, GRASS, etc. USES= bison cmake compiler:features desktop-file-utils \ fortran gl gmake gnome iconv pgsql pyqt:5 python qt:5 \ shebangfix sqlite:3 tar:bz2 USE_GL= gl USE_GNOME= libxml2 USE_LDCONFIG= yes USE_PYQT= pyqt5 pysip qscintilla2 qtbuilder:build sip:build webengine USE_QT= 3d buildtools:build core concurrent dbus declarative \ designer:build qdoc:build gamepad gui linguist:build location \ multimedia network printsupport qmake:build script serialport \ sql sql-pgsql sql-sqlite3 svg testlib uitools:build \ webchannel webengine widgets xml SHEBANG_FILES= src/plugins/grass/scripts/*.py # Python_EXECUTABLE: Use the default version if multiple Pythons are available CMAKE_ARGS+= -DCMAKE_BUILD_TYPE:STRING=Release \ -DHAVE_PGCONFIG=1 \ -DPYRCC_PROGRAM:FILEPATH=${LOCALBASE}/bin/pyrcc5-${PYTHON_VER} \ -DPYUIC_PROGRAM:FILEPATH=${LOCALBASE}/bin/pyuic5-${PYTHON_VER} \ -DPython_EXECUTABLE=${PYTHON_CMD} \ -DQSCI_SIP_DIR:PATH=${PYQT_SIPDIR}/Qsci \ -DQWT_INCLUDE_DIR:PATH=${LOCALBASE}/include/qt5/qwt6 \ -DQWT_LIBRARY:FILEPATH=${LOCALBASE}/lib/qt5/libqwt.so \ -DQGIS_MANUAL_SUBDIR:PATH=share/man # [2025-10-25] Use internal spatialindex, as the one in the ports is too new: # -- Found Spatialindex: /usr/local/lib/libspatialindex.so (2.1.0) # CMake Error at CMakeLists.txt:460 (message): # Cannot build QGIS using libspatialindex >= 2.1, see # https://github.com/libspatialindex/libspatialindex/issues/276 CMAKE_ON= USE_OPENCL WITH_3D WITH_ASTYLE WITH_BINDINGS WITH_COPC \ WITH_CUSTOM_WIDGETS WITH_DRACO WITH_EPT WITH_INTERNAL_LAZPERF \ WITH_POSTGRESQL WITH_QTWEBENGINE WITH_INTERNAL_SPATIALINDEX CMAKE_OFF= ENABLE_TESTS USE_CCACHE WITH_INTERNAL_MDAL WITH_QTWEBKIT WITH_QWTPOLAR CONFLICTS_INSTALL= qgis PLIST_SUB= DISTVERSION=${PORTVERSION} .if !defined(MAINTAINER_MODE) CMAKE_ARGS+= -Wno-dev CMAKE_OFF+= SUPPRESS_QT_WARNINGS .endif OPTIONS_DEFINE= SERVER GRASS OPTIONS_DEFAULT= SERVER GRASS NO_OPTIONS_SORT= yes OPTIONS_SUB= yes GRASS_DESC= Add GRASS GIS to processing tools SERVER_DESC= Enable QGIS server GRASS_BUILD_DEPENDS= grass8:databases/grass8 GRASS_RUN_DEPENDS= ${GRASS_BUILD_DEPENDS} GRASS_CMAKE_BOOL= WITH_GRASS8 SERVER_LIB_DEPENDS= libfcgi.so:www/fcgi SERVER_CMAKE_BOOL= WITH_SERVER WITH_SERVER_PLUGINS WITH_QSPATIALITE .include pre-patch: # Only PostgreSQL Client headers, not Server @${REINPLACE_CMD} -e 's|set(POSTGRES_INCLUDE_DIR \$${PostgreSQL_INCLUDE_DIRS})|set(POSTGRES_INCLUDE ${LOCALBASE}/include)|g' \ ${WRKSRC}/cmake/FindPostgres.cmake post-patch: @${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \ ${WRKSRC}/cmake/FindGRASS.cmake # On i386, '-mllvm -inline-threshold=128' does not build under all circumstances # See bugs 242557 and 241687. .if ${OPSYS} == FreeBSD && ${ARCH} == "i386" @${REINPLACE_CMD} -e 's|"-mllvm -inline-threshold=128"|"-O1"|g' \ ${WRKSRC}/src/core/CMakeLists.txt .endif pre-configure: ${MKDIR} ${CONFIGURE_WRKSRC}/bin && ${LN} -s ${PYTHON_CMD} ${CONFIGURE_WRKSRC}/bin/python3 post-install: @${RM} ${STAGEDIR}${DATADIR}/python/pytz/tzfile.py.bak @${FIND} ${STAGEDIR}${LOCALBASE} -name "__pycache__" -delete @${RM} /tmp/srs.db check: @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check .include diff --git a/graphics/qgis/Makefile b/graphics/qgis/Makefile index d88b395274ed..a41563374b08 100644 --- a/graphics/qgis/Makefile +++ b/graphics/qgis/Makefile @@ -1,197 +1,197 @@ PORTNAME= qgis DISTVERSION= 3.44.7 PORTREVISION= 2 CATEGORIES= graphics geography MASTER_SITES= https://qgis.org/downloads/ MAINTAINER= rhurlin@FreeBSD.org COMMENT= Free and Open Source Geographic Information System WWW= https://qgis.org/en/site/ LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/doc/LICENSE BUILD_DEPENDS= gpsbabel>=1.7.0:astro/gpsbabel \ opencl>=0:devel/opencl \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}cycler>=0.11.0:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.2:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.18.2:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httplib2>=0.20.2:www/py-httplib2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>=0.18.1:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.1.2:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}markupsafe>=2.1.1:textproc/py-markupsafe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=4.0.3:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}OWSLib>=0.27.2:graphics/py-OWSLib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pbr>=5.10.0:devel/py-pbr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>=22.2.2:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.14.3:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=2.13.0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproj>=3.4.0:graphics/py-pyproj@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2020.5:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.28.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.16.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlite3>=3.7.16:databases/py-sqlite3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4.1:devel/py-pyyaml@${PY_FLAVOR} LIB_DEPENDS= libabsl_log_internal_check_op.so:devel/abseil \ libdraco.so:archivers/draco \ libexiv2.so:graphics/exiv2 \ libexpat.so:textproc/expat2 \ libfreexl.so:textproc/freexl \ libgdal.so:graphics/gdal \ libgeos.so:graphics/geos \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libminizip.so:archivers/minizip \ libnetcdf.so:science/netcdf \ libOpenCL.so:devel/ocl-icd \ libpdalcpp.so:math/pdal \ libproj.so:graphics/proj \ libprotobuf-lite.so:devel/protobuf \ libqca-qt5.so:devel/qca@qt5 \ libqscintilla2_qt5.so:devel/qscintilla2@qt5 \ libqt5keychain.so:security/qtkeychain@qt5 \ libqwt.so:x11-toolkits/qwt6@qt5 \ librttopo.so:devel/librttopo \ libspatialite.so:databases/spatialite \ libsz.so:science/libaec \ libxerces-c.so:textproc/xerces-c3 \ libzip.so:archivers/libzip \ libzstd.so:archivers/zstd RUN_DEPENDS= astyle:devel/astyle \ opencl>=0:devel/opencl \ ${PYTHON_PKGNAMEPREFIX}black>=22.10:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cycler>=0.11.0:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.2:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fiona>=1.8.21:graphics/py-fiona@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.18.2:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gdal>=3.5.2:graphics/py-gdal@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geojson>=2.3.0:devel/py-geojson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geopandas>=0.11.1:graphics/py-geopandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httplib2>=0.20.2:www/py-httplib2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>=0.18.1:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=3.1.2:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}laspy>=2.5.1:misc/py-laspy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}markupsafe>=2.1.1:textproc/py-markupsafe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=4.0.3:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nbformat>=5.7.0:devel/py-nbformat@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>=1.6.2:science/py-netCDF4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.8.8:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nltk>=3.7:textproc/py-nltk@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}OWSLib>=0.27.2:graphics/py-OWSLib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pbr>=5.10.0:devel/py-pbr@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pip>=22.2.2:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.14.3:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.9.2:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psycopg2>=2.9.4:databases/py-psycopg2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=2.13.0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproj>=3.4.0:graphics/py-pyproj@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyrsgis>=0.4.1:graphics/py-pyrsgis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2020.5:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rasterio>=1.3.2:graphics/py-rasterio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.28.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.19.3:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.1.3:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}shapely>=1.8.5:devel/py-shapely@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.16.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlite3>=3.7.16:databases/py-sqlite3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}termcolor>=2.1.0:devel/py-termcolor@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xcffib>=0.11.1:x11/py-xcffib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xlrd>=2.0.1:textproc/py-xlrd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4.1:devel/py-pyyaml@${PY_FLAVOR} ### Fortran is needed by numpy, GRASS, etc. USES= bison cmake compiler:features desktop-file-utils \ fortran gl gmake gnome iconv pgsql pyqt:5 python qt:5 \ shebangfix sqlite:3 tar:bz2 USE_GL= gl USE_GNOME= libxml2 USE_LDCONFIG= yes USE_PYQT= pyqt5 pysip qscintilla2 qtbuilder:build sip:build webengine USE_QT= 3d buildtools:build core concurrent dbus declarative \ designer:build qdoc:build gamepad gui linguist:build location \ multimedia network printsupport qmake:build script serialport \ sql sql-pgsql sql-sqlite3 svg testlib uitools:build \ webchannel webengine widgets xml SHEBANG_FILES= src/plugins/grass/scripts/*.py # Python_EXECUTABLE: Use the default version if multiple Pythons are available CMAKE_ARGS+= -DCMAKE_BUILD_TYPE:STRING=Release \ -DHAVE_PGCONFIG=1 \ -DPYRCC_PROGRAM:FILEPATH=${LOCALBASE}/bin/pyrcc5-${PYTHON_VER} \ -DPYUIC_PROGRAM:FILEPATH=${LOCALBASE}/bin/pyuic5-${PYTHON_VER} \ -DPython_EXECUTABLE=${PYTHON_CMD} \ -DQSCI_SIP_DIR:PATH=${PYQT_SIPDIR}/Qsci \ -DQWT_INCLUDE_DIR:PATH=${LOCALBASE}/include/qt5/qwt6 \ -DQWT_LIBRARY:FILEPATH=${LOCALBASE}/lib/qt5/libqwt.so \ -DQGIS_MANUAL_SUBDIR:PATH=share/man # [2025-10-25] Use internal spatialindex, as the one in the ports is too new: # -- Found Spatialindex: /usr/local/lib/libspatialindex.so (2.1.0) # CMake Error at CMakeLists.txt:460 (message): # Cannot build QGIS using libspatialindex >= 2.1, see # https://github.com/libspatialindex/libspatialindex/issues/276 CMAKE_ON= USE_OPENCL WITH_ASTYLE WITH_BINDINGS WITH_COPC \ WITH_CUSTOM_WIDGETS WITH_DRACO WITH_EPT \ WITH_INTERNAL_LAZPERF WITH_INTERNAL_MDAL \ WITH_POSTGRESQL WITH_QTWEBENGINE WITH_INTERNAL_SPATIALINDEX CMAKE_OFF= BUILD_WITH_QT6 ENABLE_TESTS USE_CCACHE WITH_QTWEBKIT \ WITH_QWTPOLAR CONFLICTS_INSTALL= qgis-ltr PLIST_SUB= DISTVERSION=${PORTVERSION} .if !defined(MAINTAINER_MODE) CMAKE_ARGS+= -Wno-dev CMAKE_OFF+= SUPPRESS_QT_WARNINGS .endif OPTIONS_DEFINE= SERVER GRASS OPTIONS_DEFAULT= SERVER GRASS NO_OPTIONS_SORT= yes OPTIONS_SUB= yes GRASS_DESC= Add GRASS GIS to processing tools SERVER_DESC= Enable QGIS server GRASS_BUILD_DEPENDS= grass8:databases/grass8 GRASS_RUN_DEPENDS= ${GRASS_BUILD_DEPENDS} GRASS_CMAKE_BOOL= WITH_GRASS8 SERVER_LIB_DEPENDS= libfcgi.so:www/fcgi SERVER_CMAKE_BOOL= WITH_SERVER WITH_SERVER_PLUGINS WITH_QSPATIALITE .include pre-patch: # Only PostgreSQL Client headers, not Server @${REINPLACE_CMD} -e 's|set(POSTGRES_INCLUDE_DIR \$${PostgreSQL_INCLUDE_DIRS})|set(POSTGRES_INCLUDE ${LOCALBASE}/include)|g' \ ${WRKSRC}/cmake/FindPostgres.cmake post-patch: @${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \ ${WRKSRC}/cmake/FindGRASS.cmake # On i386, '-mllvm -inline-threshold=128' does not build under all circumstances # See bugs 242557 and 241687. .if ${OPSYS} == FreeBSD && ${ARCH} == "i386" @${REINPLACE_CMD} -e 's|"-mllvm -inline-threshold=128"|"-O1"|g' \ ${WRKSRC}/src/core/CMakeLists.txt .endif pre-configure: ${MKDIR} ${CONFIGURE_WRKSRC}/bin && ${LN} -s ${PYTHON_CMD} ${CONFIGURE_WRKSRC}/bin/python3 post-install: @${RM} ${STAGEDIR}${DATADIR}/python/pytz/tzfile.py.bak @${FIND} ${STAGEDIR}${LOCALBASE} -name "__pycache__" -delete @${RM} /tmp/srs.db check: @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check .include diff --git a/graphics/vigra/Makefile b/graphics/vigra/Makefile index 7aef68a7b9d9..4b8ab35f14d8 100644 --- a/graphics/vigra/Makefile +++ b/graphics/vigra/Makefile @@ -1,76 +1,76 @@ PORTNAME= vigra DISTVERSIONPREFIX= Version- DISTVERSION= 1-12-3 PORTREVISION= 1 CATEGORIES= graphics MAINTAINER= fuz@FreeBSD.org COMMENT= VIGRA stands for "Vision with Generic Algorithms" WWW= https://ukoethe.github.io/vigra/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libImath.so:math/Imath \ libsz.so:science/libaec USES= cmake compiler:c++14-lang python:run shebangfix USE_GITHUB= yes GH_ACCOUNT= ukoethe USE_LDCONFIG= yes CFLAGS+= -I${LOCALBASE}/include/Imath CMAKE_ARGS= -DDEPENDENCY_SEARCH_PREFIX:PATH=${LOCALBASE} \ -DDOCINSTALL:PATH=${DOCSDIR_REL} SHEBANG_FILES= config/vigra-config.in OPTIONS_DEFINE= HDF5 OPENEXR NUMPY DOCS FFTW OPTIONS_DEFAULT= HDF5 OPENEXR FFTW ${OPTIONS_GROUP_IMAGEFORMATS} OPTIONS_GROUP= IMAGEFORMATS OPTIONS_GROUP_IMAGEFORMATS= PNG JPEG TIFF OPTIONS_SUB= yes HDF5_CFLAGS= -DH5_USE_110_API=1 HDF5_CMAKE_BOOL= WITH_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 OPENEXR_CMAKE_BOOL= WITH_OPENEXR OPENEXR_LIB_DEPENDS= libOpenEXR.so:graphics/openexr NUMPY_DESC= NumPy mathematical computing (USE Fortran/GCC47+) NUMPY_CMAKE_BOOL= WITH_VIGRANUMPY NUMPY_USES= compiler:gcc-c++11-lib python:build NUMPY_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} NUMPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} NUMPY_LIB_DEPENDS= ${PY_BOOST} # On FreeBSD < 11 libc++ lacks support for sized delete operators. # GCC dropped the builtin version of these operators in 6+ by # defaulting to gnu++14. Force c++11 instead. # For a more detailed discussion see: # https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=219484 NUMPY_CXXFLAGS= -std=gnu++11 PNG_CMAKE_BOOL= WITH_PNG PNG_LIB_DEPENDS= libpng.so:graphics/png JPEG_CMAKE_BOOL= WITH_JPEG JPEG_USES= jpeg TIFF_CMAKE_BOOL= WITH_TIFF TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff FFTW_CMAKE_BOOL= WITH_FFTW FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float post-package-NUMPY-on: @${ECHO} "" @${ECHO} "* BEWARE!" @${ECHO} "* Using py-NumPY implies Fortran and GCC 4.7+ as hard dependencies" @${ECHO} "* and require all ports, depending on vigra, to set USE_GCC=yes" @${ECHO} "" .include diff --git a/math/Imath/Makefile b/math/Imath/Makefile index 1f075df542d2..7a363a8be316 100644 --- a/math/Imath/Makefile +++ b/math/Imath/Makefile @@ -1,64 +1,64 @@ # Based on the graphics/ilmbase port that was done by: nork@FreeBSD.org PORTNAME= Imath PORTVERSION= 3.2.2 PORTREVISION= 3 CATEGORIES= math devel graphics MASTER_SITES= https://github.com/AcademySoftwareFoundation/${PORTNAME}/releases/download/v${PORTVERSION}/ \ LOCAL/mandree/ # to verify: 'make makesum' and download .sigstore.json to working directory, then: # sigstore verify github --cert-identity \ # https://github.com/AcademySoftwareFoundation/Imath/.github/workflows/release-sign.yml@refs/tags/v3.2.2 \ # /usr/ports/distfiles/Imath-3.2.2.tar.gz --bundle Imath-3.2.2.tar.gz.sigstore.json MAINTAINER= mandree@FreeBSD.org COMMENT= C++/Python lib of 2D/3D vector, matrix, math ops for computer graphics WWW= https://github.com/AcademySoftwareFoundation/Imath/ LICENSE= BSD3CLAUSE USES= cmake compiler:c++14-lang pathfix pkgconfig USE_LDCONFIG= yes CMAKE_ARGS+= -DCMAKE_DEBUG_POSTFIX= \ -DCMAKE_INSTALL_PREFIX=${PREFIX} PATCH_STRIP= -p1 PLIST_SUB= MAJORVER=${_MAJORVER} \ VER=${_VER} \ REL=${_REL} \ PYVER=${PYTHON_VER:S/./_/} PORTDOCS= README.md OPTIONS_DEFINE= DOCS LARGE_STACK PYTHON OPTIONS_DEFAULT=DOCS PYTHON OPTIONS_SUB= yes LARGE_STACK_DESC= Enable sys-dependent large stack optimizations LARGE_STACK_CMAKE_BOOL= IMATH_ENABLE_LARGE_STACK -PYTHON_BUILD_DEPENDS= ${PYNUMPY} +PYTHON_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_LIB_DEPENDS= ${PY_BOOST} \ libboost_container.so:devel/boost-libs -PYTHON_RUN_DEPENDS= ${PYNUMPY} +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_USES= python PYTHON_CMAKE_BOOL= PYTHON _MAJORVER= 3_2 _VER= 30 _REL= ${PORTVERSION} post-install: .for l in libImath ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/${l}-${_MAJORVER}.so .endfor @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} do-test: cd ${BUILD_WRKSRC} && ctest -j ${MAKE_JOBS_NUMBER} .include diff --git a/math/gau2grid/Makefile b/math/gau2grid/Makefile index 830f77cad108..79540a0b1bde 100644 --- a/math/gau2grid/Makefile +++ b/math/gau2grid/Makefile @@ -1,27 +1,27 @@ PORTNAME= gau2grid DISTVERSIONPREFIX= v DISTVERSION= 2.0.7 PORTREVISION= 1 CATEGORIES= math python MAINTAINER= yuri@FreeBSD.org COMMENT= Fast computation of a gaussian and its derivative on a grid WWW= https://github.com/dgasmith/gau2grid LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= amd64 i386 powerpc64 powerpc64le ONLY_FOR_ARCHS_REASON= BUG: ValueError: descr is not a valid dtype descriptor: '=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} USES= cmake compiler:c11 python:build # C code build depends on python to generate some headers USE_GITHUB= yes GH_ACCOUNT= dgasmith USE_LDCONFIG= yes CMAKE_OFF= ENABLE_XHOST .include diff --git a/math/mathgl/Makefile b/math/mathgl/Makefile index 60827df065ce..f90e30951b74 100644 --- a/math/mathgl/Makefile +++ b/math/mathgl/Makefile @@ -1,93 +1,93 @@ PORTNAME= mathgl DISTVERSION= 2.5 PORTREVISION= 8 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/ MAINTAINER= yuri@FreeBSD.org COMMENT= Library for high-quality scientific data visualization WWW= https://mathgl.sourceforge.net LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_armv7= error: unknown FP unit 'sse', see https://sourceforge.net/p/mathgl/bugs/49/ LIB_DEPENDS= libgif.so:graphics/giflib \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libhpdf.so:print/libharu \ libltdl.so:devel/libltdl \ libpng.so:graphics/png \ libsz.so:science/libaec USES= cmake compiler:c++11-lang dos2unix gettext-runtime gl jpeg xorg DOS2UNIX_GLOB= *.cpp *.h USE_GL= gl glu glut USE_LDCONFIG= yes USE_XORG= xi xmu .for v in double gif glut gsl hdf5 jpeg ltdl mgl2 opengl pdf png zlib CMAKE_ARGS+= -Denable-${v}=ON .endfor .for v in doc-info doc-html lgpl mgltex CMAKE_ARGS+= -Denable-${v}=OFF .endfor CXXFLAGS+= --std=c++14 PLIST_SUB= SHLIB_VER=7.6.0 OPTIONS_DEFINE= PYTHON MPI OPTIONS_DEFAULT= QT5 OPTIONS_GROUP= GRAPHICS OPTIONS_GROUP_GRAPHICS= QT5 FLTK WXGTK OPTIONS_RADIO= THREADS OPTIONS_RADIO_THREADS= PTHREADS OPENMP OPTIONS_SUB= yes FLTK_DESC= Enable fltk widget GRAPHICS_DESC= Graphics support OPENMP_DESC= Parallel processing support via OpenMP (broken, cmake bug) PTHREADS_DESC= Enable POSIX threads support (broken, fix pending release) PYTHON_CMAKE_BOOL= enable-python PYTHON_BUILD_DEPENDS= swig:devel/swig \ - ${PYNUMPY} -PYTHON_RUN_DEPENDS= ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_BROKEN= Python option needs to be fixed: lgpl needs to be enabled for it MPI_CMAKE_BOOL= enable-mpi MPI_LIB_DEPENDS= libmpi.so:net/openmpi QT5_CMAKE_BOOL= enable-qt5 QT5_USE= QT=core,gui,opengl,printsupport,widgets,buildtools:build,qmake:build QT5_USES= desktop-file-utils qt:5 shared-mime-info FLTK_CMAKE_BOOL= enable-fltk FLTK_LIB_DEPENDS= libfltk.so:x11-toolkits/fltk FLTK_USE= XORG=ice,sm,x11,xext WXGTK_CMAKE_BOOL= wx WXGTK_USE= WX=3.0+ OPENMP_CMAKE_BOOL= enable-openmp PTHREADS_CMAKE_BOOL= enable-pthread .include .if ! ${PORT_OPTIONS:MFLTK} && ! ${PORT_OPTIONS:MQT5} PLIST_SUB+= FLTK_OR_QT5="@comment " .else PLIST_SUB+= FLTK_OR_QT5="" .endif .if ${PORT_OPTIONS:MFLTK} && ${PORT_OPTIONS:MQT5} PLIST_SUB+= FLTK_AND_QT5="" .else PLIST_SUB+= FLTK_AND_QT5="@comment " .endif .include diff --git a/math/nlopt/Makefile b/math/nlopt/Makefile index ed491099db70..93e87de09dee 100644 --- a/math/nlopt/Makefile +++ b/math/nlopt/Makefile @@ -1,53 +1,53 @@ PORTNAME= nlopt DISTVERSIONPREFIX= v DISTVERSION= 2.10.1 PORTREVISION= 1 CATEGORIES= math MAINTAINER= rhurlin@FreeBSD.org COMMENT= Nonlinear optimization library WWW= https://nlopt.readthedocs.io/ \ https://github.com/stevengj/nlopt/ LICENSE= LGPL21 MIT LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_armv6= fails to package: Unable to access file site-packages/_nlopt.a:No such file or directory BROKEN_armv7= fails to package: Unable to access file site-packages/_nlopt.a:No such file or directory FLAVORS= full minimal FLAVOR?= ${FLAVORS:[1]} -full_BUILD_DEPENDS= ${PYNUMPY} \ +full_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ swig:devel/swig full_LIB_DEPENDS= liboctave.so:math/octave -full_RUN_DEPENDS= ${PYNUMPY} +full_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} full_CONFLICTS_INSTALL= ${PORTNAME}-minimal minimal_PKGNAMESUFFIX= -minimal minimal_CONFLICTS_INSTALL= ${PORTNAME} USES= cmake:testing USE_GITHUB= yes GH_ACCOUNT= stevengj USE_LDCONFIG= yes # 'make test': 100% tests passed, 0 tests failed out of 83 CMAKE_TESTING_ON= NLOPT_TESTS .if ${FLAVOR} == full USES+= guile:3.0,alias localbase octave:env pkgconfig python # Because guile-config-3.0 crashes, nlopt avoids this by using # files/patch-cmake_FindGuile.cmake and setting GUILE_EXECUTABLE # and GUILE_CONFIG_EXECUTABLE MAKE_ENV+= GUILE_EXECUTABLE=${PREFIX}/bin/guile-3.0 \ GUILE_CONFIG_EXECUTABLE=${PREFIX}/bin/guile-config-3.0 CMAKE_OFF= NLOPT_JAVA GNU_HOST= ${ARCH}-portbld-freebsd${OSREL} PLIST= ${PKGDIR}/pkg-plist.${FLAVOR} PLIST_SUB= GNU_HOST=${GNU_HOST} OCTAVE_VERSION=${OCTAVE_VERSION} .elif ${FLAVOR} == minimal CMAKE_OFF= NLOPT_GUILE NLOPT_JAVA NLOPT_OCTAVE NLOPT_PYTHON NLOPT_SWIG .endif .include diff --git a/math/ntpoly/Makefile b/math/ntpoly/Makefile index 34fc117a83d9..90c1d76cf27d 100644 --- a/math/ntpoly/Makefile +++ b/math/ntpoly/Makefile @@ -1,60 +1,60 @@ PORTNAME= NTPoly DISTVERSIONPREFIX= ${PORTNAME:tl}-v DISTVERSION= 3.1.1 PORTREVISION= 2 CATEGORIES= math MAINTAINER= thierry@FreeBSD.org COMMENT= Library for computing the functions of sparse matrices WWW= https://william-dawson.github.io/NTPoly LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= swig>0:devel/swig -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ bash:shells/bash \ ${PYTHON_PKGNAMEPREFIX}mpi4py-mpich>0:net/py-mpi4py-mpich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USE_GITHUB= yes GH_ACCOUNT= william-dawson USES= blaslapack:openblas cmake fortran mpi python FFLAGS+= -fopenmp -fallow-argument-mismatch CXXFLAGS+= -fopenmp CMAKE_ARGS= -DCMAKE_TOOLCHAIN_FILE=${TOOLCHAIN} CMAKE_ON= BUILD_SHARED_LIBS USE_LDCONFIG= yes TOOLCHAIN= ${WRKSRC}/Targets/${OPSYS}.cmake NTPLIBS= ${PORTNAME} ${PORTNAME}CPP ${PORTNAME}Wrapper pre-configure: ${ECHO_CMD} 'set(CMAKE_SYSTEM_NAME ${OPSYS})' > ${TOOLCHAIN} ${ECHO_CMD} 'set(CMAKE_C_COMPILER ${MPICC})' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(CMAKE_Fortran_COMPILER ${MPIFC})' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(CMAKE_CXX_COMPILER ${MPICXX})' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(TOOLCHAIN_LIBS "${BLASLIB}")' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(F_TOOLCHAINFLAGS_RELEASE "${FFLAGS}")' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(CXX_TOOLCHAINFLAGS_DEBUG "${CXXFLAGS}")' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(F_TOOLCHAINFLAGS_DEBUG "${FFLAGS}")' >> ${TOOLCHAIN} ${ECHO_CMD} 'set(TARGET_SUPPORTS_SHARED_LIBS Yes)' >> ${TOOLCHAIN} post-install: .for l in ${NTPLIBS} ${MV} ${STAGEDIR}${PREFIX}/lib/lib${l}.so \ ${STAGEDIR}${PREFIX}/lib/lib${l}.so.0 ${RLN} ${STAGEDIR}${PREFIX}/lib/lib${l}.so.0 \ ${STAGEDIR}${PREFIX}/lib/lib${l}.so .endfor do-test: @${ECHO_MSG} "/!\\ WARNING /!\\" @${ECHO_MSG} "net/py-mpi4py must be built against MPICH!" cd ${BUILD_WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include diff --git a/math/openturns/Makefile b/math/openturns/Makefile index e8f15a0fb7ee..ad8af6bac237 100644 --- a/math/openturns/Makefile +++ b/math/openturns/Makefile @@ -1,102 +1,102 @@ PORTNAME= openturns DISTVERSIONPREFIX= v DISTVERSION= 1.25.1 PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Uncertainty treatment library WWW= https://openturns.github.io/www/ \ https://github.com/openturns/openturns LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/COPYING.LESSER BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ flex:textproc/flex \ spectra>0:math/spectra LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libblas.so:math/blas \ libbonmin.so:math/bonmin \ libboost_serialization.so:devel/boost-libs \ libcamd.so:math/suitesparse-camd \ libceres.so:math/ceres-solver \ libCbc.so:math/cbc \ libccolamd.so:math/suitesparse-ccolamd \ libCgl.so:math/cgl \ libcholmod.so:math/suitesparse-cholmod \ libClp.so:math/clp \ libcminpack.so:math/cminpack \ libcoinasl.so:math/asl \ libCoinUtils.so:math/coinutils \ libcolamd.so:math/suitesparse-colamd \ libcxsparse.so:math/suitesparse-cxsparse \ libdlib.so:science/dlib-cpp \ libgif.so:graphics/giflib \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libgmp.so:math/gmp \ libhdf5_cpp.so:science/hdf5 \ libipopt.so:math/ipopt \ liblapack.so:math/lapack \ libmpc.so:math/mpc \ libmpfr.so:math/mpfr \ libnlopt.so:math/nlopt \ libOsi.so:math/osi \ libpagmo.so:science/pagmo2 \ libpng16.so:graphics/png \ libprimesieve.so:math/primesieve \ libspqr.so:math/suitesparse-spqr \ libsuitesparseconfig.so:math/suitesparse-config \ libsz.so:science/libaec \ libtbb.so:devel/onetbb USES= bison blaslapack:openblas cmake eigen:3 gnome jpeg llvm:18 localbase:ldflags pkgconfig sqlite xorg # compiler:c++17-lang USE_GITHUB= yes USE_GNOME= libxml2 USE_XORG= ice sm x11 xau xcb xdmcp xext USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES=${LOCALBASE}/lib/libopenblas.so \ -DOPENTURNS_EXAMPLE_PATH:STRING=share/examples/openturns \ -DOPENTURNS_DOC_PATH:STRING=share/doc/openturns CMAKE_OFF= USE_DOXYGEN USE_SPHINX CMAKE_OFF+= USE_HMAT # broken with hmat-oss-1.7.1: https://github.com/openturns/openturns/issues/1868 CMAKE_OFF+= USE_CERES # ceres-solver-2.2.0 fails to be found by cmake, see https://github.com/ceres-solver/ceres-solver/issues/1023 TEST_TARGET= check # 10 tests are known to fail: https://github.com/openturns/openturns/issues/1919 OPTIONS_DEFINE= PYTHON EXAMPLES OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes PYTHON_USES= python PYTHON_CMAKE_BOOL= BUILD_PYTHON PYTHON_CMAKE_ON= -DSWIG_EXECUTABLE=${LOCALBASE}/bin/swig -PYTHON_PY_DEPENDS= ${PYNUMPY} \ +PYTHON_PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}chaospy>0:math/py-chaospy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.3.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} PYTHON_BUILD_DEPENDS= swig:devel/swig \ ${PYTHON_PY_DEPENDS} PYTHON_RUN_DEPENDS= ${PYTHON_PY_DEPENDS} PORTEXAMPLES= * #LLVM_VERSION= 12 # workaround for clang-13 crash: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=261341 # use clang from ports because cmake can't find base llvm for JIT #BUILD_DEPENDS+= clang${LLVM_VERSION}:devel/llvm${LLVM_VERSION} #RUN_DEPENDS+= clang${LLVM_VERSION}:devel/llvm${LLVM_VERSION} #CPP= clang-cpp${LLVM_VERSION} #CC= clang${LLVM_VERSION} #CXX= clang++${LLVM_VERSION} post-install: @${RM} -r ${STAGEDIR}${DOCSDIR} # tests as of 1.25.1: 99% tests passed, 1 tests failed out of 539, the test cppcheck_Normal_large was killed because it used too much memory .include diff --git a/math/py-CyLP/Makefile b/math/py-CyLP/Makefile index 79799f164468..0088b6b9e703 100644 --- a/math/py-CyLP/Makefile +++ b/math/py-CyLP/Makefile @@ -1,45 +1,45 @@ PORTNAME= CyLP DISTVERSIONPREFIX= v DISTVERSION= 0.92.3 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface to CLP, CBC, and CGL to solve LPs and MIPs WWW= https://github.com/coin-or/CyLP LICENSE= CPL10 LICENSE_NAME= Common Public License Version 1.0 LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libblas.so:math/blas \ libCbc.so:math/cbc \ libCgl.so:math/cgl \ libClp.so:math/clp \ libCoinUtils.so:math/coinutils \ liblapack.so:math/lapack \ libOsi.so:math/osi -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.10.0:science/py-scipy@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= autoplist cython pep517 pytest USE_GITHUB= yes GH_ACCOUNT= coin-or MAKE_ENV= COIN_INSTALL_DIR=${LOCALBASE} TEST_WRKSRC= ${WRKSRC}/cylp TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cylp/cy/Cy*.so .include diff --git a/math/py-GridDataFormats/Makefile b/math/py-GridDataFormats/Makefile index c0d52b83fc8c..76bd7a25d81e 100644 --- a/math/py-GridDataFormats/Makefile +++ b/math/py-GridDataFormats/Makefile @@ -1,26 +1,26 @@ PORTNAME= GridDataFormats DISTVERSION= 1.0.2 PORTREVISION= 2 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Handle data on a grid: NumPy n-dimensional arrays WWW= https://github.com/MDAnalysis/GridDataFormats LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mrcfile>0:biology/py-mrcfile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist concurrent pytest USE_GITHUB= yes GH_ACCOUNT= MDAnalysis NO_ARCH= yes .include diff --git a/math/py-POT/Makefile b/math/py-POT/Makefile index 07a8a12b01e5..13b79080aaa6 100644 --- a/math/py-POT/Makefile +++ b/math/py-POT/Makefile @@ -1,30 +1,30 @@ PORTNAME= POT DISTVERSION= 0.9.3 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Optimal Transport Library WWW= https://pythonot.github.io/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.6:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest # expects newer pytest than 7.4.4: AttributeError: module pytest has no attribute skip_backend TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/ot/lp/emd_wrap${PYTHON_TAG}.so .include diff --git a/math/py-Py-BOBYQA/Makefile b/math/py-Py-BOBYQA/Makefile index 55c5673722d8..d1bfde821b8e 100644 --- a/math/py-Py-BOBYQA/Makefile +++ b/math/py-Py-BOBYQA/Makefile @@ -1,27 +1,27 @@ PORTNAME= Py-BOBYQA DISTVERSION= 1.5.0 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/:tl}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Flexible derivative-free solver for general objective minimization WWW= https://numericalalgorithmsgroup.github.io/pybobyqa/build/html/index.html LICENSE= GPLv3 BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.17:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.17:science/py-scipy@${PY_FLAVOR} # extras: trustregion USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/math/py-PySCIPOpt/Makefile b/math/py-PySCIPOpt/Makefile index 5ba0bf778c25..513306fd394a 100644 --- a/math/py-PySCIPOpt/Makefile +++ b/math/py-PySCIPOpt/Makefile @@ -1,36 +1,36 @@ PORTNAME= PySCIPOpt DISTVERSIONPREFIX= v DISTVERSION= 5.6.0 PORTREVISION= 1 CATEGORIES= math python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface and modeling environment for SCIP WWW= https://github.com/SCIP-Interfaces/PySCIPOpt LICENSE= MIT LIB_DEPENDS= libscip.so:math/SCIP -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} USES= localbase python USE_PYTHON= autoplist cython distutils pytest # 1 test fails, see https://github.com/scipopt/PySCIPOpt/issues/840 USE_GITHUB= yes GH_ACCOUNT= scipopt TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyscipopt/scip*.so # tests as of 5.6.0: # Results (26.54s): # 330 passed # 11 xfailed # 105 skipped .include diff --git a/math/py-SQNomad/Makefile b/math/py-SQNomad/Makefile index a817ed159f24..a3d5c1681905 100644 --- a/math/py-SQNomad/Makefile +++ b/math/py-SQNomad/Makefile @@ -1,32 +1,32 @@ PORTNAME= SQNomad DISTVERSION= 0.2.3 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Blackbox optimization software WWW= https://www.gerad.ca/nomad/ LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SQCommon>0:misc/py-SQCommon@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/libsqnomad${PYTHON_TAG}.so # there are a lot of errors during build stemming from the numpy code, for example: # cc: error: unknown argument: '-mavx5124fmaps' # cc: error: unknown argument: '-mavx5124vnniw' # but these erros are in the test coe nd they don't break the build .include diff --git a/math/py-algopy/Makefile b/math/py-algopy/Makefile index 4647edd49615..3c7ac3a8d768 100644 --- a/math/py-algopy/Makefile +++ b/math/py-algopy/Makefile @@ -1,20 +1,20 @@ PORTNAME= algopy DISTVERSION= 0.5.7 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Algorithmic Differentiation (AD) and Taylor polynomial approximations WWW= https://pythonhosted.org/algopy/ LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python zip USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-ambit/Makefile b/math/py-ambit/Makefile index 01431d123ed3..4472f9ef2c75 100644 --- a/math/py-ambit/Makefile +++ b/math/py-ambit/Makefile @@ -1,45 +1,45 @@ PORTNAME= ambit DISTVERSIONPREFIX= v DISTVERSION= 0.7.1 PORTREVISION= 4 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for tensor product calculations WWW= https://github.com/jturney/ambit LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/../COPYING -PY_DEPENDS= ${PYNUMPY} +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= pybind11>0:devel/pybind11 \ ${PY_DEPENDS} LIB_DEPENDS= libambit.so:math/ambit \ libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas RUN_DEPENDS= ${PY_DEPENDS} USES= cmake compiler:c++17-lang python:build USE_PYTHON= flavors pytest USE_GITHUB= yes GH_ACCOUNT= jturney WRKSRC_SUBDIR= pyambit CMAKE_ARGS= -DPYMOD_INSTALL_LIBDIR:STRING=/python${_PYTHON_VERSION}/site-packages \ -DFREEBSD_PYTHON_VER=${PYTHON_VER} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC} post-install: # remove share/cmake/ambit/ambitTargets-Python-%%CMAKE_BUILD_TYPE%%.cmake, and tests @${RM} -r \ ${STAGEDIR}${PREFIX}/share \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/ambit/tests pre-test: @${RM} ${WRKSRC}/__init__.py # tests fail with __init__.py .include diff --git a/math/py-annoy/Makefile b/math/py-annoy/Makefile index 90383cb91414..f358fe841444 100644 --- a/math/py-annoy/Makefile +++ b/math/py-annoy/Makefile @@ -1,38 +1,38 @@ PORTNAME= annoy DISTVERSIONPREFIX= v DISTVERSION= 1.17.3 PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Approximate Nearest Neighbors algorithm WWW= https://github.com/spotify/annoy LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # tests fail because nose is broken USE_GITHUB= yes GH_ACCOUNT= spotify TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/annoy/annoylib${PYTHON_TAG}.so do-test: cd ${TEST_WRKSRC} && \ ${ECHO} "saving data" && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test-save.py && \ ${ECHO} "loading data" && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test-load.py && \ ${ECHO} "tests succeeded" .include diff --git a/math/py-apgl/Makefile b/math/py-apgl/Makefile index 37ea391e682e..fdddfcb72a1b 100644 --- a/math/py-apgl/Makefile +++ b/math/py-apgl/Makefile @@ -1,21 +1,21 @@ PORTNAME= apgl PORTVERSION= 0.8.1 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Fast python graph library with some machine learning features WWW= http://packages.python.org/apgl/ LICENSE= GPLv3 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0.7.0:science/py-scipy@${PY_FLAVOR} RUN_DEPENDS:= ${BUILD_DEPENDS} USES= python USE_PYTHON= autoplist distutils .include diff --git a/math/py-arviz/Makefile b/math/py-arviz/Makefile index acd605820485..fe64c69f2d58 100644 --- a/math/py-arviz/Makefile +++ b/math/py-arviz/Makefile @@ -1,49 +1,49 @@ PORTNAME= arviz DISTVERSIONPREFIX= v DISTVERSION= 0.23.1 PORTREVISION= 1 CATEGORIES= math python #MASTER_SITES= PYPI # missing test files PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for exploratory analysis of Bayesian models WWW= https://python.arviz.org/en/stable/ \ https://github.com/arviz-devs/arviz LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dm-tree>=0.1.8:devel/py-dm-tree@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=2.1.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.11.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5netcdf>=1.0.2:science/py-h5netcdf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.1.0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray>=2023.7.0:devel/py-xarray@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray-einstats>=0.3:devel/py-xarray-einstats@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} # ${PYTHON_PKGNAMEPREFIX}pyro>0:devel/py-pyro@${PY_FLAVOR} \ # ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= arviz-devs NO_ARCH= yes TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ DISPLAY=${DISPLAY} \ XAUTHORITY=${XAUTHORITY} # tests as of 0.23.1: 2932 passed, 30 skipped, 147 warnings, 614 errors in 48.34s .include diff --git a/math/py-autograd/Makefile b/math/py-autograd/Makefile index 4bda6058f026..05c8f34c4ef3 100644 --- a/math/py-autograd/Makefile +++ b/math/py-autograd/Makefile @@ -1,24 +1,24 @@ PORTNAME= autograd DISTVERSION= 1.6.1 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rm@FreeBSD.org COMMENT= Efficiently computes derivatives of numpy code WWW= https://github.com/HIPS/autograd LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_SETUPTOOLS} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.15.2:devel/py-future@${PY_FLAVOR} USES= python USE_PYTHON= autoplist pep517 NO_ARCH= yes .include diff --git a/math/py-baycomp/Makefile b/math/py-baycomp/Makefile index 91eb484581ab..2e2f59572e29 100644 --- a/math/py-baycomp/Makefile +++ b/math/py-baycomp/Makefile @@ -1,33 +1,33 @@ PORTNAME= baycomp DISTVERSION= 1.0.3 PORTREVISION= 3 CATEGORIES= math python # statistics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for Bayesian comparison of classifiers WWW= https://github.com/janezd/baycomp LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.1.2:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.19.1:science/py-scipy@${PY_FLAVOR} #RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pystan>=3.4.0:math/py-pystan@${PY_FLAVOR} USES= localbase:ldflags python USE_PYTHON= distutils autoplist NO_ARCH= yes POST_PLIST= rm-tests-from-plist post-install: @${RM} -r ${STAGEDIR}${PYTHON_SITELIBDIR}/tests rm-tests-from-plist: @${REINPLACE_CMD} '/\/tests\//d' ${TMPPLIST} .include diff --git a/math/py-benford_py/Makefile b/math/py-benford_py/Makefile index e7b0cefe609c..6593cb6a3415 100644 --- a/math/py-benford_py/Makefile +++ b/math/py-benford_py/Makefile @@ -1,31 +1,31 @@ PORTNAME= benford_py DISTVERSIONPREFIX= v DISTVERSION= 0.5.0 PORTREVISION= 4 CATEGORIES= math python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for testing data sets with Benford's law WWW= https://github.com/milcent/benford_py LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist USE_GITHUB= yes GH_ACCOUNT= milcent NO_ARCH= yes post-extract: # https://github.com/milcent/benford_py/issues/48 ${TOUCH} ${WRKSRC}/README-pypi.md .include diff --git a/math/py-chaospy/Makefile b/math/py-chaospy/Makefile index 703c4128b036..df18b53b63c6 100644 --- a/math/py-chaospy/Makefile +++ b/math/py-chaospy/Makefile @@ -1,35 +1,35 @@ PORTNAME= chaospy DISTVERSIONPREFIX= v DISTVERSION= 4.3.11 PORTREVISION= 4 CATEGORIES= math python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Toolbox for performing uncertainty quantification WWW= https://github.com/jonathf/chaospy LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpoly>0:math/py-numpoly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= jonathf NO_ARCH= yes do-test: # tests hang: https://github.com/jonathf/chaospy/issues/406 @cd ${WRKSRC} && pytest --doctest-modules chaospy/ .include diff --git a/math/py-clarabel/Makefile b/math/py-clarabel/Makefile index ca24c511470e..c894f26617ae 100644 --- a/math/py-clarabel/Makefile +++ b/math/py-clarabel/Makefile @@ -1,300 +1,300 @@ PORTNAME= clarabel DISTVERSIONPREFIX= v DISTVERSION= 0.9.0 PORTREVISION= 16 CATEGORIES= math python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Clarabel conic interior point solver WWW= https://github.com/oxfordcontrol/Clarabel.rs LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.md BROKEN_i386= compilation fails, see https://github.com/sarah-ek/gemm/issues/30 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}maturin>=1.0:devel/py-maturin@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= cargo python USE_PYTHON= pep517 autoplist USE_GITHUB= yes GH_ACCOUNT= oxfordcontrol GH_PROJECT= Clarabel.rs CARGO_CRATES= accelerate-src-0.3.2 \ adler-1.0.2 \ aho-corasick-1.1.3 \ amd-0.2.2 \ android-tzdata-0.1.1 \ android_system_properties-0.1.5 \ anyhow-1.0.86 \ autocfg-1.3.0 \ base16ct-0.2.0 \ base64-0.22.1 \ bitflags-1.3.2 \ bitflags-2.5.0 \ blas-0.22.0 \ blas-src-0.10.0 \ blas-sys-0.7.1 \ block-buffer-0.10.4 \ bumpalo-3.16.0 \ bytemuck-1.16.1 \ bytemuck_derive-1.7.0 \ byteorder-1.5.0 \ cc-1.0.99 \ cfg-if-1.0.0 \ chrono-0.4.38 \ cmake-0.1.50 \ coe-rs-0.1.2 \ core-foundation-0.9.4 \ core-foundation-sys-0.8.6 \ cpufeatures-0.2.12 \ crc32fast-1.4.2 \ crossbeam-deque-0.8.5 \ crossbeam-epoch-0.9.18 \ crossbeam-utils-0.8.20 \ crunchy-0.2.2 \ crypto-common-0.1.6 \ darling-0.14.4 \ darling-0.20.9 \ darling_core-0.14.4 \ darling_core-0.20.9 \ darling_macro-0.14.4 \ darling_macro-0.20.9 \ dbgf-0.1.2 \ derive_builder-0.11.2 \ derive_builder-0.20.0 \ derive_builder_core-0.11.2 \ derive_builder_core-0.20.0 \ derive_builder_macro-0.11.2 \ derive_builder_macro-0.20.0 \ digest-0.10.7 \ directories-5.0.1 \ dirs-3.0.2 \ dirs-sys-0.3.7 \ dirs-sys-0.4.1 \ dyn-stack-0.10.0 \ either-1.12.0 \ enum-as-inner-0.6.0 \ enum_dispatch-0.3.13 \ equator-0.2.2 \ equator-macro-0.2.1 \ equivalent-1.0.1 \ errno-0.3.9 \ faer-0.19.0 \ faer-entity-0.19.0 \ fastrand-2.1.0 \ filetime-0.2.23 \ flate2-1.0.30 \ fnv-1.0.7 \ foreign-types-0.3.2 \ foreign-types-shared-0.1.1 \ form_urlencoded-1.2.1 \ gemm-0.18.0 \ gemm-c32-0.18.0 \ gemm-c64-0.18.0 \ gemm-common-0.18.0 \ gemm-f16-0.18.0 \ gemm-f32-0.18.0 \ gemm-f64-0.18.0 \ generic-array-0.14.7 \ getrandom-0.2.15 \ getset-0.1.2 \ half-2.4.1 \ hashbrown-0.14.5 \ heck-0.4.1 \ iana-time-zone-0.1.60 \ iana-time-zone-haiku-0.1.2 \ ident_case-1.0.1 \ idna-0.5.0 \ indexmap-2.2.6 \ indoc-2.0.5 \ intel-mkl-src-0.8.1 \ intel-mkl-tool-0.8.1 \ itertools-0.11.0 \ itoa-1.0.11 \ js-sys-0.3.69 \ lapack-0.19.0 \ lapack-src-0.10.0 \ lapack-sys-0.14.0 \ lazy_static-1.4.0 \ libc-0.2.155 \ libm-0.2.8 \ libredox-0.1.3 \ linux-raw-sys-0.4.14 \ lock_api-0.4.12 \ log-0.4.21 \ matrixcompare-0.3.0 \ matrixcompare-core-0.1.0 \ memchr-2.7.4 \ memoffset-0.9.1 \ miniz_oxide-0.7.4 \ nano-gemm-0.1.2 \ nano-gemm-c32-0.1.0 \ nano-gemm-c64-0.1.0 \ nano-gemm-codegen-0.1.0 \ nano-gemm-core-0.1.0 \ nano-gemm-f32-0.1.0 \ nano-gemm-f64-0.1.0 \ native-tls-0.2.12 \ netlib-src-0.8.0 \ npyz-0.8.3 \ num-bigint-0.4.5 \ num-complex-0.4.6 \ num-derive-0.2.5 \ num-integer-0.1.46 \ num-traits-0.2.19 \ oci-spec-0.6.5 \ ocipkg-0.2.9 \ once_cell-1.19.0 \ openblas-build-0.10.9 \ openblas-src-0.10.9 \ openssl-0.10.64 \ openssl-macros-0.1.1 \ openssl-probe-0.1.5 \ openssl-sys-0.9.102 \ option-ext-0.2.0 \ parking_lot-0.12.3 \ parking_lot_core-0.9.10 \ paste-1.0.15 \ percent-encoding-2.3.1 \ pest-2.7.10 \ pest_derive-2.7.10 \ pest_generator-2.7.10 \ pest_meta-2.7.10 \ pkg-config-0.3.30 \ portable-atomic-1.6.0 \ proc-macro-error-1.0.4 \ proc-macro-error-attr-1.0.4 \ proc-macro2-0.4.30 \ proc-macro2-1.0.85 \ pulp-0.18.21 \ py_literal-0.4.0 \ pyo3-0.20.3 \ pyo3-build-config-0.20.3 \ pyo3-ffi-0.20.3 \ pyo3-macros-0.20.3 \ pyo3-macros-backend-0.20.3 \ quote-0.6.13 \ quote-1.0.36 \ r-src-0.1.0 \ rand-0.8.5 \ rand_core-0.6.4 \ rand_distr-0.4.3 \ raw-cpuid-10.7.0 \ rayon-1.10.0 \ rayon-core-1.12.1 \ reborrow-0.5.5 \ redox_syscall-0.4.1 \ redox_syscall-0.5.2 \ redox_users-0.4.5 \ regex-1.10.5 \ regex-automata-0.4.7 \ regex-syntax-0.8.4 \ ring-0.17.8 \ rustix-0.38.34 \ rustls-0.22.4 \ rustls-native-certs-0.7.0 \ rustls-pemfile-2.1.2 \ rustls-pki-types-1.7.0 \ rustls-webpki-0.102.4 \ ryu-1.0.18 \ same-file-1.0.6 \ schannel-0.1.23 \ scopeguard-1.2.0 \ security-framework-2.11.0 \ security-framework-sys-2.11.0 \ seq-macro-0.3.5 \ serde-1.0.203 \ serde_derive-1.0.203 \ serde_json-1.0.117 \ serde_spanned-0.6.6 \ sha2-0.10.8 \ smallvec-1.13.2 \ spin-0.9.8 \ strsim-0.10.0 \ strsim-0.11.1 \ subtle-2.5.0 \ syn-0.15.44 \ syn-1.0.109 \ syn-2.0.66 \ sysctl-0.5.5 \ tar-0.4.41 \ target-lexicon-0.12.14 \ tempfile-3.10.1 \ thiserror-1.0.61 \ thiserror-impl-1.0.61 \ tinyvec-1.6.0 \ tinyvec_macros-0.1.1 \ toml-0.8.14 \ toml_datetime-0.6.6 \ toml_edit-0.22.14 \ typenum-1.17.0 \ ucd-trie-0.1.6 \ unicode-bidi-0.3.15 \ unicode-ident-1.0.12 \ unicode-normalization-0.1.23 \ unicode-xid-0.1.0 \ unindent-0.2.3 \ untrusted-0.9.0 \ ureq-2.9.7 \ url-2.5.2 \ uuid-1.8.0 \ vcpkg-0.2.15 \ version_check-0.9.4 \ walkdir-2.5.0 \ wasi-0.11.0+wasi-snapshot-preview1 \ wasm-bindgen-0.2.92 \ wasm-bindgen-backend-0.2.92 \ wasm-bindgen-macro-0.2.92 \ wasm-bindgen-macro-support-0.2.92 \ wasm-bindgen-shared-0.2.92 \ web-time-0.2.4 \ webpki-roots-0.26.3 \ winapi-0.3.9 \ winapi-i686-pc-windows-gnu-0.4.0 \ winapi-util-0.1.8 \ winapi-x86_64-pc-windows-gnu-0.4.0 \ windows-core-0.52.0 \ windows-sys-0.48.0 \ windows-sys-0.52.0 \ windows-targets-0.48.5 \ windows-targets-0.52.5 \ windows_aarch64_gnullvm-0.48.5 \ windows_aarch64_gnullvm-0.52.5 \ windows_aarch64_msvc-0.48.5 \ windows_aarch64_msvc-0.52.5 \ windows_i686_gnu-0.48.5 \ windows_i686_gnu-0.52.5 \ windows_i686_gnullvm-0.52.5 \ windows_i686_msvc-0.48.5 \ windows_i686_msvc-0.52.5 \ windows_x86_64_gnu-0.48.5 \ windows_x86_64_gnu-0.52.5 \ windows_x86_64_gnullvm-0.48.5 \ windows_x86_64_gnullvm-0.52.5 \ windows_x86_64_msvc-0.48.5 \ windows_x86_64_msvc-0.52.5 \ winnow-0.6.13 \ xattr-1.3.1 \ zeroize-1.8.1 CARGO_BUILD= no CARGO_INSTALL= no CARGO_TEST= no CARGO_TARGET_DIR= ${WRKSRC}/target do-test: @cd ${WRKSRC}/examples/python && \ for e in `ls example_*.py`; do \ ${ECHO} "==> Running example $${e}"; \ ${SETENV} ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ ${PYTHON_CMD} $${e}; \ done .include diff --git a/math/py-cmyt/Makefile b/math/py-cmyt/Makefile index 089a88ad4361..dbdec3864c6f 100644 --- a/math/py-cmyt/Makefile +++ b/math/py-cmyt/Makefile @@ -1,34 +1,34 @@ PORTNAME= cmyt DISTVERSIONPREFIX= v DISTVERSION= 2.0.2 PORTREVISION= 2 CATEGORIES= math python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Collection of Matplotlib colormaps from the yt project WWW= https://yt-project.org \ https://github.com/yt-project/cmyt LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.2.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}more-itertools>=8.4:devel/py-more-itertools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colorspacious>=1.1.2:devel/py-colorspacious@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist pytest USE_GITHUB= yes GH_ACCOUNT= yt-project NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests have errors: pytest.PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? .include diff --git a/math/py-contourpy/Makefile b/math/py-contourpy/Makefile index 73ad4c8b9294..83fca0dec846 100644 --- a/math/py-contourpy/Makefile +++ b/math/py-contourpy/Makefile @@ -1,26 +1,26 @@ PORTNAME= contourpy PORTVERSION= 1.3.3 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Python library for calculating contours of 2D quadrilateral grids WWW= https://github.com/contourpy/contourpy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/pybind11:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meson-python>=0:devel/meson-python@${PY_FLAVOR} \ meson:devel/meson -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} USES= localbase pkgconfig python USE_PYTHON= autoplist concurrent pep517 pytest BINARY_ALIAS= pybind11-config=pybind11-config-${PYTHON_VER} .include diff --git a/math/py-cvxpy/Makefile b/math/py-cvxpy/Makefile index 3e139ecac272..8c0e212326a8 100644 --- a/math/py-cvxpy/Makefile +++ b/math/py-cvxpy/Makefile @@ -1,41 +1,41 @@ PORTNAME= cvxpy DISTVERSION= 1.6.4 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Domain-specific language for modeling convex optimization problems WWW= https://www.cvxpy.org \ https://github.com/cvxpy/cvxpy LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ecos>=2:math/py-ecos@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}clarabel>=0.5.0:math/py-clarabel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}daqp>0:math/py-daqp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}osqp>0:math/py-osqp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PySCIPOpt>0:math/py-PySCIPOpt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scs>0:math/py-scs@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}diffcp>0:math/py-diffcp@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_cvxcore${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_cvxpy_sparsecholesky${PYTHON_TAG}.so # tests as of 1.6.4: 4 failed, 1308 passed, 216 skipped, 534 warnings in 610.43s (0:10:10) .include diff --git a/math/py-cyipopt/Makefile b/math/py-cyipopt/Makefile index b0536a240dd8..713a90d9c8e4 100644 --- a/math/py-cyipopt/Makefile +++ b/math/py-cyipopt/Makefile @@ -1,32 +1,32 @@ PORTNAME= cyipopt DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Cython interface for the interior point optimizer IPOPT WWW= https://github.com/matthias-k/cyipopt LICENSE= EPL -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libblas.so:math/blas \ libipopt.so:math/ipopt \ liblapack.so:math/lapack -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= fortran python pkgconfig # fortran because ipopt's pkg-config returns gcc libs USE_PYTHON= distutils cython autoplist pytest USE_GITHUB= yes GH_ACCOUNT= matthias-k TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/ipopt_wrapper${PYTHON_TAG}.so .include diff --git a/math/py-deap/Makefile b/math/py-deap/Makefile index bb167aa4c207..ffe0a2e87ec0 100644 --- a/math/py-deap/Makefile +++ b/math/py-deap/Makefile @@ -1,25 +1,25 @@ PORTNAME= deap DISTVERSION= 1.4.1 PORTREVISION= 2 CATEGORIES= math biology science devel python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Distributed Evolutionary Algorithms in Python WWW= https://github.com/DEAP/deap LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/deap/tools/_hypervolume/hv${PYTHON_TAG}.so .include diff --git a/math/py-dgl/Makefile b/math/py-dgl/Makefile index 13177630eb27..ec2071bfd960 100644 --- a/math/py-dgl/Makefile +++ b/math/py-dgl/Makefile @@ -1,72 +1,72 @@ PORTNAME= dgl DISTVERSION= 1.1.2 PORTREVISION= 3 CATEGORIES= math python # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Deep Graph Library WWW= https://www.dgl.ai/ LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${BACKEND_DEPENDS} LIB_DEPENDS= libdgl.so:math/dgl RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}networkx>=2.1:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.8.0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.19.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${BACKEND_DEPENDS} USES= python localbase USE_PYTHON= autoplist cython0 distutils WRKSRC_SUBDIR= python USE_GITHUB= yes GH_ACCOUNT= dmlc MAKE_ENV= DGL_LIBRARY_PATH=${LOCALBASE}/lib POST_PLIST= fix-plist OPTIONS_RADIO= BACKEND OPTIONS_RADIO_BACKEND= PYTORCH TENSORFLOW OPTIONS_DEFAULT= PYTORCH PYTORCH_DESC= Use PyTorch backend PYTORCH_VARS= BACKEND_DEPENDS=${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} PYTORCH_MAKE_ENV= DGLBACKEND=pytorch TENSORFLOW_DESC= Use TensorFlow backend TENSORFLOW_VARS= BACKEND_DEPENDS=${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR} TENSORFLOW_MAKE_ENV= DGLBACKEND=tensorflow post-install: # workaround for https://github.com/dmlc/dgl/issues/5665 @${RM} ${STAGEDIR}${PREFIX}/dgl/libdgl.so # remove empty dirs @${RMDIR} \ ${STAGEDIR}${PREFIX}/dgl/tensoradapter/pytorch \ ${STAGEDIR}${PREFIX}/dgl/tensoradapter \ ${STAGEDIR}${PREFIX}/dgl/dgl_sparse \ ${STAGEDIR}${PREFIX}/dgl # strip binaries @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/dgl/_ffi/_cy3/core${PYTHON_TAG}.so fix-plist: # workaround for https://github.com/dmlc/dgl/issues/5665 @${REINPLACE_CMD} ' \ /dgl\/libdgl.so/d ; \ ' ${TMPPLIST} # remove empty dirs @${REINPLACE_CMD} ' \ /dgl\/tensoradapter\/pytorch/d ; \ /dgl\/dgl_sparse/d ; \ ' ${TMPPLIST} .include diff --git a/math/py-diffcp/Makefile b/math/py-diffcp/Makefile index dbad31a80f15..692cd5efff55 100644 --- a/math/py-diffcp/Makefile +++ b/math/py-diffcp/Makefile @@ -1,32 +1,32 @@ PORTNAME= diffcp DISTVERSION= 1.0.23 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Differentiation through cone programs WWW= https://github.com/cvxgrp/diffcp/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cvxpy>0:math/py-cvxpy@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/_diffcp${PYTHON_TAG}.so .include diff --git a/math/py-ducc0/Makefile b/math/py-ducc0/Makefile index b40be0270fc2..32c0e97083b7 100644 --- a/math/py-ducc0/Makefile +++ b/math/py-ducc0/Makefile @@ -1,31 +1,31 @@ PORTNAME= ducc0 DISTVERSION= 0.34.0 PORTREVISION= 2 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Distinctly Useful Code Collection (DUCC) WWW= https://gitlab.mpcdf.mpg.de/mtr/ducc LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_armv7= clang runs out of memory BROKEN_i386= non-constant-expression cannot be narrowed from type 'long long' to 'int' in initializer list (reported to the author on 2021-05-02 and 2022-02-01) BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++17-lang python USE_PYTHON= distutils autoplist pytest MAKE_ENV= DUCC0_OPTIMIZATION=none TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/ducc0*.so .include diff --git a/math/py-ecos/Makefile b/math/py-ecos/Makefile index 2fac2b5d50b8..48848e6428b5 100644 --- a/math/py-ecos/Makefile +++ b/math/py-ecos/Makefile @@ -1,28 +1,28 @@ PORTNAME= ecos DISTVERSION= 2.0.14 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python package for ECOS: Embedded Cone Solver WWW= https://www.embotech.com/ECOS LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.9:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pre-configure: @${ECHO} "__version__=\"$(DISTVERSION)\"" > ${WRKSRC}/src/ecos/version.py post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_ecos*.so .include diff --git a/math/py-emcee/Makefile b/math/py-emcee/Makefile index b558cb717db0..c7088a1fcc02 100644 --- a/math/py-emcee/Makefile +++ b/math/py-emcee/Makefile @@ -1,31 +1,31 @@ PORTNAME= emcee DISTVERSION= 3.1.6 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python ensemble sampling toolkit for MCMC WWW= https://emcee.readthedocs.io/en/stable/ \ https://github.com/dfm/emcee LICENSE= LGPL21 MIT LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests as of 3.1.6: 126 passed, 1 warning in 303.87s (0:05:03) .include diff --git a/math/py-faiss/Makefile b/math/py-faiss/Makefile index b6c7831efc31..7b57daddc833 100644 --- a/math/py-faiss/Makefile +++ b/math/py-faiss/Makefile @@ -1,51 +1,51 @@ PORTNAME= faiss DISTVERSIONPREFIX= v DISTVERSION= 1.14.1 PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for efficient similarity search & clustering of dense vectors WWW= https://github.com/facebookresearch/faiss LICENSE= MIT LICENSE_FILE= ${WRKSRC}/../../LICENSE BROKEN_i386= clang crashes, see bug#261580 -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} BUILD_DEPENDS= swig:devel/swig \ ${PY_DEPENDS} LIB_DEPENDS= libfaiss.so:math/faiss RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} USES= cmake compiler:c++11-lang localbase python USE_PYTHON= flavors pytest # tests fail to run, see https://github.com/facebookresearch/faiss/issues/3914 USE_GITHUB= yes GH_ACCOUNT= facebookresearch WRKSRC_SUBDIR= faiss/python CMAKE_ARGS= -DPython_EXECUTABLE:STRING=${PYTHON_CMD} TEST_WRKSRC= ${WRKSRC}/../../tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-patch: # remove GPU testcases @${RM} -r ${WRKSRC}/../../faiss/gpu do-install: # see https://github.com/facebookresearch/faiss/issues/2194 ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME} ${INSTALL_LIB} ${BUILD_WRKSRC}/_swigfaiss.so ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME} .for f in __init__.py array_conversions.py class_wrappers.py extra_wrappers.py gpu_wrappers.py loader.py swigfaiss.py ${INSTALL_DATA} ${BUILD_WRKSRC}/${f} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME} .endfor cd ${BUILD_WRKSRC} && ${COPYTREE_SHARE} contrib ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} # tests expect the modle common_io to be available, but this module is questionable, see https://github.com/facebookresearch/faiss/issues/4865 .include diff --git a/math/py-fenics-basix/Makefile b/math/py-fenics-basix/Makefile index cdf2f271edef..f438eac96cb7 100644 --- a/math/py-fenics-basix/Makefile +++ b/math/py-fenics-basix/Makefile @@ -1,44 +1,44 @@ PORTNAME= fenics-basix DISTVERSIONPREFIX= v DISTVERSION= 0.8.0 PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= FEniCS finite element basis evaluation library WWW= https://github.com/FEniCS/basix LICENSE= MIT LICENSE_FILE= ${WRKSRC}/../LICENSE BUILD_DEPENDS= pybind11>=2.6.4:devel/pybind11 \ cmake-core>=3.16:devel/cmake-core \ xtensor>0:math/xtensor \ xtl-quant-stack>0:devel/xtl-quant-stack \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>=0.12:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.2.0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libbasix.so:math/fenics-basix RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fenics-ufl>0:math/py-fenics-ufl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} USES= localbase python USE_PYTHON= pep517 autoplist pytest # 36 tests are known to fail likely because of broken numba, see https://github.com/FEniCS/basix/issues/594 USE_GITHUB= yes GH_ACCOUNT= FEniCS GH_PROJECT= basix WRKSRC_SUBDIR= python TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/../test .include diff --git a/math/py-fpylll/Makefile b/math/py-fpylll/Makefile index e40e68eea834..2440379c1f60 100644 --- a/math/py-fpylll/Makefile +++ b/math/py-fpylll/Makefile @@ -1,57 +1,57 @@ PORTNAME= fpylll PORTVERSION= 0.6.4 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Python interface for fplll WWW= https://github.com/fplll/fpylll LICENSE= GPLv2 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pythran>0:devel/py-pythran@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} LIB_DEPENDS= libfplll.so:math/fplll \ libgmp.so:math/gmp \ libmpfr.so:math/mpfr \ libpari.so:math/pari \ libqd.so:math/qd -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pythran>0:devel/py-pythran@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR} TEST_DEPENDS= py.test:devel/py-pytest@${PY_FLAVOR} #USE_GITHUB= yes #GH_ACCOUNT= fplll USES= compiler:c++11-lang python USE_PYTHON= cython distutils .if !defined(WITH_DEBUG) LDFLAGS+= -s .endif OPTIONS_DEFINE= TUTO TUTO_DESC= Build the tutorial OPTIONS_SUB= Yes TUTO_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sphinx>=1.6,1:textproc/py-sphinx@${PY_FLAVOR} TUTO_USES= gmake PLIST_SUB= VER=${PORTVERSION:R} do-build-TUTO-on: (cd ${WRKSRC}/docs && ${GMAKE} html) post-build-TUTO-on: ${MKDIR} ${STAGEDIR}${DOCSDIR} ${CP} -R ${WRKSRC}/docs/_build/html/* ${STAGEDIR}${DOCSDIR} do-test: install (cd ${WRKSRC} && PY_IGNORE_IMPORTMISMATCH=1 py.test) .include diff --git a/math/py-fsph/Makefile b/math/py-fsph/Makefile index 655e3331daf0..7ad997de3775 100644 --- a/math/py-fsph/Makefile +++ b/math/py-fsph/Makefile @@ -1,38 +1,38 @@ PORTNAME= fsph DISTVERSIONPREFIX= v DISTVERSION= 0.3.0 PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library to quickly compute series of complex spherical harmonics WWW= https://fsph.readthedocs.io/en/latest/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} # ${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR} # tensorflow is an optional dependency that is currently broken: https://github.com/glotzerlab/fsph/issues/6 BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= compiler:c++14-lang localbase python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= glotzerlab TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests CONFLICTS_BUILD= ${PYTHON_PKGNAMEPREFIX}-tensorflow post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/fsph/_fsph${PYTHON_TAG}.so #${STAGEDIR}${PYTHON_SITELIBDIR}/fsph/_tf_ops${PYTHON_TAG}.so .include diff --git a/math/py-gau2grid/Makefile b/math/py-gau2grid/Makefile index ecb338c33943..f8bbdf7bf5d7 100644 --- a/math/py-gau2grid/Makefile +++ b/math/py-gau2grid/Makefile @@ -1,39 +1,39 @@ PORTNAME= gau2grid DISTVERSIONPREFIX= v DISTVERSION= 2.0.7 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast computation of a gaussian and its derivative on a grid WWW= https://github.com/dgasmith/gau2grid LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ cmake:devel/cmake-core -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= cmake compiler:c11 python USE_GITHUB= yes GH_ACCOUNT= dgasmith USE_PYTHON= flavors CMAKE_ON= INSTALL_PYMOD CMAKE_ARGS= -DPYMOD_INSTALL_LIBDIR:STRING=${PYTHON_SITELIBDIR} -DFREEBSD_PYTHON_VER:STRING=${PYTHON_VER} OPTIONS_DEFINE= NATIVE NATIVE_CMAKE_BOOL= ENABLE_XHOST post-install: @${RM} -r ${STAGEDIR}${PYTHON_SITELIBDIR}/gau2grid/__pycache__ @${RM} -r ${STAGEDIR}${LOCALBASE}//lib/usr # LICENSE is installed under there do-test: @cd ${WRKSRC} && ${PYTHON_CMD} -m pytest .include diff --git a/math/py-gimmik/Makefile b/math/py-gimmik/Makefile index 26a9b0ffeb9a..ba9cd5020c2c 100644 --- a/math/py-gimmik/Makefile +++ b/math/py-gimmik/Makefile @@ -1,23 +1,23 @@ PORTNAME= gimmik DISTVERSION= 3.2.1 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Generator of Matrix Multiplication Kernels WWW= https://github.com/vincentlab/GiMMiK LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>0:textproc/py-mako@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-hdmedians/Makefile b/math/py-hdmedians/Makefile index 1a88158d1ccf..5084264b6115 100644 --- a/math/py-hdmedians/Makefile +++ b/math/py-hdmedians/Makefile @@ -1,24 +1,24 @@ PORTNAME= hdmedians PORTVERSION= 0.14.2 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High-dimensional medians WWW= https://github.com/daleroberts/hdmedians LICENSE= APACHE20 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nose>=1.0:devel/py-nose@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/hdmedians/geomedian*.so .include diff --git a/math/py-heyoka/Makefile b/math/py-heyoka/Makefile index 71501b0d58d4..7791918143d4 100644 --- a/math/py-heyoka/Makefile +++ b/math/py-heyoka/Makefile @@ -1,51 +1,51 @@ PORTNAME= heyoka DISTVERSIONPREFIX= v DISTVERSION= 6.0.0 PORTREVISION= 8 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python library for ODE integration via Taylor's method and LLVM WWW= https://bluescarni.github.io/heyoka.py/ LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= pybind11>0:devel/pybind11 \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libboost_serialization.so:devel/boost-libs \ libfmt.so:devel/libfmt \ libgmp.so:math/gmp \ libheyoka.so:math/heyoka \ libmp++.so:math/mppp \ libmpc.so:math/mpc \ libmpfr.so:math/mpfr \ libtbb.so:devel/onetbb \ libspdlog.so:devel/spdlog -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} USES= cmake compiler:c++17-lang llvm:min=16,build,run python USE_PYTHON= flavors USE_GITHUB= yes GH_ACCOUNT= bluescarni GH_PROJECT= ${PORTNAME}.py CMAKE_ON= HEYOKA_PY_ENABLE_IPO CMAKE_ARGS= -DFREEBSD_PYTHON_DISTVERSION=${PYTHON_DISTVERSION:R} \ -DPython3_EXECUTABLE=${PYTHON_CMD} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} do-test: # testsuite based on instructions in https://bluescarni.github.io/heyoka.py/install.html#verifying-the-installation @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -c "import heyoka; heyoka.test.run_test_suite();" # integrate and plot an example @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/example-restricted-three-body-problem.py .include diff --git a/math/py-highspy/Makefile b/math/py-highspy/Makefile index 390eacc52304..f1a5497a30e9 100644 --- a/math/py-highspy/Makefile +++ b/math/py-highspy/Makefile @@ -1,27 +1,27 @@ PORTNAME= highspy DISTVERSION= 1.11.0 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python bindings for the extensible C++ library for random forests WWW= https://github.com/automl/random_forest_run LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.3.3:devel/py-scikit-build-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:indirect compiler:c++11-lang python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 1.11.0: 58 passed in 2.98s .include diff --git a/math/py-hmmlearn/Makefile b/math/py-hmmlearn/Makefile index 49bf368cb66b..c54a354b3935 100644 --- a/math/py-hmmlearn/Makefile +++ b/math/py-hmmlearn/Makefile @@ -1,38 +1,38 @@ PORTNAME= hmmlearn DISTVERSION= 0.3.3 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Unsupervised learning and inference of Hidden Markov Models WWW= https://github.com/hmmlearn/hmmlearn LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= wheel-${PYTHON_VER}:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=3.4.3:devel/py-setuptools-scm@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.16:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>=0:devel/py-pybind11@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.16:science/py-scikit-learn@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils pytest post-stage: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/hmmlearn/_hmmc.cpython-${PYTHON_SUFFIX}.so # 2023-12-29: Tests currently fail due to known upstream issues do-test: # setup.py builds directly to prefix by default, so we need to build # again within the project for pytest to work @(cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} setup.py develop) (cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} pytest-${PYTHON_VER} --capture=no) .include diff --git a/math/py-iminuit/Makefile b/math/py-iminuit/Makefile index 49f54f71f1fe..1998eae9b6c5 100644 --- a/math/py-iminuit/Makefile +++ b/math/py-iminuit/Makefile @@ -1,46 +1,46 @@ PORTNAME= iminuit DISTVERSION= 2.30.1 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Jupyter-friendly Python frontend for MINUIT2 in C++ WWW= https://scikit-hep.org/iminuit/ \ https://github.com/scikit-hep/iminuit LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= cmake:devel/cmake-core \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pathspec>0:devel/py-pathspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} # devel/py-scikit-build-core's optional dependencies are for some reason required here -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}annotated-types>0:devel/py-annotated-types@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}boost-histogram>0:misc/py-boost-histogram@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipykernel>0:devel/py-ipykernel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jacobi>0:math/py-jacobi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba-stats>0:math/py-numba-stats@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}resample>0:math/py-resample@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}unicodeitplus>0:textproc/py-unicodeitplus@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= pep517 cython_test autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 2.30.1: 4 failed, 674 passed in 53.97s, see https://github.com/scikit-hep/iminuit/issues/1063 .include diff --git a/math/py-ipyopt/Makefile b/math/py-ipyopt/Makefile index 3ec2e92f7872..46f78029c8f1 100644 --- a/math/py-ipyopt/Makefile +++ b/math/py-ipyopt/Makefile @@ -1,36 +1,36 @@ PORTNAME= ipyopt DISTVERSION= 0.12.10 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface to Ipopt WWW= https://gitlab.com/g-braeunlich/ipyopt LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} LIB_DEPENDS= libipopt.so:math/ipopt RUN_DEPENDS= ${PY_DEPENDS} USES= compiler:c++17-lang pkgconfig python USE_PYTHON= distutils autoplist pytest CXXFLAGS+= $(pkg-config --cflags ipopt) TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/${PORTNAME}.cpython-*.so do-test: @cd ${WRKSRC} && ${SETENV} ${TEST_ENV} pytest # tests as of 0.12.10: 8 passed, 10 skipped in 18.39s .include diff --git a/math/py-isosurfaces/Makefile b/math/py-isosurfaces/Makefile index f1c762dd96a8..d9b36292db5f 100644 --- a/math/py-isosurfaces/Makefile +++ b/math/py-isosurfaces/Makefile @@ -1,31 +1,31 @@ PORTNAME= isosurfaces DISTVERSION= 0.1.2 PORTREVISION= 2 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Construct isolines/isosurfaces over a 2D/3D scalar field WWW= https://github.com/jared-hughes/isosurfaces LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pycairo>0:graphics/py-pycairo@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ xdg-open:devel/xdg-utils USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} do-test: @cd ${TEST_WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/isoline_demo.py && \ xdg-open ${TEST_WRKSRC}/out/demo.svg .include diff --git a/math/py-jacobi/Makefile b/math/py-jacobi/Makefile index fe02b35d7b1a..a105a34dab6d 100644 --- a/math/py-jacobi/Makefile +++ b/math/py-jacobi/Makefile @@ -1,27 +1,27 @@ PORTNAME= jacobi PORTVERSION= 0.9.2 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Compute numerical derivatives WWW= https://github.com/hdembinski/jacobi LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/math/py-jij-cimod/Makefile b/math/py-jij-cimod/Makefile index 52774739c679..f7b1acfd717b 100644 --- a/math/py-jij-cimod/Makefile +++ b/math/py-jij-cimod/Makefile @@ -1,34 +1,34 @@ PORTNAME= jij-cimod DISTVERSION= 1.7.3 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for the C++ library for a binary quadratic model WWW= https://www.openjij.org/ \ https://github.com/Jij-Inc/cimod LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.10:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ nlohmann-json>0:devel/nlohmann-json \ pybind11-json>0:devel/pybind11-json LIB_DEPENDS= libcblas.so:math/cblas \ liblapack.so:math/lapack \ libopenblas.so:math/openblas USES= cmake:indirect compiler:c++17-lang eigen:3 localbase:ldflags python USE_PYTHON= pep517 cython autoplist pytest TEST_WRKSRC= ${WRKSRC}/tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 1.7.3: 49 passed, 10 warnings in 19.01s .include diff --git a/math/py-keras-applications/Makefile b/math/py-keras-applications/Makefile index 2fc636e22995..baf98e0d75de 100644 --- a/math/py-keras-applications/Makefile +++ b/math/py-keras-applications/Makefile @@ -1,24 +1,24 @@ PORTNAME= keras-applications DISTVERSION= 1.0.8 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rm@FreeBSD.org COMMENT= Reference implementations of popular deep learning models WWW= https://github.com/keras-team/keras-applications LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=0:science/py-h5py@${PY_FLAVOR} USES= python USE_GITHUB= yes GH_ACCOUNT= keras-team USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/math/py-keras-preprocessing/Makefile b/math/py-keras-preprocessing/Makefile index 67dc7f87634c..72a65b6eac16 100644 --- a/math/py-keras-preprocessing/Makefile +++ b/math/py-keras-preprocessing/Makefile @@ -1,24 +1,24 @@ PORTNAME= keras-preprocessing DISTVERSION= 1.1.2 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rm@FreeBSD.org COMMENT= Easy data preprocessing and data augmentation for DL models WWW= https://github.com/keras-team/keras-preprocessing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=0:devel/py-six@${PY_FLAVOR} USES= python USE_GITHUB= yes GH_ACCOUNT= keras-team USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/math/py-keras/Makefile b/math/py-keras/Makefile index 3df2bedc5fd4..f14617d74dfb 100644 --- a/math/py-keras/Makefile +++ b/math/py-keras/Makefile @@ -1,37 +1,37 @@ PORTNAME= keras DISTVERSION= 3.12.0 PORTREVISION= 1 CATEGORIES= math python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Multi-backend deep learning library for Python WWW= https://keras.io/ LICENSE= APACHE20 BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}absl-py>0:devel/py-absl-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ml-dtypes>0:math/py-ml-dtypes@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}namex>0:devel/py-namex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}optree>0:devel/py-optree@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tensorflow>=2.12.0:science/py-tensorflow@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}scipy>=1.0:science/py-scipy@${PY_FLAVOR} # Extra dependencies for optional backends (jax, torch) # openvino backend not available as FreeBSD port EXTRA_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jax>0:math/py-jax@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes .include diff --git a/math/py-levmar/Makefile b/math/py-levmar/Makefile index 1e5b93aaecf3..3902a969a613 100644 --- a/math/py-levmar/Makefile +++ b/math/py-levmar/Makefile @@ -1,44 +1,44 @@ # levmar library (math/levmar) is bundled PORTNAME= levmar DISTVERSION= 0.3.0.dev0+git # version is hardcoded in the project CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Binding to levmar library (Levenberg-Marquardt optimization algorithm) WWW= https://github.com/bjodah/levmar LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libblas.so:math/blas \ liblapack.so:math/lapack -TEST_DEPENDS= ${PYNUMPY} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest USE_GITHUB= yes GH_ACCOUNT= bjodah GH_TAGNAME= 9291962 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_ARGS= --pyargs levmar TEST_WRKSRC= ${WRKDIR} .include .if ${OPSYS} == FreeBSD CFLAGS+= -Wno-error=int-conversion CFLAGS+= -Wno-error=incompatible-function-pointer-types .endif # tests as of 0.3.0.dev0+git (9291962): # Results (0.22s): # 63 passed .include diff --git a/math/py-libceed/Makefile b/math/py-libceed/Makefile index 63524cceae78..7bfc0c410aea 100644 --- a/math/py-libceed/Makefile +++ b/math/py-libceed/Makefile @@ -1,45 +1,45 @@ PORTNAME= libceed DISTVERSIONPREFIX= v DISTVERSION= 0.12.0-763 PORTREVISION= 2 DISTVERSIONSUFFIX= -ge3ae47f6 CATEGORIES= math # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= CEED Library: Code for Efficient Extensible Discretizations WWW= https://libceed.org/en/latest/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>0:devel/py-cffi@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= gmake:devel/gmake \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= fortran python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= CEED GH_PROJECT= libCEED CFLAGS+= -fPIC # https://github.com/CEED/libCEED/issues/1706 BINARY_ALIAS= make=${GMAKE} # python3=${PYTHON_CMD} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/_ceed_cffi.abi3.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/libceed/lib/libceed.so do-test: cd ${WRKSRC}/python/tests && \ ${SETENV} PYTHON=${PYTHON_CMD} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} ${GMAKE} test # rebuilds and reinstalls the C library, see https://github.com/CEED/libCEED/issues/1707 .include diff --git a/math/py-linearmodels/Makefile b/math/py-linearmodels/Makefile index 8cd1b23d3606..9086cee45f2b 100644 --- a/math/py-linearmodels/Makefile +++ b/math/py-linearmodels/Makefile @@ -1,44 +1,44 @@ PORTNAME= linearmodels DISTVERSION= 6.1 PORTREVISION= 2 CATEGORIES= math python # statistics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Linear Panel, Instrumental Variable, Asset Pricing and other models WWW= https://bashtage.github.io/linearmodels/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.md PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}formulaic>=1.0.0:math/py-formulaic@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mypy_extensions>=0.4:devel/py-mypy_extensions@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.4.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}property-cached>=1.6.3:devel/py-property-cached@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyhdfe>=0.1:math/py-pyhdfe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.8.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.13.0:math/py-statsmodels@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flake8>0:devel/py-flake8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}isort>0:devel/py-isort@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}seaborn>0:math/py-seaborn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray>=0.13:devel/py-xarray@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= autoplist cython distutils pytest # 14 tests fail, see https://github.com/bashtage/linearmodels/issues/550 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/linearmodels/panel/_utility${PYTHON_TAG}.so .include diff --git a/math/py-lmfit/Makefile b/math/py-lmfit/Makefile index 248825a4da19..c87bbd873ba7 100644 --- a/math/py-lmfit/Makefile +++ b/math/py-lmfit/Makefile @@ -1,36 +1,36 @@ PORTNAME= lmfit DISTVERSION= 1.3.3 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Least-squares Minimization with bounds and constraints WWW= https://lmfit.github.io/lmfit-py/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}asteval>=1.0:devel/py-asteval@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>=0.3.4:devel/py-dill@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uncertainties>=3.2.2:math/py-uncertainties@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flaky>0:devel/py-flaky@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests as of 1.3.3: 5 failed, 654 passed, 12 skipped, 16 warnings in 153.81s (0:02:33) # _tkinter.TclError: no display name and no $DISPLAY environment variable .include diff --git a/math/py-luminol/Makefile b/math/py-luminol/Makefile index fe6b9d057d80..c9bb45ebecf3 100644 --- a/math/py-luminol/Makefile +++ b/math/py-luminol/Makefile @@ -1,23 +1,23 @@ PORTNAME= luminol DISTVERSION= 0.4 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= ports@FreeBSD.org COMMENT= Lightweight python library for time series data analysis WWW= https://github.com/linkedin/luminol LICENSE= APACHE20 RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/math/py-mapbox-earcut/Makefile b/math/py-mapbox-earcut/Makefile index 171d6368ed09..d5ad0da47fa9 100644 --- a/math/py-mapbox-earcut/Makefile +++ b/math/py-mapbox-earcut/Makefile @@ -1,32 +1,32 @@ PORTNAME= mapbox-earcut DISTVERSIONPREFIX= v DISTVERSION= 1.0.2 PORTREVISION= 2 CATEGORIES= math #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Bindings for Pango for use with Manim WWW= https://manimpango.manim.community/en/latest/ LICENSE= ISCL LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= skogler GH_PROJECT= mapbox_earcut_python TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/mapbox_earcut${PYTHON_TAG}.so .include diff --git a/math/py-mathics/Makefile b/math/py-mathics/Makefile index 2a29f7c1760f..ad7a94436b2a 100644 --- a/math/py-mathics/Makefile +++ b/math/py-mathics/Makefile @@ -1,88 +1,88 @@ PORTNAME= Mathics3 PORTVERSION= 9.0.0 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${PORTVERSION} MAINTAINER= thierry@FreeBSD.org COMMENT= General-purpose computer algebra system (CAS) WWW= https://mathics.org/ LICENSE= GPLv3+ -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}pint>0:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Pympler>0:devel/py-pympler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}llvmlite>0:devel/py-llvmlite@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}palettable>0:misc/py-palettable@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wordcloud>0:textproc/py-wordcloud@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Mathics_Scanner>0:math/py-mathics-scanner -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ bash:shells/bash \ ${PYTHON_PKGNAMEPREFIX}py>0:devel/py-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>0:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nltk>0:textproc/py-nltk@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}stopit>0:devel/py-stopit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyaml>0:textproc/py-pyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyocr>0:graphics/py-pyocr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langid>0:textproc/py-langid@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}llvmlite>0:devel/py-llvmlite@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colorama>0:devel/py-colorama@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}enchant>0:textproc/py-enchant@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>0:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}palettable>0:misc/py-palettable@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tifffile>0:graphics/py-tifffile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipykernel>0:devel/py-ipykernel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycountry>0:textproc/py-pycountry@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wordcloud>0:textproc/py-wordcloud@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}recordclass>0:devel/py-recordclass@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}unidecode>0:converters/py-unidecode@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Mathics_Scanner>0:math/py-mathics-scanner TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pluggy>0:devel/py-pluggy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pexpect>0:misc/py-pexpect@${PY_FLAVOR} #USE_GITHUB= yes #GH_ACCOUNT= ${PORTNAME:tl} USES= python shebangfix USE_PYTHON= cython cython_run noflavors pep517 MAKE_ENV+= USE_CYTHON=yes SHEBANG_GLOB= *.py WRKSRC= ${WRKDIR}/${PORTNAME:tl}-${PORTVERSION} PLIST_SUB= VER=${PORTVERSION} .if !defined(WITH_DEBUG) LDFLAGS+= -s .endif .include diff --git a/math/py-matplotlib/Makefile b/math/py-matplotlib/Makefile index feb672df0127..c91ebd5998ac 100644 --- a/math/py-matplotlib/Makefile +++ b/math/py-matplotlib/Makefile @@ -1,55 +1,55 @@ PORTNAME= matplotlib DISTVERSION= 3.10.8 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= mainland@apeiron.net COMMENT= Plotting library uses a syntax familiar to MATLAB users WWW= https://matplotlib.org/ LICENSE= PSFL BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.13.2:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=7:devel/py-setuptools-scm@${PY_FLAVOR} LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libpng.so:graphics/png \ libqhull_r.so:math/qhull -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}contourpy>=1.0.1:math/py-contourpy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cycler>=0.10:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fonttools>=4.22.0:print/py-fonttools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}kiwisolver>=1.3.1:math/py-kiwisolver@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=9:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>=3:devel/py-pyparsing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.7:devel/py-python-dateutil@${PY_FLAVOR} USES= compiler:c++17-lang gettext gnome localbase \ pkgconfig python shebangfix uniquefiles:dirs USE_CXXSTD= c++17 USE_PYTHON= autoplist pep517 PEP517_BUILD_CONFIG_SETTING= -Csetup-args="-Dsystem-freetype=true" \ -Csetup-args="-Dsystem-qhull=true" PLIST_SUB= VER=${PORTVERSION} PORTEXAMPLES= * OPTIONS_DEFINE= EXAMPLES post-extract: @${FIND} ${WRKSRC} -name '*.py' | \ ${XARGS} ${CHMOD} -x post-install: ${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR}/matplotlib -name '*.so' | \ ${XARGS} ${STRIP_CMD} post-install-EXAMPLES-on: #@${MKDIR} ${STAGEDIR}${EXAMPLESDIR} #${CP} -R ${WRKSRC}/examples/ ${STAGEDIR}${EXAMPLESDIR} .include diff --git a/math/py-minorminer/Makefile b/math/py-minorminer/Makefile index 522d79c2fe34..ef83692a0737 100644 --- a/math/py-minorminer/Makefile +++ b/math/py-minorminer/Makefile @@ -1,43 +1,43 @@ PORTNAME= minorminer DISTVERSION= 0.2.19 PORTREVISION= 1 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Heuristic tool for minor embedding of graphs WWW= https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/ \ https://github.com/dwavesystems/minorminer LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fasteners>=0.19:devel/py-fasteners@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}homebase>=1.0.1:devel/py-homebase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=3.2.1:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-networkx>=0.8.15:science/py-dwave-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rectangle-packer>=2.0.1:math/py-rectangle-packer@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.13.1:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython autoplist pytest USE_GITHUB= yes GH_ACCOUNT= dwavesystems GH_TUPLE= boothby:glasgow-subgraph-solver:568c45f:glasgow_subgraph_solver/external/glasgow-subgraph-solver \ nemequ:portable-snippets:84abba9:portable_snippets/external/portable-snippets TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/minorminer/_extern/rpack/_core${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/minorminer/_minorminer${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/minorminer/busclique${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/minorminer/subgraph${PYTHON_TAG}.so .include diff --git a/math/py-mnnpy/Makefile b/math/py-mnnpy/Makefile index 38fecc82cedd..c5b1504cf150 100644 --- a/math/py-mnnpy/Makefile +++ b/math/py-mnnpy/Makefile @@ -1,40 +1,40 @@ PORTNAME= mnnpy DISTVERSION= 0.1.9.5 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= MNN (Mutual Nearest Neighbors) correct in python WWW= https://github.com/chriscainx/mnnpy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}anndata>0:devel/py-anndata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython autoplist post-patch: .if defined(CPUTYPE) . if ${ARCH:Mpowerpc*} @${REINPLACE_CMD} -e "s|'-march=native'|'-mcpu=${CPUTYPE}'|" ${WRKSRC}/setup.py . else @${REINPLACE_CMD} -e "s|'-march=native'|'-march=${CPUTYPE}'|" ${WRKSRC}/setup.py . endif .else @${REINPLACE_CMD} -e "s|'-march=native', ||" ${WRKSRC}/setup.py .endif post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/mnnpy/_utils.cpython-${PYTHON_SUFFIX}.so .include diff --git a/math/py-nlopt/Makefile b/math/py-nlopt/Makefile index 40f688671bd4..57c441a0c8cd 100644 --- a/math/py-nlopt/Makefile +++ b/math/py-nlopt/Makefile @@ -1,39 +1,39 @@ PORTNAME= nlopt DISTVERSION= 2.9.1 PORTREVISION= 1 CATEGORIES= math #MASTER_SITES= PYPI # https://github.com/DanielBok/nlopt-python/issues/15 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Nonlinear optimization library WWW= https://github.com/DanielBok/nlopt-python LICENSE= LGPL21 MIT LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= cmake:devel/cmake-core \ swig:devel/swig \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils # autoplist is broken, see https://github.com/DanielBok/nlopt-python/issues/17 USE_GITHUB= yes GH_ACCOUNT= DanielBok GH_PROJECT= nlopt-python GH_TUPLE= stevengj:nlopt:75dd16e:nlopt/extern/nlopt #CMAKE_ARGS= -DFREEBSD_PYTHON_VER=${PYTHON_VER} MAKE_ENV= FREEBSD_PYTHON_VER=${PYTHON_VER} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/nlopt/_nlopt.so do-test: @${SETENV} ${TEST_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} ${PYTHON_CMD} ${FILESDIR}/example.py .include diff --git a/math/py-numba-stats/Makefile b/math/py-numba-stats/Makefile index c510847f4d60..4946d0031319 100644 --- a/math/py-numba-stats/Makefile +++ b/math/py-numba-stats/Makefile @@ -1,35 +1,35 @@ PORTNAME= numba-stats PORTVERSION= 1.11.0 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Numba-accelerated implementations of common probability distributions WWW= https://github.com/HDembinski/numba-stats LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>=0.53:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.5:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pydocstyle>=0:devel/py-pydocstyle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes BINARY_ALIAS= python=${PYTHON_CMD} # for tests .include diff --git a/math/py-numpoly/Makefile b/math/py-numpoly/Makefile index df105ac5d893..b496271b3d0b 100644 --- a/math/py-numpoly/Makefile +++ b/math/py-numpoly/Makefile @@ -1,22 +1,22 @@ PORTNAME= numpoly DISTVERSION= 1.2.3 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Create/manipulate/evaluate polynomial arrays based on numpy.ndarray WWW= https://github.com/jonathf/numpoly LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-numpy-groupies/Makefile b/math/py-numpy-groupies/Makefile index de52cfa38f0f..91f6d0832330 100644 --- a/math/py-numpy-groupies/Makefile +++ b/math/py-numpy-groupies/Makefile @@ -1,33 +1,33 @@ PORTNAME= numpy-groupies DISTVERSION= 0.11.2 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Optimised tools for group-indexing operations: aggregated sum and more WWW= https://github.com/ml31415/numpy-groupies LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes do-test: @cd ${WRKSRC} && pytest # tests as of 0.11.2: 815 passed, 83 skipped in 489.20s (0:08:09) .include diff --git a/math/py-numpy-stl/Makefile b/math/py-numpy-stl/Makefile index 565d9e2a3190..683f67b3b139 100644 --- a/math/py-numpy-stl/Makefile +++ b/math/py-numpy-stl/Makefile @@ -1,26 +1,26 @@ PORTNAME= numpy-stl DISTVERSION= 2.11.3 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= db@FreeBSD.org COMMENT= Simple library to make working with STL files fast and easy WWW= https://github.com/WoLpH/numpy-stl LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-utils>=2.3.0:misc/py-python-utils@${PY_FLAVOR} USES= python USE_PYTHON= cython distutils autoplist post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/stl/_speedups*.so .include diff --git a/math/py-openTSNE/Makefile b/math/py-openTSNE/Makefile index 3d898c3b6fc0..fd5946257544 100644 --- a/math/py-openTSNE/Makefile +++ b/math/py-openTSNE/Makefile @@ -1,32 +1,32 @@ PORTNAME= openTSNE DISTVERSION= 1.0.2 PORTREVISION= 1 CATEGORIES= math python # statistics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast, parallel implementations of t-SNE WWW= https://github.com/pavlin-policar/openTSNE LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libfftw3.so:math/fftw3 -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.20:science/py-scikit-learn@${PY_FLAVOR} USES= compiler:c++14-lang localbase:ldflags python USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/pavlin-policar/openTSNE/issues/237 TEST_WRKSRC= ${WRKSRC}/tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${FIND} ${STAGEDIR}${PREFIX} -name "*.so" | ${XARGS} ${STRIP_CMD} .include diff --git a/math/py-or-tools/Makefile b/math/py-or-tools/Makefile index f96fe82b9422..21705218b434 100644 --- a/math/py-or-tools/Makefile +++ b/math/py-or-tools/Makefile @@ -1,89 +1,89 @@ PORTNAME= or-tools DISTVERSIONPREFIX= v DISTVERSION= 9.6 PORTREVISION= 13 CATEGORIES= math PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Google's Operations Research tools (Python binding) WWW= https://github.com/google/or-tools LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_armv7= SWIG wrapped code invalid in 32 bit architecture, regenerate code using -DSWIGWORDSIZE32 BROKEN_i386= SWIG wrapped code invalid in 32 bit architecture, regenerate code using -DSWIGWORDSIZE32 # see https://github.com/google/or-tools/issues/2130 -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}absl-py>0:devel/py-absl-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>0:devel/py-protobuf@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ ${PY_SETUPTOOLS} \ pybind11>0:devel/pybind11 \ protoc-gen-mypy:devel/py-mypy-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}virtualenv>0:devel/py-virtualenv@${PY_FLAVOR} \ swig:devel/swig LIB_DEPENDS= libabsl_base.so:devel/abseil \ libCbc.so:math/cbc \ libCgl.so:math/cgl \ libcoinasl.so:math/asl \ libcoinmumps.so:math/coin-or-mumps \ libCoinUtils.so:math/coinutils \ libnauty.so:math/nauty \ libopenblas.so:math/openblas \ libOsi.so:math/osi \ libOsiClp.so:math/clp \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libprotobuf.so:devel/protobuf \ libre2.so:devel/re2 RUN_DEPENDS= ${PY_DEPENDS} USES= blaslapack cmake:insource compiler:c++17-lang eigen:3 pkgconfig python USE_PYTHON= flavors pytest # tests fail, see https://github.com/google/or-tools/issues/3464 USE_GITHUB= yes GH_ACCOUNT= google CMAKE_OFF= BUILD_DEPS BUILD_pybind11 INSTALL_BUILD_DEPS BUILD_TESTING BUILD_EXAMPLES CMAKE_ON= BUILD_PYTHON CMAKE_ARGS= -DSWIG_EXECUTABLE=${LOCALBASE}/bin/swig -DFREEBSD_PYTHON_VER=${PYTHON_VER} CONFIGURE_ENV= UNIX_CBC_DIR=${LOCALBASE} UNIX_CLP_DIR=${LOCALBASE} BUILD_ENV= UNIX_CBC_DIR=${LOCALBASE} UNIX_CLP_DIR=${LOCALBASE} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} OPTIONS_DEFINE= SCIP SCIP_DESC= Use the SCIP solver # SCIP package isn't built because of licensing restrictions SCIP_CMAKE_BOOL= USE_SCIP SCIP_LIB_DEPENDS= libscip.so:math/SCIP post-patch: @${REINPLACE_CMD} -e '/absl::container/s,^,#,' \ ${WRKSRC}/ortools/constraint_solver/CMakeLists.txt \ ${WRKSRC}/ortools/glop/CMakeLists.txt \ ${WRKSRC}/ortools/linear_solver/CMakeLists.txt \ ${WRKSRC}/ortools/sat/CMakeLists.txt @${REINPLACE_CMD} -e '17,19d ; /AbslStringify/,+10d' \ ${WRKSRC}/ortools/base/logging.h do-install: # by default cmake installs the whole or-tools project without the python part, so extract the wheel and install python files manually here ${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} cd ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} && \ unzip ${BUILD_WRKSRC}/python/dist/ortools-${DISTVERSION}*.whl && \ ${RM} -rf ortools-*.dist-info ${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -name "*.so" -o -name "*.so.*" | ${XARGS} ${STRIP_CMD} run-examples: # one of the examples fail: https://github.com/google/or-tools/issues/3463 .for e in arc_flow_cutting_stock_sat.py bus_driver_scheduling_sat.py cover_rectangle_sat.py cvrptw_plot.py qubo_sat.py # list is from examples/python/CMakeLists.txt @cd ${WRKSRC}/examples/python && \ ${ECHO} "==> Running ${PORTNAME} test ${e} ..." && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${e} && \ ${ECHO} "... test ${e} succeeded" .endfor .include diff --git a/math/py-osqp/Makefile b/math/py-osqp/Makefile index 77ef754eb5b7..d32e4e01b287 100644 --- a/math/py-osqp/Makefile +++ b/math/py-osqp/Makefile @@ -1,26 +1,26 @@ PORTNAME= osqp PORTVERSION= 0.6.2.post5 PORTREVISION= 3 PORTEPOCH= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for Operator Splitting QP Solver WWW= https://osqp.org LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qdldl>0:math/py-qdldl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ cmake:devel/cmake-core RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist .include diff --git a/math/py-pdal/Makefile b/math/py-pdal/Makefile index 29e01a6c879d..cacfb72c3778 100644 --- a/math/py-pdal/Makefile +++ b/math/py-pdal/Makefile @@ -1,37 +1,37 @@ PORTNAME= pdal DISTVERSION= 3.4.5 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME}-${DISTVERSION} MAINTAINER= lbartoletti@FreeBSD.org COMMENT= PDAL Python bindings WWW= https://pypi.python.org/pypi/pdal LICENSE= BSD3CLAUSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.2.0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ pybind11>0:devel/pybind11 \ cmake:devel/cmake-core LIB_DEPENDS= libpdalcpp.so:math/pdal RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= compiler:c++11-lang ninja:build python USE_PYTHON= autoplist cython pep517 post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/libpdalpython*.so ${PYTHON_CMD} -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${PYTHON_CMD} -O -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} do-test: @cd ${WRKSRC} && py.test -v test .include diff --git a/math/py-petsc4py/Makefile b/math/py-petsc4py/Makefile index c81c339ffa50..e6e7c1aa161d 100644 --- a/math/py-petsc4py/Makefile +++ b/math/py-petsc4py/Makefile @@ -1,39 +1,39 @@ PORTNAME= petsc4py DISTVERSION= 3.22.4 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PETSc for Python WWW= https://gitlab.com/petsc/petsc LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst BROKEN_armv7= compilation fails: LLVM ERROR: out of memory -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libpetsc.so:science/PETSc -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython distutils pytest # tests fail to run, see https://gitlab.com/petsc/petsc/-/issues/1301 MAKE_ENV= PETSC_DIR=${LOCALBASE} OPTIONS_SINGLE= MPI OPTIONS_SINGLE_MPI= MPICH OPENMPI OPTIONS_DEFAULT= MPICH MPICH_USES= mpi:mpich OPENMPI_USES= mpi:openmpi TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/petsc4py/lib/PETSc${PYTHON_TAG}.so .include diff --git a/math/py-point-annotator/Makefile b/math/py-point-annotator/Makefile index 4decc69ac003..660c7e6fb534 100644 --- a/math/py-point-annotator/Makefile +++ b/math/py-point-annotator/Makefile @@ -1,25 +1,25 @@ PORTNAME= point-annotator PORTVERSION= 2.0.0 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Annotate data with labels based on the Mann-Whitney U test WWW= https://fri.uni-lj.si/en/laboratory/biolab LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/math/py-primme/Makefile b/math/py-primme/Makefile index fba524eb043d..8a553cefe22d 100644 --- a/math/py-primme/Makefile +++ b/math/py-primme/Makefile @@ -1,37 +1,37 @@ PORTNAME= primme DISTVERSION= 3.2.3 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PRIMME wrapper for Python WWW= https://www.cs.wm.edu/~andreas/software/ \ https://github.com/primme/primme LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libprimme.so:math/primme \ libblas.so:math/blas \ liblapack.so:math/lapack -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>=0:devel/py-nose@${PY_FLAVOR} USES= fortran gmake localbase:ldflags python shebangfix USE_PYTHON= autoplist cython pep517 TEST_TARGET= test BINARY_ALIAS= python2=${PYTHON_CMD} post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/primme${PYTHON_TAG}.so .include diff --git a/math/py-pwlf/Makefile b/math/py-pwlf/Makefile index 0ae769d55c21..271e484b88a0 100644 --- a/math/py-pwlf/Makefile +++ b/math/py-pwlf/Makefile @@ -1,31 +1,31 @@ PORTNAME= pwlf DISTVERSION= 2.5.1 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fit piecewise linear functions to data WWW= https://github.com/cjekel/piecewise_linear_fit_py LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.8.0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests do-test: @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} tests.py # tests as of 2.5.1: Ran 62 tests in 63.140s .include diff --git a/math/py-py-find-1st/Makefile b/math/py-py-find-1st/Makefile index 9c6088345bf8..65d330c602d5 100644 --- a/math/py-py-find-1st/Makefile +++ b/math/py-py-find-1st/Makefile @@ -1,28 +1,28 @@ PORTNAME= py-find-1st DISTVERSION= 1.1.6 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/g}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Numpy extension module for efficient search in numpy arrays WWW= https://github.com/roebel/py_find_1st LICENSE= GPLv3 BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests are broken, see https://github.com/roebel/py_find_1st/issues/13 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/utils_find_1st/find_1st${PYTHON_TAG}.so .include diff --git a/math/py-pyFFTW/Makefile b/math/py-pyFFTW/Makefile index d29bb023a68f..f9c03efb1451 100644 --- a/math/py-pyFFTW/Makefile +++ b/math/py-pyFFTW/Makefile @@ -1,34 +1,34 @@ PORTNAME= pyFFTW DISTVERSION= 0.15.0 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Pythonic wrapper around FFTW, the FFT library WWW= https://hgomersall.github.io/pyFFTW/ \ https://github.com/pyFFTW/pyFFTW LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dask>=1.0.0:devel/py-dask@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.2.0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float RUN_DEPENDS= ${PY_DEPENDS} USES= python localbase:ldflags USE_PYTHON= autoplist cython distutils pytest # tests fail with "attempted relative import with no known parent package", see https://github.com/pyFFTW/pyFFTW/issues/405 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyfftw/pyfftw${PYTHON_TAG}.so .include diff --git a/math/py-pygslodeiv2/Makefile b/math/py-pygslodeiv2/Makefile index 1ef8cad383d1..23581d722854 100644 --- a/math/py-pygslodeiv2/Makefile +++ b/math/py-pygslodeiv2/Makefile @@ -1,25 +1,25 @@ PORTNAME= pygslodeiv2 DISTVERSION= 0.9.7 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for odeiv2 in GNU Scientific Library (GSL) WWW= https://github.com/bjodah/pygslodeiv2 LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libgsl.so:math/gsl -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang localbase python USE_PYTHON= autoplist cython0 distutils pytest pre-test: @cd ${WRKSRC} && ${PYTHON_CMD} ${PYSETUP} build_ext --inplace .include diff --git a/math/py-pyhull/Makefile b/math/py-pyhull/Makefile index 11d0ac946f5f..6fb9a466edd9 100644 --- a/math/py-pyhull/Makefile +++ b/math/py-pyhull/Makefile @@ -1,24 +1,24 @@ PORTNAME= pyhull DISTVERSION= 2015.2.1 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Computation of convex hull, Delaunay triangulation and Voronoi diagram WWW= https://pypi.org/project/pyhull/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.rst -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyhull/_pyhull*.so .include diff --git a/math/py-pymc3/Makefile b/math/py-pymc3/Makefile index ef61b8517414..616496cfa617 100644 --- a/math/py-pymc3/Makefile +++ b/math/py-pymc3/Makefile @@ -1,37 +1,37 @@ PORTNAME= pymc3 DISTVERSIONPREFIX= v DISTVERSION= 3.11.5 PORTREVISION= 4 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Probabilistic programming in Python WWW= https://docs.pymc.io/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}arviz>=0.11.0:math/py-arviz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cachetools>=4.2.1:devel/py-cachetools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}deprecat>0:devel/py-deprecat@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fastprogress>=0.2.0:devel/py-fastprogress@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.24.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}patsy>=0.5.1:math/py-patsy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.3:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}semver>=2.13.0:devel/py-semver@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}theano>0:math/py-theano@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=3.7.4:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_GITHUB= yes GH_ACCOUNT= pymc-devs USE_PYTHON= distutils concurrent autoplist WRKSRC= ${WRKDIR}/pymc-${DISTVERSION} NO_ARCH= yes .include diff --git a/math/py-pyneqsys/Makefile b/math/py-pyneqsys/Makefile index 4ff400d5282d..fd5984e4114b 100644 --- a/math/py-pyneqsys/Makefile +++ b/math/py-pyneqsys/Makefile @@ -1,25 +1,25 @@ PORTNAME= pyneqsys DISTVERSION= 0.5.7 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Solver of symbolically defined systems of non-linear equations WWW= https://github.com/bjodah/pyneqsys LICENSE= BSD2CLAUSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sym>=0.3.1:math/py-sym@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.3:math/py-sympy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-pynleq2/Makefile b/math/py-pynleq2/Makefile index f1043e913ce9..09fbc781559e 100644 --- a/math/py-pynleq2/Makefile +++ b/math/py-pynleq2/Makefile @@ -1,37 +1,37 @@ PORTNAME= pynleq2 DISTVERSION= 0.0.2 PORTREVISION= 9 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for NLEQ2 algorithm's fortran implementation WWW= https://github.com/bjodah/pynleq2 LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= fortran python USE_PYTHON= distutils autoplist USE_GITHUB= nodefault GH_TUPLE= PySCeS:pysces:0.9.8:fortran FORTRAN_FILES= linalg_nleq2.f nleq2.f wnorm.f zibconst.f zibmon.f zibsec.f post-patch: @${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|' ${WRKSRC}/setup.py pre-build: # compile fortran files into a static library because distutils fails while doing this @${MKDIR} ${WRKDIR}/.fbuild && \ cd ${WRKDIR}/.fbuild && \ ${FC} -c ${CFLAGS} -fPIC ${FORTRAN_FILES:C,^,${WRKSRC_fortran}/pysces/nleq2/,} && \ ${AR} -qc libff.a ${FORTRAN_FILES:S/.f/.o/} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/nleq2*.so .include diff --git a/math/py-pynndescent/Makefile b/math/py-pynndescent/Makefile index 9e4f9b8f6528..a0ea1c5acac4 100644 --- a/math/py-pynndescent/Makefile +++ b/math/py-pynndescent/Makefile @@ -1,27 +1,27 @@ PORTNAME= pynndescent DISTVERSION= 0.5.13 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python nearest neighbor descent for approximate nearest neighbors WWW= https://github.com/lmcinnes/pynndescent LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>0.11:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}llvmlite>=0.30:devel/py-llvmlite@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.51.2:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.18:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # 1 test fails, see https://github.com/lmcinnes/pynndescent/issues/239 NO_ARCH= yes .include diff --git a/math/py-pyodeint/Makefile b/math/py-pyodeint/Makefile index b43f1d70ac27..5ad4de32069a 100644 --- a/math/py-pyodeint/Makefile +++ b/math/py-pyodeint/Makefile @@ -1,29 +1,29 @@ PORTNAME= pyodeint DISTVERSION= 0.10.7 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for odeint from boost WWW= https://github.com/bjodah/pyodeint LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${LOCALBASE}/include/boost/config.hpp:devel/boost-libs -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang localbase python USE_PYTHON= distutils autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/pyodeint/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyodeint/_odeint${PYTHON_TAG}.so .include diff --git a/math/py-pyodesys/Makefile b/math/py-pyodesys/Makefile index 201e30df6793..314ee06fcddd 100644 --- a/math/py-pyodesys/Makefile +++ b/math/py-pyodesys/Makefile @@ -1,44 +1,44 @@ PORTNAME= pyodesys DISTVERSION= 0.14.5 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Straightforward numerical integration of ODE systems from Python WWW= https://github.com/bjodah/pyodesys LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.5:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}notebook>=5.7.8:www/py-notebook@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.2.3:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sym>=0.3.7:math/py-sym@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.5.1:math/py-sympy@${PY_FLAVOR} \ ${EXTRA_RUN_DEPENDS} EXTRAS_RUN_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.2:devel/py-pycodeexport@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.9:devel/py-pycompilation@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.1:math/py-pygslodeiv2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.1:math/py-pyodeint@${PY_FLAVOR} # TODO pycvodes>=0.13.1 - doesn't build with sundials TEST_DEPENDS= ${LOCALBASE}/include/boost/numeric/ublas/matrix.hpp:devel/boost-libs \ ${LOCALBASE}/include/gsl/gsl_errno.h:math/gsl USES= display:test localbase:ldflags python shebangfix USE_PYTHON= distutils autoplist pytest # tests can't run because of missing optional deps like pycvodes which doesn't build with latest sundials SHEBANG_GLOB= *.py TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes BINARY_ALIAS= python3=${PYTHON_CMD} .include diff --git a/math/py-pyrr/Makefile b/math/py-pyrr/Makefile index e12341cab623..40fb4130070e 100644 --- a/math/py-pyrr/Makefile +++ b/math/py-pyrr/Makefile @@ -1,30 +1,30 @@ PORTNAME= pyrr DISTVERSION= 0.10.3 PORTREVISION= 3 CATEGORIES= math #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= 3D mathematical functions using NumPy WWW= https://github.com/adamlwgriffiths/Pyrr LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}multipledispatch>0:devel/py-multipledispatch@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= adamlwgriffiths GH_PROJECT= Pyrr NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests .include diff --git a/math/py-pysym/Makefile b/math/py-pysym/Makefile index 1280a0aba623..011fb729a51c 100644 --- a/math/py-pysym/Makefile +++ b/math/py-pysym/Makefile @@ -1,22 +1,22 @@ PORTNAME= pysym DISTVERSION= 0.2.3 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Prototype package for symbolic manipulation WWW= https://github.com/bjodah/pysym LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-pytensor/Makefile b/math/py-pytensor/Makefile index 5a1591977142..9431f27f1fb2 100644 --- a/math/py-pytensor/Makefile +++ b/math/py-pytensor/Makefile @@ -1,40 +1,40 @@ PORTNAME= pytensor DISTVERSION= 2.34.0 # last tag not requiring numpy-2.x PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Optimizing compiler for evaluating mathematical expressions WWW= https://pytensor.readthedocs.io/en/latest/ \ https://github.com/pymc-devs/pytensor LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/doc/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}versioneer>=0.29:devel/py-versioneer@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cons>0:devel/py-cons@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}etuples>0:devel/py-etuples@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}filelock>=3.15:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}logical-unification>0:math/py-logical-unification@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}miniKanren>0:devel/py-miniKanren@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.57:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/pymc-devs/pytensor/issues/355 post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pytensor/scan/scan_perform${PYTHON_TAG}.so # BUG: installs the file /usr/local/lib/python3.9/site-packages/bin/__init__.py, see https://github.com/pymc-devs/pytensor/issues/356 # tests as of : 5 failed, 3 passed, 232 errors in 292.68s (0:04:52), see https://github.com/pymc-devs/pytensor/issues/2027 .include diff --git a/math/py-python-fcl/Makefile b/math/py-python-fcl/Makefile index 48e86f2d346f..24cab36d095b 100644 --- a/math/py-python-fcl/Makefile +++ b/math/py-python-fcl/Makefile @@ -1,29 +1,29 @@ PORTNAME= python-fcl PORTVERSION= 0.0.12 PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= db@FreeBSD.org COMMENT= Python bindings for the Flexible Collision Library WWW= https://libraries.io/pypi/python-fcl LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libfcl05.so:math/fcl05 \ liboctomap.so:math/octomap -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang eigen:3 python USE_PYTHON= autoplist concurrent cython0 distutils PYDISTUTILS_BUILD_TARGET= build_ext post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/fcl/fcl*.so .include diff --git a/math/py-python-louvain/Makefile b/math/py-python-louvain/Makefile index 765291bd07c3..463e460a2eed 100644 --- a/math/py-python-louvain/Makefile +++ b/math/py-python-louvain/Makefile @@ -1,22 +1,22 @@ PORTNAME= python-louvain DISTVERSION= 0.16 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Louvain algorithm for community detection WWW= https://github.com/taynaud/python-louvain LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/math/py-python-picard/Makefile b/math/py-python-picard/Makefile index f919aac4c5ca..35676849e892 100644 --- a/math/py-python-picard/Makefile +++ b/math/py-python-picard/Makefile @@ -1,27 +1,27 @@ PORTNAME= python-picard DISTVERSION= 0.7 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Preconditoned ICA algorithm for Real Data WWW= https://pierreablin.github.io/picard/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numexpr>0:math/py-numexpr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/math/py-pywavelets/Makefile b/math/py-pywavelets/Makefile index 6861a3c779f0..90b418b74a01 100644 --- a/math/py-pywavelets/Makefile +++ b/math/py-pywavelets/Makefile @@ -1,25 +1,25 @@ PORTNAME= pywavelets PORTVERSION= 1.9.0 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= makc@FreeBSD.org COMMENT= Discrete Wavelet Transforms in Python WWW= https://github.com/PyWavelets/pywt LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meson-python>=0.16:devel/meson-python@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython pep517 post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pywt/_extensions/*.so .include diff --git a/math/py-qats/Makefile b/math/py-qats/Makefile index 4b551deaf480..88eaf16378bb 100644 --- a/math/py-qats/Makefile +++ b/math/py-qats/Makefile @@ -1,45 +1,45 @@ PORTNAME= qats DISTVERSIONPREFIX= v DISTVERSION= 5.2.1 PORTREVISION= 2 CATEGORIES= math #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for efficient processing and visualization of time series WWW= https://github.com/dnvgl/qats LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}poetry-core>0:devel/py-poetry-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}poetry-dynamic-versioning>0:devel/py-poetry-dynamic-versioning@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}QtPy>=1.9.0:devel/py-QtPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}furo>=2022.12.7:textproc/py-furo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=3.5.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}myst-parser>=0.18.1:textproc/py-myst-parser@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}npTDMS>=1.1.0:misc/py-npTDMS@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}openpyxl>=3.0.5:textproc/py-openpyxl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymatreader>=0.0.24:misc/py-pymatreader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyside2>=5.15.2:devel/pyside2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.2:science/py-scipy@${PY_FLAVOR} USES= pyqt:5 python USE_PYTHON= pep517 concurrent autoplist pytest USE_PYQT= pyqt5 USE_GITHUB= yes GH_ACCOUNT= dnvgl NO_ARCH= yes post-patch: @${REINPLACE_CMD} -e 's/version = "0.0.0"/version = "${DISTVERSION}"/' ${WRKSRC}/pyproject.toml # tests as of 5.2.1: 121 passed, 26 warnings in 26.41s .include diff --git a/math/py-qdldl/Makefile b/math/py-qdldl/Makefile index 3a78ac7de394..0e602206b356 100644 --- a/math/py-qdldl/Makefile +++ b/math/py-qdldl/Makefile @@ -1,37 +1,37 @@ PORTNAME= qdldl PORTVERSION= 0.1.7.post5 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= QDLDL free LDL factorization routine for linear systems: Ax = b WWW= https://github.com/oxfordcontrol/qdldl-python/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_armv7= error: no matching function for call to 'amd_l_order', see https://github.com/oxfordcontrol/qdldl-python/issues/15 BROKEN_i386= error: no matching function for call to 'amd_l_order', see https://github.com/oxfordcontrol/qdldl-python/issues/15 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ cmake:devel/cmake-core -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= pytest:devel/py-pytest@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= distutils autoplist TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/qdldl.cpython-*.so do-test: install # this is required for some reason, and TEST_ENV doesn't work @cd ${WRKSRC} && pytest # tests as of 0.1.7.post5: 4 failed, 5 passed in 12.28s, see https://github.com/osqp/qdldl-python/issues/53 .include diff --git a/math/py-resample/Makefile b/math/py-resample/Makefile index f9df41224cdb..d5eda4a50071 100644 --- a/math/py-resample/Makefile +++ b/math/py-resample/Makefile @@ -1,30 +1,30 @@ PORTNAME= resample PORTVERSION= 1.10.2 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Resampling-based inference in Python WWW= https://github.com/scikit-hep/resample LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/math/py-rustworkx/Makefile b/math/py-rustworkx/Makefile index 4b4c2388a7be..3b74406a4667 100644 --- a/math/py-rustworkx/Makefile +++ b/math/py-rustworkx/Makefile @@ -1,140 +1,140 @@ PORTNAME= rustworkx DISTVERSION= 0.17.1 PORTREVISION= 7 CATEGORIES= math python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= High performance Python graph library implemented in Rust WWW= https://github.com/Qiskit/rustworkx LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-rust>0:devel/py-setuptools-rust@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=5.4:graphics/py-pillow@${PY_FLAVOR} #${PYTHON_PKGNAMEPREFIX}tox>0:devel/py-tox@${PY_FLAVOR} USES= cargo python USE_PYTHON= autoplist distutils pytest USE_GITHUB= yes GH_ACCOUNT= Qiskit CARGO_CRATES= adler2-2.0.0 \ aho-corasick-1.1.3 \ allocator-api2-0.2.21 \ arbitrary-1.4.1 \ autocfg-1.4.0 \ bitflags-2.9.0 \ cc-1.2.18 \ cfg-if-1.0.0 \ crc32fast-1.4.2 \ crossbeam-deque-0.8.6 \ crossbeam-epoch-0.9.18 \ crossbeam-utils-0.8.21 \ derive_arbitrary-1.4.1 \ either-1.15.0 \ env_logger-0.8.4 \ equivalent-1.0.2 \ fixedbitset-0.5.7 \ flate2-1.1.1 \ foldhash-0.1.5 \ getrandom-0.2.15 \ getrandom-0.3.2 \ hashbrown-0.15.2 \ heck-0.5.0 \ hermit-abi-0.3.9 \ indexmap-2.9.0 \ indoc-2.0.6 \ itertools-0.13.0 \ itertools-0.14.0 \ itoa-1.0.15 \ jobserver-0.1.33 \ libc-0.2.171 \ libfuzzer-sys-0.4.9 \ libm-0.2.15 \ log-0.4.27 \ matrixmultiply-0.3.9 \ memchr-2.7.4 \ memoffset-0.9.1 \ miniz_oxide-0.8.7 \ ndarray-0.16.1 \ ndarray-stats-0.6.0 \ noisy_float-0.2.0 \ num-bigint-0.4.6 \ num-complex-0.4.6 \ num-integer-0.1.46 \ num-traits-0.2.19 \ num_cpus-1.16.0 \ numpy-0.24.0 \ once_cell-1.21.3 \ petgraph-0.8.1 \ portable-atomic-1.11.0 \ portable-atomic-util-0.2.4 \ ppv-lite86-0.2.21 \ priority-queue-2.3.1 \ proc-macro2-1.0.94 \ pyo3-0.24.1 \ pyo3-build-config-0.24.1 \ pyo3-ffi-0.24.1 \ pyo3-macros-0.24.1 \ pyo3-macros-backend-0.24.1 \ quick-xml-0.37.4 \ quickcheck-1.0.3 \ quickcheck_macros-1.1.0 \ quote-1.0.40 \ r-efi-5.2.0 \ rand-0.8.5 \ rand-0.9.1 \ rand_chacha-0.3.1 \ rand_chacha-0.9.0 \ rand_core-0.6.4 \ rand_core-0.9.3 \ rand_distr-0.5.1 \ rand_pcg-0.9.0 \ rawpointer-0.2.1 \ rayon-1.10.0 \ rayon-cond-0.4.0 \ rayon-core-1.12.1 \ regex-1.11.1 \ regex-automata-0.4.9 \ regex-syntax-0.8.5 \ rustc-hash-2.1.1 \ ryu-1.0.20 \ serde-1.0.219 \ serde_derive-1.0.219 \ serde_json-1.0.140 \ shlex-1.3.0 \ smallvec-1.15.0 \ sprs-0.11.3 \ syn-2.0.100 \ target-lexicon-0.13.2 \ unicode-ident-1.0.18 \ unindent-0.2.4 \ wasi-0.11.0+wasi-snapshot-preview1 \ wasi-0.14.2+wasi-0.2.4 \ wit-bindgen-rt-0.39.0 \ zerocopy-0.8.24 \ zerocopy-derive-0.8.24 CARGO_BUILD= no CARGO_INSTALL= no CARGO_TEST= no CARGO_TARGET_DIR= ${WRKSRC}/target MAKE_ENV= ${CARGO_ENV} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${BUILD_WRKDIR} PLIST_FILES= ${PYTHON_SITELIBDIR}/rustworkx/rustworkx${PYTHON_TAG}.so # workaround for https://github.com/Qiskit/rustworkx/issues/654 BINARY_ALIAS= python3=${PYTHON_CMD} #do-test: # this runs tests in the fixed venv # @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} tox -epy .include diff --git a/math/py-scikit-umfpack/Makefile b/math/py-scikit-umfpack/Makefile index 38c3bd2755bb..9fbd67ad65ce 100644 --- a/math/py-scikit-umfpack/Makefile +++ b/math/py-scikit-umfpack/Makefile @@ -1,46 +1,46 @@ PORTNAME= scikit-umfpack DISTVERSION= 0.4.2 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/g}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface to UMFPACK sparse direct solver WWW= https://scikit-umfpack.github.io/scikit-umfpack/ \ https://github.com/scikit-umfpack/scikit-umfpack LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ swig:devel/swig LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libcblas.so:math/cblas \ libopenblas.so:math/openblas \ libumfpack.so:math/suitesparse-umfpack -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= fortran localbase:ldflags python USE_PYTHON= pep517 cython3 autoplist pytest PEP517_BUILD_CONFIG_SETTING= "-Cbuild-dir=_build" CFLAGS+= -I/usr/local/include/suitesparse CXXFLAGS+= -I/usr/local/include/suitesparse post-patch: ${REINPLACE_CMD} \ -e "s|swig_inc_args = \[\]|swig_inc_args = [\'-I${LOCALBASE}/include/suitesparse\']|" \ ${WRKSRC}/scikits/umfpack/meson.build post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/scikits/umfpack/__umfpack${PYTHON_SOABI}.so pre-test: ${CP} -a ${WRKSRC}/_build/ ${WRKSRC} .include diff --git a/math/py-scs/Makefile b/math/py-scs/Makefile index cbbbee9e35bb..bced5719061c 100644 --- a/math/py-scs/Makefile +++ b/math/py-scs/Makefile @@ -1,33 +1,33 @@ PORTNAME= scs DISTVERSION= 3.2.9 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Splitting conic solver for Python WWW= https://github.com/cvxgrp/scs LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libopenblas.so:math/openblas -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} USES= python blaslapack:openblas fortran localbase:ldflags pkgconfig # fortran is for openblas USE_PYTHON= pep517 autoplist pytest # 2 tests fail, see https://github.com/cvxgrp/scs/issues/273 CONFIGURE_ENV= BLAS_LAPACK_LIBS="openblas" MAKE_ENV= ${CONFIGURE_ENV} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/scs/_scs_direct${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/scs/_scs_indirect${PYTHON_TAG}.so .include diff --git a/math/py-seriate/Makefile b/math/py-seriate/Makefile index 0a68ec1d7933..eff6650d65e1 100644 --- a/math/py-seriate/Makefile +++ b/math/py-seriate/Makefile @@ -1,26 +1,26 @@ PORTNAME= seriate DISTVERSION= 1.1.2 PORTREVISION= 3 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Optimal ordering of elements in a set given their distance matrix WWW= https://github.com/src-d/seriate LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.md -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}or-tools>0:math/py-or-tools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_GITHUB= yes GH_ACCOUNT= src-d USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-slepc4py/Makefile b/math/py-slepc4py/Makefile index 6b408fb0b223..4164cb0a6bf4 100644 --- a/math/py-slepc4py/Makefile +++ b/math/py-slepc4py/Makefile @@ -1,33 +1,33 @@ PORTNAME= slepc4py DISTVERSION= 3.22.2 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= SLEPc for Python WWW= https://bitbucket.org/slepc/slepc4py LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.rst -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}petsc4py>0:math/py-petsc4py@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} LIB_DEPENDS= libmpich.so:net/mpich \ libpetsc.so:science/PETSc \ libslepc.so:math/slepc -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= fortran python USE_PYTHON= autoplist cython distutils pytest MAKE_ENV= PETSC_DIR=${LOCALBASE} SLEPC_DIR=${LOCALBASE} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/slepc4py/lib/SLEPc${PYTHON_TAG}.so .include diff --git a/math/py-spectral/Makefile b/math/py-spectral/Makefile index 335baa08ad71..5eb4c1d73c31 100644 --- a/math/py-spectral/Makefile +++ b/math/py-spectral/Makefile @@ -1,26 +1,26 @@ PORTNAME= spectral DISTVERSION= 0.24 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Spectral Python is a Python module for hyperspectral image processing WWW= https://www.spectralpython.net/ LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 0.24: 2 passed in 25.66s .include diff --git a/math/py-ssm/Makefile b/math/py-ssm/Makefile index 979e2b7c4cd7..025ea3683f73 100644 --- a/math/py-ssm/Makefile +++ b/math/py-ssm/Makefile @@ -1,32 +1,32 @@ PORTNAME= ssm DISTVERSION= 0.0.1 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Bayesian learning and inference for state space models WWW= https://github.com/lindermanlab/ssm LICENSE= MIT -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}autograd>0:math/py-autograd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}seaborn>0:math/py-seaborn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython concurrent autoplist post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*.so .include diff --git a/math/py-sym/Makefile b/math/py-sym/Makefile index f544a6f58b73..f66641803a11 100644 --- a/math/py-sym/Makefile +++ b/math/py-sym/Makefile @@ -1,26 +1,26 @@ PORTNAME= sym DISTVERSION= 0.3.7 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Unified wrapper for symbolic manipulation libraries in Python WWW= https://github.com/bjodah/sym LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes TEST_WRKSRC= ${WRKSRC}/sym/tests # tests as of 0.3.7: 117 passed, 3 warnings in 0.91s .include diff --git a/math/py-theano/Makefile b/math/py-theano/Makefile index c62a76d33d04..6aecbcfea736 100644 --- a/math/py-theano/Makefile +++ b/math/py-theano/Makefile @@ -1,31 +1,31 @@ PORTNAME= theano DISTVERSION= 1.0.5 PORTREVISION= 4 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= Theano-${DISTVERSION} MAINTAINER= demon@FreeBSD.org COMMENT= Optimizing compiler for evaluating math expressions on CPUs and GPUs WWW= http://deeplearning.net/software/theano/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.8.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.9.0:devel/py-six@${PY_FLAVOR} USES= python USE_PYTHON= concurrent distutils autoplist NO_ARCH= yes SUB_FILES= pkg-message SUB_LIST= CXX=${CXX} post-patch: @${REINPLACE_CMD} -e 's|/bin/bash|/bin/sh|; s|python |${PYTHON_CMD} |' \ ${WRKSRC}/theano/misc/check_blas_many.sh .include diff --git a/math/py-timple/Makefile b/math/py-timple/Makefile index b9ae1913f15e..999c839efb5a 100644 --- a/math/py-timple/Makefile +++ b/math/py-timple/Makefile @@ -1,22 +1,22 @@ PORTNAME= timple PORTVERSION= 0.1.8 PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jgh@FreeBSD.org COMMENT= Extended functionality for plotting timedelta values with Matplotlib WWW= https://github.com/theOehrly/Timple LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-torchsde/Makefile b/math/py-torchsde/Makefile index d17f14fcfb47..63af3da0e4e5 100644 --- a/math/py-torchsde/Makefile +++ b/math/py-torchsde/Makefile @@ -1,27 +1,27 @@ PORTNAME= torchsde DISTVERSION= 0.2.6 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= SDE solvers and stochastic adjoint sensitivity analysis in PyTorch WWW= https://github.com/google-research/torchsde LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=1.6.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.5:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}trampoline>=0.1.2:devel/py-trampoline@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/math/py-umap-learn/Makefile b/math/py-umap-learn/Makefile index 562ad2b98c5e..a8df41a0ab3c 100644 --- a/math/py-umap-learn/Makefile +++ b/math/py-umap-learn/Makefile @@ -1,26 +1,26 @@ PORTNAME= umap-learn DISTVERSION= 0.5.7 PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Uniform Manifold Approximation and Projection WWW= https://github.com/lmcinnes/umap LICENSE= BSD3CLAUSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>=0.51.2:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pynndescent>=0.5:math/py-pynndescent@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.22:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/math/py-uncertainties/Makefile b/math/py-uncertainties/Makefile index 039e6057fe6d..a619574ec077 100644 --- a/math/py-uncertainties/Makefile +++ b/math/py-uncertainties/Makefile @@ -1,30 +1,30 @@ PORTNAME= uncertainties DISTVERSION= 3.2.2 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Calculations with uncertainties on the quantities involved WWW= https://uncertainties-python-package.readthedocs.io/en/latest/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/math/py-unyt/Makefile b/math/py-unyt/Makefile index 1d34d2bdaa65..3bf079be1770 100644 --- a/math/py-unyt/Makefile +++ b/math/py-unyt/Makefile @@ -1,29 +1,29 @@ PORTNAME= unyt DISTVERSION= 3.0.3 PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for handling numpy arrays with units WWW= https://github.com/yt-project/unyt LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=7.0.1:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.9:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.7:math/py-sympy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes TEST_WRKSRC= ${WRKSRC}/unyt/tests .include diff --git a/math/py-yt/Makefile b/math/py-yt/Makefile index 8b95e75471d3..de044ff2c252 100644 --- a/math/py-yt/Makefile +++ b/math/py-yt/Makefile @@ -1,49 +1,49 @@ PORTNAME= yt DISTVERSION= 4.3.1 PORTREVISION= 4 CATEGORIES= math astro python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Analysis and visualization toolkit for volumetric data WWW= https://yt-project.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING.txt # dependencies are in setup.cfg -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ewah-bool-utils>=1.0.2:devel/py-ewah-bool-utils@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cmyt>=0.2.2:math/py-cmyt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ewah-bool-utils>=1.0.2:devel/py-ewah-bool-utils@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>=1.0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}more-itertools>=8.4:devel/py-more-itertools@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.9:devel/py-packaging@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>=2.0.2:devel/py-pyparsing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.2:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}toml>=0.10.2:textproc/py-toml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tomli-w>=0.4.0:textproc/py-tomli-w@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=3.4.0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}unyt>=2.8.0:math/py-unyt@${PY_FLAVOR} USES= dos2unix localbase python USE_PYTHON= autoplist concurrent cython distutils post-patch: @${REINPLACE_CMD} -e "s|check_for_pyembree() is not None|False|" \ ${WRKSRC}/setup.py @${REINPLACE_CMD} -e "s|check_for_openmp() is True|True|" \ ${WRKSRC}/setup.py @${REINPLACE_CMD} -e "s|\['-fopenmp', filename\]|['-I${LOCALBASE}/include', '-L${LOCALBASE}/lib', '-lm', '-fopenmp', filename]|" \ ${WRKSRC}/setupext.py post-install: @${STRIP_CMD} $$(${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name "*.so") .include diff --git a/math/spot/Makefile b/math/spot/Makefile index 02e3edf44022..2277906f38a9 100644 --- a/math/spot/Makefile +++ b/math/spot/Makefile @@ -1,49 +1,49 @@ PORTNAME= spot DISTVERSION= 2.14.5 CATEGORIES= math MASTER_SITES= http://www.lrde.epita.fr/dload/${PORTNAME}/ MAINTAINER= yuri@FreeBSD.org COMMENT= Library for omega automata manipulation and model checking WWW= https://spot.lrde.epita.fr LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ syfco:math/hs-syfco USES= charsetfix compiler:c++17-lang gmake libtool python:test USE_LDCONFIG= yes GNU_CONFIGURE= yes GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share .if !defined(WITH_PYTHON) # math/py-spot is a separate port but tests don't work there. To test run: make test WITH_PYTHON=yes CONFIGURE_ARGS= --disable-python --disable-static .else CONFIGURE_ARGS= --disable-static .endif INSTALL_TARGET= install-strip TEST_TARGET= check OPTIONS_DEFINE= DOCS PORTDOCS= tl.pdf post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so # ============================================================================ # Testsuite summary for spot 2.14.5 # ============================================================================ # TOTAL: 211 # PASS: 189 # SKIP: 20 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 .include diff --git a/math/xtensor-python/Makefile b/math/xtensor-python/Makefile index e655514f484f..4117580f6129 100644 --- a/math/xtensor-python/Makefile +++ b/math/xtensor-python/Makefile @@ -1,39 +1,39 @@ PORTNAME= xtensor-python DISTVERSION= 0.29.0 CATEGORIES= math python MAINTAINER= yuri@FreeBSD.org COMMENT= Python bindings for xtensor # it is called "bindings" but it doesn't install python modules, it's rather a header-only library to use xtensor from python extensions WWW= https://github.com/xtensor-stack/xtensor-python LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE HPP_DEPENDS= xtensor>0:math/xtensor \ pybind11>0:devel/pybind11 \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= ${HPP_DEPENDS} RUN_DEPENDS= ${HPP_DEPENDS} TEST_DEPENDS= googletest>0:devel/googletest \ pybind11>0:devel/pybind11 USES= cmake compiler:c++20-lang localbase:ldflags python USE_GITHUB= yes GH_ACCOUNT= xtensor-stack CXXFLAGS+= -I${PYTHON_INCLUDEDIR} -I${PYTHON_SITELIBDIR}/numpy/core/include # workaround for https://github.com/xtensor-stack/xtensor-python/issues/272 LDFLAGS+= -lpython${PYTHON_VER} NO_BUILD= yes NO_ARCH= yes do-test: @cd ${WRKSRC}/test && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} . && \ ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} && \ ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} xtest # tests as of 0.29.0: [ PASSED ] 55 tests. .include diff --git a/misc/adios2/Makefile b/misc/adios2/Makefile index 91fc09b8ad87..47ca4550638d 100644 --- a/misc/adios2/Makefile +++ b/misc/adios2/Makefile @@ -1,64 +1,64 @@ PORTNAME= adios2 DISTVERSIONPREFIX= v DISTVERSION= 2.10.2 PORTREVISION= 6 CATEGORIES= misc science MAINTAINER= yuri@FreeBSD.org COMMENT= Next generation of ADIOS developed in the Exascale Computing Program WWW= https://github.com/ornladios/ADIOS2 LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_armv7= compilation fails: non-constant-expression cannot be narrowed from type 'uint64_t' (aka 'unsigned long long') to 'size_t' (aka 'unsigned int') in initializer list [-Wc++11-narrowing] BROKEN_i386= constant expression evaluates to 18446744073709551613 which cannot be narrowed to type 'unsigned int': https://github.com/ornladios/ADIOS2/issues/2469 BROKEN_powerpc= constant expression evaluates to 18446744073709551613 which cannot be narrowed to type 'unsigned int': https://github.com/ornladios/ADIOS2/issues/2469 -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpi4py-mpich>=3.0.3:net/py-mpi4py-mpich@${PY_FLAVOR} BUILD_DEPENDS= bash:shells/bash \ pybind11>0:devel/pybind11 \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.4:devel/py-pybind11@${PY_FLAVOR} \ ${PY_DEPENDS} LIB_DEPENDS= libblosc2.so:archivers/c-blosc2 \ libepoll-shim.so:devel/libepoll-shim \ libfabric.so:net/libfabric \ libhdf5.so:science/hdf5 \ liblz4.so:archivers/liblz4 \ libmpi.so:net/mpich \ libpng16.so:graphics/png \ libsodium.so:security/libsodium \ libzmq.so:net/libzmq4 \ libzfp.so:devel/zfp \ libzstd.so:archivers/zstd RUN_DEPENDS= bash:shells/bash \ ${PY_DEPENDS} USES= bison cmake:testing compiler:c++11-lang fortran localbase:ldflags pkgconfig \ perl5 python shebangfix sqlite USE_LDCONFIG= yes SHEBANG_FILES= cmake/install/post/adios2-config.pre.sh.in cmake/install/post/generate-adios2-config.sh.in \ source/utils/adios_reorganize/adios2_reorganize_wrapper source/utils/adios2_deactivate_bp SHEBANG_GLOB= *.sh *.py USE_GITHUB= yes GH_ACCOUNT= ornladios GH_PROJECT= ADIOS2 CMAKE_ARGS= -DFREEBSD_PYTHON_VERSION=${PYTHON_VER} CMAKE_OFF= BUILD_TESTING ADIOS2_BUILD_EXAMPLES LDFLAGS+= -lepoll-shim OPTIONS_DEFINE= DOCS DOCSDIR= ${PREFIX}/share/doc/ADIOS2 PORTDOCS= * # several tests fail, see https://github.com/ornladios/ADIOS2/issues/3286 post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/adios2/bindings/adios2_bindings${PYTHON_TAG}.so .include diff --git a/misc/caffe/Makefile b/misc/caffe/Makefile index 3ae2024eed4f..651755a7a0ad 100644 --- a/misc/caffe/Makefile +++ b/misc/caffe/Makefile @@ -1,54 +1,54 @@ PORTNAME= caffe DISTVERSION= 1.0-136 DISTVERSIONSUFFIX= -g9b891540 PORTREVISION= 24 CATEGORIES= misc # machine-learning PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES+= 7f503bd9a19758a173064e299ab9d4cac65ed60f.patch:-p1 # opencv4 fix PATCHFILES+= 1b317bab3f6413a1b5d87c9d3a300d785a4173f9.patch:-p1 # protobuf3 fix MAINTAINER= yuri@FreeBSD.org COMMENT= Fast open framework for deep learning WWW= https://caffe.berkeleyvision.org/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= bash:shells/bash \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libsnappy.so:archivers/snappy \ libleveldb.so:databases/leveldb \ liblmdb.so:databases/lmdb \ libboost_thread.so:devel/boost-libs \ ${PY_BOOST} \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libprotobuf.so:devel/protobuf \ libopencv_highgui.so:graphics/opencv \ libopenblas.so:math/openblas \ libhdf5.so:science/hdf5 -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydotplus>0:graphics/py-pydotplus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} USES= cmake compiler:c++17-lang fortran localbase:ldflags pkgconfig python USE_CXXSTD= c++17 USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= BVLC CMAKE_ARGS= -DBLAS=Open \ -DPYTHON_EXECUTABLE=${PYTHON_CMD} \ -DFREEBSD_PYTHONPREFIX_SITELIBDIR=${PYTHONPREFIX_SITELIBDIR} CXXFLAGS+= -DGLOG_USE_GLOG_EXPORT LDFLAGS+= -lpython${PYTHON_VER} PORTSCOUT= limit:^[0-9].*[0-9]$$ # should begin and end with a digit to prevent tags like rcnn-release and rc5 .include diff --git a/misc/comfyui/Makefile b/misc/comfyui/Makefile index 90b0cb7361fc..b69d500a7d2e 100644 --- a/misc/comfyui/Makefile +++ b/misc/comfyui/Makefile @@ -1,101 +1,101 @@ PORTNAME= comfyui DISTVERSIONPREFIX= v DISTVERSION= 0.18.0 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MAINTAINER= yuri@FreeBSD.org COMMENT= Powerful and modular stable diffusion GUI with graph/nodes interface WWW= https://www.comfy.org/ \ https://github.com/Comfy-Org/ComfyUI LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}aiohttp>=3.11.8:www/py-aiohttp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}alembic>0:databases/py-alembic@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}av>=14.2.0:multimedia/py-av@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}blake3>0:security/py-blake3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}comfy-aimdo>=0.2.12:misc/py-comfy-aimdo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}comfy-kitchen>=0.2.8:misc/py-comfy-kitchen@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}comfyui-embedded-docs>=0.4.3:misc/py-comfyui-embedded-docs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}comfyui-frontend-package>=1.41.21:misc/py-comfyui-frontend-package@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}comfyui-workflow-templates>=0.9.26:misc/py-comfyui-workflow-templates@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}einops>0:misc/py-einops@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}glfw>0:graphics/py-glfw@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}kornia>=0.7.1:graphics/py-kornia@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic-settings>=2.0:devel/py-pydantic-settings@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>0:graphics/py-PyOpenGL@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>=0.4.2:misc/py-safetensors@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sentencepiece>0:textproc/py-sentencepiece@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}simpleeval>0:devel/py-simpleeval@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spandrel>0:misc/py-spandrel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy20>0:databases/py-sqlalchemy20@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tokenizers>=0.13.3:textproc/py-tokenizers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchaudio>0:audio/py-torchaudio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchsde>0:math/py-torchsde@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>=4.50.3:misc/py-transformers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yarl>=1.18.0:www/py-yarl@${PY_FLAVOR} \ USES= python shebangfix USE_GITHUB= yes GH_ACCOUNT= Comfy-Org GH_PROJECT= ComfyUI SHEBANG_FILES= *.py NO_ARCH= yes NO_BUILD= yes COMFYUI_DIR= ${PREFIX}/share/comfyui # comfyui needs to write into some subfolders of its installation directory, so we set the writable dir to /var/db/comfyui and create symlinks to there WRITABLE_DIR= /var/db/${PORTNAME} do-install: # copy all files to ${COMFYUI_DIR} ${MKDIR} ${STAGEDIR}${COMFYUI_DIR} cd ${WRKSRC} && ${COPYTREE_SHARE} . ${STAGEDIR}${COMFYUI_DIR} # create the comfyui script ( \ ${ECHO} '#!/bin/sh' && \ ${ECHO} ${PYTHON_CMD} ${COMFYUI_DIR}/main.py --disable-dynamic-vram --cpu '"$$@"' \ ) > ${STAGEDIR}${PREFIX}/bin/comfyui ${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/comfyui # remove unnecessary files ${RM} -r ${STAGEDIR}${COMFYUI_DIR}/.git* ${RM} -r ${STAGEDIR}${COMFYUI_DIR}/.ci ${RM} -r ${STAGEDIR}${COMFYUI_DIR}/.coderabbit.yaml # create writable symlinks ${MKDIR} ${STAGEDIR}${WRITABLE_DIR} ${MKDIR} ${STAGEDIR}${WRITABLE_DIR}/user ${MKDIR} ${STAGEDIR}${WRITABLE_DIR}/user/default ${MKDIR} ${STAGEDIR}${WRITABLE_DIR}/temp ${RLN} -s ${STAGEDIR}${WRITABLE_DIR}/user ${STAGEDIR}${COMFYUI_DIR}/user ${RLN} -s ${STAGEDIR}${WRITABLE_DIR}/temp ${STAGEDIR}${COMFYUI_DIR}/temp .for dir in audio_encoders checkpoints clip clip_vision controlnet diffusers diffusion_models embeddings gligen hypernetworks \ latent_upscale_models loras model_patches photomaker style_models text_encoders unet upscale_models vae vae_approx ${RM} -r ${STAGEDIR}${COMFYUI_DIR}/models/${dir} ${MKDIR} ${STAGEDIR}${WRITABLE_DIR}/models/${dir} ${RLN} -s ${STAGEDIR}${WRITABLE_DIR}/models/${dir} ${STAGEDIR}${COMFYUI_DIR}/models/${dir} .endfor # move installed files to the writable location ${MV} ${STAGEDIR}${COMFYUI_DIR}/input ${STAGEDIR}${WRITABLE_DIR}/input ${RLN} -s ${STAGEDIR}${WRITABLE_DIR}/input ${STAGEDIR}${COMFYUI_DIR}/input ${MKDIR} ${STAGEDIR}${WRITABLE_DIR}/output ${RM} -r ${STAGEDIR}${COMFYUI_DIR}/output ${RLN} -s ${STAGEDIR}${WRITABLE_DIR}/output ${STAGEDIR}${COMFYUI_DIR}/output .include diff --git a/misc/mmdnn/Makefile b/misc/mmdnn/Makefile index 40e23ddac362..678077fc347b 100644 --- a/misc/mmdnn/Makefile +++ b/misc/mmdnn/Makefile @@ -1,26 +1,26 @@ PORTNAME= mmdnn DISTVERSION= 0.3.1 PORTREVISION= 4 CATEGORIES= misc python # machine-learning MAINTAINER= yuri@FreeBSD.org COMMENT= Tools to inter-operate among different deep learning frameworks WWW= https://github.com/microsoft/MMdnn LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=3.6.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.10.0:devel/py-six@${PY_FLAVOR} USES= python USE_GITHUB= yes GH_ACCOUNT= microsoft GH_PROJECT= MMdnn USE_PYTHON= distutils noflavors autoplist NO_ARCH= yes .include diff --git a/misc/py-QSpectrumAnalyzer/Makefile b/misc/py-QSpectrumAnalyzer/Makefile index ee84d7af0c39..a8ef54191420 100644 --- a/misc/py-QSpectrumAnalyzer/Makefile +++ b/misc/py-QSpectrumAnalyzer/Makefile @@ -1,40 +1,40 @@ PORTNAME= QSpectrumAnalyzer DISTVERSION= 2.1.0 PORTREVISION= 18 CATEGORIES= misc hamradio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Spectrum analyzer for multiple SDR platforms WWW= https://github.com/xmikos/qspectrumanalyzer LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyqtgraph>=0.10.0:graphics/py-pyqtgraph@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}soapy_power>=1.5.0:misc/py-soapy_power@${PY_FLAVOR} USES= fortran python pyqt:5 USE_PYQT= pyqt5 USE_PYTHON= distutils concurrent autoplist PLIST_FILES= bin/${PORTNAME:tl}.shadow post-patch: # change from Qt.py that doesn't work to PyQt5 @${FIND} ${WRKSRC} -name "*.py" | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ s|from Qt import |from PyQt5 import | ; \ s|, __binding__|| ; \ s|QtCore.Signal|QtCore.pyqtSignal| ; \ s|QtCore.Slot|QtCore.pyqtSlot|' post-install: @${MV} ${STAGEDIR}${PREFIX}/bin/${PORTNAME:tl} ${STAGEDIR}${PREFIX}/bin/${PORTNAME:tl}.shadow @(echo "#!/bin/sh"; \ echo ""; \ echo "LD_PRELOAD=${PREFIX}/lib/gcc9/libgcc_s.so ${PREFIX}/bin/${PORTNAME:tl}.shadow \"$$@\"" \ ) > ${STAGEDIR}${PREFIX}/bin/${PORTNAME:tl} @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${PORTNAME:tl} .include diff --git a/misc/py-SQCommon/Makefile b/misc/py-SQCommon/Makefile index 7f2c40a96d4f..987c082cc119 100644 --- a/misc/py-SQCommon/Makefile +++ b/misc/py-SQCommon/Makefile @@ -1,25 +1,25 @@ PORTNAME= SQCommon DISTVERSION= 0.3.2 PORTREVISION= 1 CATEGORIES= misc math python # quantum-computing, chemostry, physics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= SQCommon - skopt common optimizer API WWW= https://qat4chem.lbl.gov/software LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/misc/py-SQImFil/Makefile b/misc/py-SQImFil/Makefile index cec7712b28a1..57ea2a99ccc1 100644 --- a/misc/py-SQImFil/Makefile +++ b/misc/py-SQImFil/Makefile @@ -1,26 +1,26 @@ PORTNAME= SQImFil DISTVERSION= 0.3.7 PORTREVISION= 1 CATEGORIES= misc math python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Implicit Filtering optimization for quantum computer algorithms WWW= https://qat4chem.lbl.gov/software LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SQCommon>0:misc/py-SQCommon@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/misc/py-SQSnobFit/Makefile b/misc/py-SQSnobFit/Makefile index 5729f9a07f9c..c1517827534c 100644 --- a/misc/py-SQSnobFit/Makefile +++ b/misc/py-SQSnobFit/Makefile @@ -1,26 +1,26 @@ PORTNAME= SQSnobFit DISTVERSION= 0.4.5 PORTREVISION= 1 CATEGORIES= misc math python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Stable Noisy Optimization by Branch and FIT quantum computer algorithm WWW= https://qat4chem.lbl.gov/software LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SQCommon>0:misc/py-SQCommon@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/misc/py-SimpleSoapy/Makefile b/misc/py-SimpleSoapy/Makefile index b4a01b06134e..c5538e0656f9 100644 --- a/misc/py-SimpleSoapy/Makefile +++ b/misc/py-SimpleSoapy/Makefile @@ -1,22 +1,22 @@ PORTNAME= SimpleSoapy DISTVERSION= 1.5.1 PORTREVISION= 6 CATEGORIES= misc hamradio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simple pythonic wrapper for SoapySDR library WWW= https://github.com/xmikos/simplesoapy LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SoapySDR>0:misc/py-SoapySDR@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-accelerate/Makefile b/misc/py-accelerate/Makefile index a6027549c6af..4edcbef5570b 100644 --- a/misc/py-accelerate/Makefile +++ b/misc/py-accelerate/Makefile @@ -1,43 +1,43 @@ PORTNAME= accelerate DISTVERSION= 1.12.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: simple way to launch, train, use PyTorch models on any device WWW= https://huggingface.co/docs/accelerate/index \ https://github.com/huggingface/accelerate LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.21.0:misc/py-huggingface-hub@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=2.0.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>=0.4.3:misc/py-safetensors@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bitsandbytes>=0:misc/py-bitsandbytes@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}datasets>=0:misc/py-datasets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}diffusers>=0:misc/py-diffusers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}evaluate>=0:misc/py-evaluate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}timm>=0:misc/py-timm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchdata>=0.8.0:misc/py-torchdata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>=0:misc/py-transformers@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests fail because they depend on the module 'transformers' that depends on 'accelerate' and isn't yet ported NO_ARCH= yes .include diff --git a/misc/py-apache-beam/Makefile b/misc/py-apache-beam/Makefile index cd51c929faec..6f6abfe925e7 100644 --- a/misc/py-apache-beam/Makefile +++ b/misc/py-apache-beam/Makefile @@ -1,61 +1,61 @@ PORTNAME= apache-beam DISTVERSION= 2.43.0 PORTREVISION= 4 CATEGORIES= misc MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Apache Beam SDK for Python WWW= https://beam.apache.org/ LICENSE= APACHE20 PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cloudpickle>=2.2.0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}crcmod>=1.7:devel/py-crcmod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.0:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>=0.3.1.1:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fastavro>=0.23.6:textproc/py-fastavro@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fasteners>=0.3:devel/py-fasteners@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}grpcio>=1.33.1>0:devel/py-grpcio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hdfs>=2.1.0:www/py-hdfs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httplib2>=0.8:www/py-httplib2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orjson<4.0:devel/py-orjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}objsize>=0.5.2:devel/py-objsize@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}proto-plus>=1.7.1:devel/py-proto-plus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=3.12.2:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydot>=1.2.0:graphics/py-pydot@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymongo>=3.8.0:databases/py-pymongo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2018.3:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}regex>=2020.6.8:textproc/py-regex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.24.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=3.7.0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}zstandard>=0.18.0:archivers/py-zstandard@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}freezegun>=0.3.12:devel/py-freezegun@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=0.3.12:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>=1.0.1:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parameterized>=0.7.1:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psycopg2>=2.8.5:databases/py-psycopg2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyHamcrest>=1.9:textproc/py-pyhamcrest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-timeout>=1.3.3:devel/py-pytest-timeout@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>=1.29.0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-mock>=1.7:www/py-requests-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tenacity>=5.0.2:devel/py-tenacity@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.20.0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy14>=1.3:databases/py-sqlalchemy14@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=3.12:devel/py-pyyaml@${PY_FLAVOR} # testcontainers[mysql]>=3.0.3 is also required USES= python zip USE_PYTHON= autoplist concurrent cryptography_test cython0 distutils pytest # 5 tests fail, depending on pyarrow, MySqlContainer, threadpoolctl post-install: # strip binaries @${FIND} ${STAGEDIR}${PREFIX} -name "*${PYTHON_TAG}.so" | ${XARGS} ${STRIP_CMD} .include diff --git a/misc/py-bitsandbytes/Makefile b/misc/py-bitsandbytes/Makefile index 1f2093c780c1..05537e51f7aa 100644 --- a/misc/py-bitsandbytes/Makefile +++ b/misc/py-bitsandbytes/Makefile @@ -1,36 +1,36 @@ PORTNAME= bitsandbytes DISTVERSION= 0.47.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= k-bit optimizers and matrix multiplication routines WWW= https://huggingface.co/docs/bitsandbytes/main/en/index \ https://github.com/bitsandbytes-foundation/bitsandbytes LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}einops>=0.8.0:misc/py-einops@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lion-pytorch>=0.2.3:misc/py-lion-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.11.4:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>=4.30.1<5:misc/py-transformers@${PY_FLAVOR} USES= cmake:indirect python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= bitsandbytes-foundation TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/bitsandbytes/libbitsandbytes_cpu.so .include diff --git a/misc/py-boost-histogram/Makefile b/misc/py-boost-histogram/Makefile index a9f8e50f557b..84bbf3c4381a 100644 --- a/misc/py-boost-histogram/Makefile +++ b/misc/py-boost-histogram/Makefile @@ -1,35 +1,35 @@ PORTNAME= boost-histogram DISTVERSION= 1.5.0 PORTREVISION= 1 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python bindings for the C++14 Boost::Histogram library WWW= https://github.com/scikit-hep/boost-histogram LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${LOCALBASE}/include/boost/config.hpp:devel/boost-libs \ cmake:devel/cmake-core \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.13.3:devel/py-pybind11@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>=6.0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/boost_histogram/_core.cpython-${PYTHON_SUFFIX}.so .include diff --git a/misc/py-cmap/Makefile b/misc/py-cmap/Makefile index 284afe22327d..5b90ee51046a 100644 --- a/misc/py-cmap/Makefile +++ b/misc/py-cmap/Makefile @@ -1,45 +1,45 @@ PORTNAME= cmap DISTVERSION= 0.6.2 PORTREVISION= 1 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Scientific colormaps for python, without dependencies WWW= https://cmap-docs.readthedocs.io/en/stable/ LICENSE= BSD2CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bokeh>0:www/py-bokeh@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colorspacious>0:devel/py-colorspacious@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colour>0:graphics/py-colour@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>0:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic-extra-types>=2:devel/py-pydantic-extra-types@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyqtgraph>0:graphics/py-pyqtgraph@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-qt>0:devel/py-pytest-qt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}QtPy>0:devel/py-QtPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}vispy>=0.14:graphics/py-vispy@${PY_FLAVOR} # TEST_DEPENDS also needs napari, pygfx, viscm USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ DISPLAY=${DISPLAY} \ XAUTHORITY=${XAUTHORITY} # tests as of 0.5.0: 217 passed, 3 skipped in 109.38s (0:01:49) # tests as of 0.6.2: 3 failed, 214 passed, 3 skipped in 54.50s (3 failures due to deprecation warnings in the Pillow module) .include diff --git a/misc/py-codecarbon/Makefile b/misc/py-codecarbon/Makefile index 45172db110f4..88565661cf28 100644 --- a/misc/py-codecarbon/Makefile +++ b/misc/py-codecarbon/Makefile @@ -1,37 +1,37 @@ PORTNAME= codecarbon DISTVERSION= 3.0.4 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Track Compute emissions, recommend ways to reduce environmental impact WWW= https://mlco2.github.io/codecarbon/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}arrow>0:devel/py-arrow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}prometheus-client>0:net-mgmt/py-prometheus-client@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}py-cpuinfo>0:sysutils/py-py-cpuinfo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pynvml>0:devel/py-pynvml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rapidfuzz>0:devel/py-rapidfuzz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}questionary>0:devel/py-questionary@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typer>0:devel/py-typer@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-mock>0:www/py-requests-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}responses>0:devel/py-responses@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # some test dependencies are missing NO_ARCH= yes .include diff --git a/misc/py-datasets/Makefile b/misc/py-datasets/Makefile index 72ab1df7199b..774f71a63205 100644 --- a/misc/py-datasets/Makefile +++ b/misc/py-datasets/Makefile @@ -1,70 +1,70 @@ PORTNAME= datasets DISTVERSION= 4.8.2 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= HuggingFace community-driven open-source library of datasets WWW= https://huggingface.co/docs/datasets/index LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyproject-hooks>0:devel/py-pyproject-hooks@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0.3.0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>=2023.1.0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httpx>0:www/py-httpx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.25.0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}multiprocess>0:devel/py-multiprocess@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyarrow>=21.0.0:databases/py-pyarrow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.1:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.32.2:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.66.3:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xxhash>0:devel/py-xxhash@${PY_FLAVOR} RUN_DEPENDS_AUDIO= \ ${PYTHON_PKGNAMEPREFIX}torchcodec>=0.6.0:multimedia/py-torchcodec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=2.8.0:misc/py-pytorch@${PY_FLAVOR} RUN_DEPENDS_VISION= \ ${PY_PILLOW} RUN_DEPENDS+= ${RUN_DEPENDS_AUDIO} \ ${RUN_DEPENDS_VISION} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}absl-py>=0:devel/py-absl-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}elasticsearch>0:textproc/py-elasticsearch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}faiss>=1.6.4:math/py-faiss@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jax>=0.3.14:math/py-jax@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jiwer>0:misc/py-jiwer@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=1.3.0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lz4>=0:archivers/py-lz4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}polars>=0.20.0:misc/py-polars@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=4.0.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-datadir>=0:devel/py-pytest-datadir@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>=0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=2.0.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rarfile>=4.0:archivers/py-rarfile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}s3fs>=2021.11.1:filesystems/py-s3fs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tiktoken>=0:textproc/py-tiktoken@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.6.1:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}zstandard>=0:archivers/py-zstandard@${PY_FLAVOR} # missing TEST_DEPENDS: jaxlib, joblibspark, py7zr, pyspark, tensorflow USES= python USE_PYTHON= pep517 concurrent autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes pre-test: # prevent failure due to missing pyspark @${RM} ${WRKSRC}/tests/packaged_modules/test_spark.py .include diff --git a/misc/py-detecta/Makefile b/misc/py-detecta/Makefile index c5878fc06bc4..cb8c343e01b3 100644 --- a/misc/py-detecta/Makefile +++ b/misc/py-detecta/Makefile @@ -1,24 +1,24 @@ PORTNAME= detecta DISTVERSION= 0.0.5 PORTREVISION= 4 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library to detect events in data WWW= https://github.com/demotu/detecta LICENSE= APACHE20 PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-diffusers/Makefile b/misc/py-diffusers/Makefile index 49060c9a5399..2de2a5470b05 100644 --- a/misc/py-diffusers/Makefile +++ b/misc/py-diffusers/Makefile @@ -1,33 +1,33 @@ PORTNAME= diffusers DISTVERSION= 0.37.0 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= State-of-the-art diffusion in PyTorch WWW= https://huggingface.co/docs/diffusers/index \ https://github.com/huggingface/diffusers LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httpx>0:www/py-httpx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.34.0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>0:devel/py-importlib-metadata@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}regex>0:textproc/py-regex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>0:misc/py-safetensors@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist NO_ARCH= yes .include diff --git a/misc/py-evaluate/Makefile b/misc/py-evaluate/Makefile index b5285f0d113e..6da9ffc8323e 100644 --- a/misc/py-evaluate/Makefile +++ b/misc/py-evaluate/Makefile @@ -1,44 +1,44 @@ PORTNAME= evaluate DISTVERSIONPREFIX= v DISTVERSION= 0.4.6 PORTREVISION= 1 CATEGORIES= misc python # machine-learning #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= HuggingFace community-driven open-source library of evaluation WWW= https://github.com/huggingface/evaluate \ https://huggingface.co/docs/evaluate/index LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}datasets>=2.0.0:misc/py-datasets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>=2021.05.0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.7.0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>0:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}multiprocess>0:devel/py-multiprocess@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.19.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.62.1:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xxhash>0:devel/py-xxhash@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}transformers>0:misc/py-transformers@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= huggingface TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ USE_TF=NO USE_TORCH=YES MPLBACKEND=Agg HF_ALLOW_CODE_EVAL=1 NO_ARCH= yes .include diff --git a/misc/py-ezc3d/Makefile b/misc/py-ezc3d/Makefile index d1e9da15969d..f9b1a69f8000 100644 --- a/misc/py-ezc3d/Makefile +++ b/misc/py-ezc3d/Makefile @@ -1,57 +1,57 @@ PORTNAME= ezc3d DISTVERSIONPREFIX= Release_ DISTVERSION= 1.6.3 PORTREVISION= 1 CATEGORIES= misc python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= C3D (biomechanics data format) reader/writer WWW= https://github.com/pyomeca/ezc3d LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ cmake:devel/cmake-core \ swig:devel/swig -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # autoplist is broken due to https://github.com/pyomeca/ezc3d/issues/258 ; 3 tests fail, see https://github.com/pyomeca/ezc3d/issues/291 USE_GITHUB= yes GH_ACCOUNT= pyomeca GH_TUPLE= google:googletest:3880b13:googletest/external/gtest # https://github.com/pyomeca/ezc3d/issues/256 TEST_ARGS= ${WRKSRC}/test/python3 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: # strip binaries @cd ${STAGEDIR}/${PYTHON_SITELIBDIR} && \ ${STRIP_CMD} \ ezc3d/_ezc3d.so \ ezc3d/libezc3d.so pre-test: # download test c3d files # download archives @${MKDIR} ${WRKSRC}/test/c3dFiles @cd ${WRKDIR} && ${FETCH_CMD} -q https://github.com/pyomeca/ezc3d-testFiles/archive/master.zip -o ${WRKSRC}/test/c3dFiles/ezc3d-testFiles-master.zip .for f in Sample01.zip Sample02.zip @cd ${WRKDIR} && ${FETCH_CMD} -q https://www.c3d.org/data/${f} -o ${WRKSRC}/test/c3dFiles/${f} .endfor # extract archives .for n in ezc3d-testFiles-master Sample01 Sample02 @cd ${WRKSRC}/test/c3dFiles && ${MKDIR} ${n} && cd ${n} && ${TAR} -xf ../${n}.zip .endfor # move *.c3d files into a flat folder @${MKDIR} ${WRKSRC}/test/c3dTestFiles @${CP} `${FIND} ${WRKSRC} -name "*.c3d"` ${WRKSRC}/test/c3dTestFiles # tests as of : 2 failed, 25 passed, 1 error in 4.17s, see https://github.com/pyomeca/ezc3d/issues/368 .include diff --git a/misc/py-facenet-pytorch/Makefile b/misc/py-facenet-pytorch/Makefile index 443e29f8c9e6..c246d5c5bd3e 100644 --- a/misc/py-facenet-pytorch/Makefile +++ b/misc/py-facenet-pytorch/Makefile @@ -1,25 +1,25 @@ PORTNAME= facenet-pytorch DISTVERSION= 2.5.3 PORTREVISION= 3 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pretrained PyTorch face detection and recognition models WWW= https://github.com/timesler/facenet-pytorch LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-fast-histogram/Makefile b/misc/py-fast-histogram/Makefile index c637c977d944..d38521cc5c34 100644 --- a/misc/py-fast-histogram/Makefile +++ b/misc/py-fast-histogram/Makefile @@ -1,26 +1,26 @@ PORTNAME= fast-histogram DISTVERSION= 0.14 PORTREVISION= 2 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast simple 1D and 2D histograms WWW= https://github.com/astrofrog/fast-histogram LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/fast_histogram/_histogram_core*.so .include diff --git a/misc/py-fastscapelib/Makefile b/misc/py-fastscapelib/Makefile index c653e4b5424f..bd0e436added 100644 --- a/misc/py-fastscapelib/Makefile +++ b/misc/py-fastscapelib/Makefile @@ -1,37 +1,37 @@ PORTNAME= fastscapelib DISTVERSIONPREFIX= v DISTVERSION= 0.3.0 PORTREVISION= 1 CATEGORIES= misc PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library of efficient algorithms for topographic data WWW= https://fastscapelib.readthedocs.io/en/latest/ \ https://github.com/fastscape-lem/fastscapelib LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= cmake:devel/cmake-core \ xtensor>0:math/xtensor \ xtensor-python>0:math/xtensor-python \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} LIB_DEPENDS= libhealpix_cxx.so:science/healpix -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= fastscape-lem TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 0.3.0: 174 passed in 131.81s (0:02:11) .include diff --git a/misc/py-gguf/Makefile b/misc/py-gguf/Makefile index 68f74683b7b9..a4838cac908e 100644 --- a/misc/py-gguf/Makefile +++ b/misc/py-gguf/Makefile @@ -1,43 +1,43 @@ PORTNAME= gguf DISTVERSION= 0.17.1.${GH_TAGNAME:S/b//} # the base version is in pyproject.toml, updated by post-patch PORTREVISION= 1 CATEGORIES= misc python # machine-learning #MASTER_SITES= PYPI # the PYPI version is way behind of llama-cpp PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Read and write ML models in GGUF for GGML WWW= https://ggml.ai \ https://github.com/ggml-org/llama.cpp LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}poetry-core>=1.0.0:devel/py-poetry-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.1:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sentencepiece>=0.1.98:textproc/py-sentencepiece@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.27:misc/py-tqdm@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= ggml-org GH_PROJECT= llama.cpp GH_TAGNAME= b7134 WRKSRC= ${WRKDIR}/${GH_PROJECT}-${GH_TAGNAME}/gguf-py SHEBANG_GLOB= *.py NO_ARCH= yes post-patch: # update version to reflect llama-cpp revision, have to use '.' since '-' is interpreted as "post" @${REINPLACE_CMD} \ -e 's/version = "${DISTVERSION:R}"/version = "${DISTVERSION:R}.${GH_TAGNAME:S/b//}"/' \ ${WRKSRC}/pyproject.toml # tests as of 0.17.1.5895: 5 passed in 2.08s .include diff --git a/misc/py-gymnasium/Makefile b/misc/py-gymnasium/Makefile index 2460270dd367..a4324e195a93 100644 --- a/misc/py-gymnasium/Makefile +++ b/misc/py-gymnasium/Makefile @@ -1,34 +1,34 @@ PORTNAME= gymnasium DISTVERSION= 1.2.2 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI # no tarball PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= API for reinforcement learning & diverse set of reference environments WWW= https://gymnasium.farama.org/ \ https://github.com/Farama-Foundation/Gymnasium LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cloudpickle>=1.2.0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Farama-Notifications>=0.0.1:devel/py-Farama-Notifications@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.3.0:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dill>=0.3.7:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.3:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes # tests as of 1.2.0: 9 passed in 2.09s .include diff --git a/misc/py-hist/Makefile b/misc/py-hist/Makefile index 8fe84fe88b9b..ed2a8254a3f4 100644 --- a/misc/py-hist/Makefile +++ b/misc/py-hist/Makefile @@ -1,40 +1,40 @@ PORTNAME= hist DISTVERSIONPREFIX= v DISTVERSION= 2.9.2 PORTREVISION= 1 CATEGORIES= misc python #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Histogramming for analysis powered by boost-histogram WWW= https://hist.readthedocs.io/en/latest/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}boost-histogram>=1.5:misc/py-boost-histogram@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}histoprint>=2.2.0:misc/py-histoprint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dask>=2022:devel/py-dask@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dask-histogram>=2023.1:devel/py-dask-histogram@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mplhep>0:science/py-mplhep@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mpl>=0.12:devel/py-pytest-mpl@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # 21 tests fail: _tkinter.TclError: no display name and no $DISPLAY environment variable USE_GITHUB= yes GH_ACCOUNT= scikit-hep NO_ARCH= yes MAKE_ENV= SETUPTOOLS_SCM_PRETEND_VERSION=${DISTVERSION} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} BINARY_ALIAS= git=false .include diff --git a/misc/py-histoprint/Makefile b/misc/py-histoprint/Makefile index 0e4b0365efc9..60c3d0707e04 100644 --- a/misc/py-histoprint/Makefile +++ b/misc/py-histoprint/Makefile @@ -1,28 +1,28 @@ PORTNAME= histoprint DISTVERSION= 2.5.0 PORTREVISION= 2 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pretty printing of histograms to the console WWW= https://github.com/scikit-hep/histoprint LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>=7.0.0:devel/py-click@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uhi>=0.2.1:misc/py-uhi@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/misc/py-ipyfastscape/Makefile b/misc/py-ipyfastscape/Makefile index 4758d5153543..686dbba808a3 100644 --- a/misc/py-ipyfastscape/Makefile +++ b/misc/py-ipyfastscape/Makefile @@ -1,33 +1,33 @@ PORTNAME= ipyfastscape DISTVERSION= 0.2.1 PORTREVISION= 2 CATEGORIES= misc PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Interactive widgets for topographic data analysis and modelling WWW= https://github.com/fastscape-lem/ipyfastscape LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipygany>=0.5.0:science/py-ipygany@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>=0:devel/ipython@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xarray>0:devel/py-xarray@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= fastscape-lem MAKE_ENV= SETUPTOOLS_SCM_PRETEND_VERSION=${DISTVERSION} # workaround for LookupError: setuptools-scm was unable to detect version for ... NO_ARCH= yes .include diff --git a/misc/py-kokoro/Makefile b/misc/py-kokoro/Makefile index 30a41aa97820..ed3c10c00362 100644 --- a/misc/py-kokoro/Makefile +++ b/misc/py-kokoro/Makefile @@ -1,52 +1,52 @@ PORTNAME= kokoro DISTVERSION= 0.9.4 PORTREVISION= 2 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Text-to-speech inference library for Kokoro-82M model WWW= https://github.com/hexgrad/kokoro \ https://huggingface.co/hexgrad/Kokoro-82M LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}huggingface-hub>0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}loguru>0:devel/py-loguru@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}misaki>=0.9.4:misc/py-misaki@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}num2words>0:devel/py-num2words@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spacy>0:textproc/py-spacy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>=0:misc/py-transformers@${PY_FLAVOR} # extra run dependencies for kokoro-text-to-audio and kokoro-text-to-wav RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SoundFile>0:audio/py-SoundFile@${PY_FLAVOR} \ mpv:multimedia/mpv USES= python USE_PYTHON= pep517 concurrent autoplist NO_ARCH= yes PLIST_FILES= bin/kokoro-text-to-audio \ bin/kokoro-text-to-wav TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: ${INSTALL_SCRIPT} ${FILESDIR}/kokoro-text-to-audio.py ${STAGEDIR}${PREFIX}/bin/kokoro-text-to-audio ${INSTALL_SCRIPT} ${FILESDIR}/kokoro-text-to-wav.py ${STAGEDIR}${PREFIX}/bin/kokoro-text-to-wav @${REINPLACE_CMD} -i '' 's|%%PYTHON%%|${PYTHON_CMD}|' \ ${STAGEDIR}${PREFIX}/bin/kokoro-text-to-audio \ ${STAGEDIR}${PREFIX}/bin/kokoro-text-to-wav do-test: @cd ${WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/example.py && \ mpv 0.wav .include diff --git a/misc/py-langchain-core/Makefile b/misc/py-langchain-core/Makefile index 17d73adff545..0c616b0edb0d 100644 --- a/misc/py-langchain-core/Makefile +++ b/misc/py-langchain-core/Makefile @@ -1,46 +1,46 @@ PORTNAME= langchain-core DISTVERSION= 1.2.19 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= LangChain: Building applications with LLMs through composability WWW= https://python.langchain.com/docs/introduction/ \ https://github.com/langchain-ai/langchain LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jsonpatch>=1.33:devel/py-jsonpatch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langsmith>=0.3.45:misc/py-langsmith@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=23.2:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.7.4:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tenacity>=8.4.0<10.0.0>=8.1.0:devel/py-tenacity@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.7:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uuid-utils>=0.12.0:misc/py-uuid-utils@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}blockbuster>=1.5.18:devel/py-blockbuster@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}freezegun>=1.2.2:devel/py-freezegun@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}grandalf>=0.8:math/py-grandalf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langchain-tests>0:misc/py-langchain-tests@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>=0.21.1:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-codspeed>0:devel/py-pytest-codspeed@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>=3.10.0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-socket>=0.7.0:devel/py-pytest-socket@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-watcher>0:devel/py-pytest-watcher@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>=3.6.1:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}responses>=0.25.0:devel/py-responses@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}syrupy>=4.0.2:devel/py-syrupy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests fail with: INTERNALERROR> ValueError: no option named 'only_extended' .include diff --git a/misc/py-langchain-google-genai/Makefile b/misc/py-langchain-google-genai/Makefile index de2ed7b125a1..5fe927248f4d 100644 --- a/misc/py-langchain-google-genai/Makefile +++ b/misc/py-langchain-google-genai/Makefile @@ -1,33 +1,33 @@ PORTNAME= langchain-google-genai DISTVERSION= 4.2.1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/g}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Integration package connecting Google's genai package and LangChain WWW= https://github.com/langchain-ai/langchain-google LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}filetype>=1.2.0:devel/py-filetype@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}google-genai>=1.56.0:misc/py-google-genai@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langchain-core>=1.2.5:misc/py-langchain-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2:devel/py-pydantic2@${PY_FLAVOR} #TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}freezegun>=1.2.2:devel/py-freezegun@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langchain-tests>=0.3.20:misc/py-langchain-tests@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>=0.21.1:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>=3.10.0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-watcher>0:devel/py-pytest-watcher@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}syrupy>=4.0.2:devel/py-syrupy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-langchain-tests/Makefile b/misc/py-langchain-tests/Makefile index afe29f5089d7..5c4f97c12feb 100644 --- a/misc/py-langchain-tests/Makefile +++ b/misc/py-langchain-tests/Makefile @@ -1,36 +1,36 @@ PORTNAME= langchain-tests DISTVERSION= 1.1.5 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= LangChain: Standard tests for LangChain implementations WWW= https://github.com/langchain-ai/langchain/tree/master/libs/standard-tests LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}httpx>=0.28.1:www/py-httpx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}langchain-core>=1.1.2:misc/py-langchain-core@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=7:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>=0.20:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-codspeed>0:devel/py-pytest-codspeed@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-recording>0:devel/py-pytest-recording@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-socket>=0.7.0:devel/py-pytest-socket@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}syrupy>=4:devel/py-syrupy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}vcrpy>=7.0:devel/py-vcrpy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests as of 0.3.20: 127 passed, 27 skipped, 1 warning in 6.57s .include diff --git a/misc/py-langgraph-checkpoint/Makefile b/misc/py-langgraph-checkpoint/Makefile index 09997941999d..7d954694ed23 100644 --- a/misc/py-langgraph-checkpoint/Makefile +++ b/misc/py-langgraph-checkpoint/Makefile @@ -1,34 +1,34 @@ PORTNAME= langgraph-checkpoint DISTVERSION= 4.0.1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= LangGraph: Base interfaces for LangGraph checkpoint savers WWW= https://github.com/langchain-ai/langgraph LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}langchain-core>=0.2.38:misc/py-langchain-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ormsgpack>=1.12.0:devel/py-ormsgpack@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dataclasses-json>0:devel/py-dataclasses-json@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas-stubs>=2.2.2.240807:math/py-pandas-stubs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>0:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-watcher>0:devel/py-pytest-watcher@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}redis>0:databases/py-redis@${PY_FLAVOR} # math/py-pandas-stubs isn't ported yet USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-laspy/Makefile b/misc/py-laspy/Makefile index 004731c3f81d..131b2792a9fe 100644 --- a/misc/py-laspy/Makefile +++ b/misc/py-laspy/Makefile @@ -1,33 +1,33 @@ PORTNAME= laspy DISTVERSION= 2.5.4 PORTREVISION= 1 CATEGORIES= misc MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library and tools to read/write LAS files with lidar data WWW= https://laspy.readthedocs.io/en/latest/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} # optional dependencies RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}lazrs>=0.6.0:misc/py-lazrs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}laszip>=0.2.1:archivers/py-laszip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproj>0:graphics/py-pyproj@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>=10.11.0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typer>=0.8.0:devel/py-typer@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist pytest # tests can't find the module laspy.cli.core, see https://github.com/laspy/laspy/issues/297 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/misc/py-lightgbm/Makefile b/misc/py-lightgbm/Makefile index 2b1027475cc1..c863a8e18e20 100644 --- a/misc/py-lightgbm/Makefile +++ b/misc/py-lightgbm/Makefile @@ -1,38 +1,38 @@ PORTNAME= lightgbm DISTVERSION= 4.6.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Gradient boosting framework that uses tree based learning algorithms WWW= https://lightgbm.readthedocs.io/en/latest/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE NOT_FOR_ARCHS= armv6 armv7 i386 # Exception: Cannot install LightGBM in 32-bit Python, please use 64-bit Python instead -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.22.0:science/py-scikit-learn@${PY_FLAVOR} BUILD_DEPENDS= cmake:devel/cmake-core \ gmake:devel/gmake \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} USES= eigen:3 python USE_PYTHON= pep517 autoplist CXXFLAGS+= -I${LOCALBASE}/include/eigen3 BINARY_ALIAS= make=${GMAKE} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/lightgbm/lib/lib_lightgbm.so .include diff --git a/misc/py-llama-cpp-python/Makefile b/misc/py-llama-cpp-python/Makefile index cc0e201d3bd1..23c50dd516d5 100644 --- a/misc/py-llama-cpp-python/Makefile +++ b/misc/py-llama-cpp-python/Makefile @@ -1,42 +1,42 @@ PORTNAME= llama-cpp-python DISTVERSIONPREFIX= v DISTVERSION= 0.3.16 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python bindings for the llama.cpp library WWW= https://llama-cpp-python.readthedocs.io/en/latest/ \ https://github.com/abetlen/llama-cpp-python LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build-core>=0.9.2:devel/py-scikit-build-core@${PY_FLAVOR} \ cmake:devel/cmake-core LIB_DEPENDS= libvulkan.so:graphics/vulkan-loader RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}diskcache>=5.6.1:devel/py-diskcache@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=2.11.3:devel/py-Jinja2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.5.0:devel/py-typing-extensions@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fastapi>=0.100.0:www/py-fastapi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic-settings>=2.0.1:devel/py-pydantic-settings@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sse-starlette>=1.6.1:www/py-sse-starlette@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}starlette-context>=0.3.6:www/py-starlette-context@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uvicorn>=0.22.0:www/py-uvicorn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.1:devel/py-pyyaml@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}httpx>=0.24.1:www/py-httpx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.23.0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10:science/py-scipy@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= abetlen GH_TUPLE= ggerganov:llama.cpp:b6598:cpp/vendor/llama.cpp SHEBANG_GLOB= *.py .include diff --git a/misc/py-mffpy/Makefile b/misc/py-mffpy/Makefile index 69c39d24ddd4..1fc2664388b5 100644 --- a/misc/py-mffpy/Makefile +++ b/misc/py-mffpy/Makefile @@ -1,29 +1,29 @@ PORTNAME= mffpy DISTVERSIONPREFIX= v DISTVERSION= 0.10.0 PORTREVISION= 4 CATEGORIES= misc #MASTER_SITES= PYPI # no test files PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Reader and writer for Philips' MFF file format WWW= https://github.com/BEL-Public/mffpy/ LICENSE= APACHE20 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deprecated>=1.2.12:devel/py-deprecated@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>=4.8.0:devel/py-lxml@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2019.2:devel/py-pytz@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist pytest # 14 tests fail with AttributeError: module 'numpy' has no attribute 'float', see https://github.com/BEL-Public/mffpy/issues/126 USE_GITHUB= yes GH_ACCOUNT= BEL-Public NO_ARCH= yes .include diff --git a/misc/py-mmcv/Makefile b/misc/py-mmcv/Makefile index 759369d86e7c..12082096079e 100644 --- a/misc/py-mmcv/Makefile +++ b/misc/py-mmcv/Makefile @@ -1,34 +1,34 @@ PORTNAME= mmcv #DISTVERSIONPREFIX= v DISTVERSION= 2.2.0 PORTREVISION= 4 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= OpenMMLab: Foundational library for computer vision research WWW= https://mmcv.readthedocs.io/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ninja:devel/ninja \ ${PREFIX}/include/pybind11/pybind11.h:devel/pybind11 \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}addict>0:devel/py-addict@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mmengine>=0.3.0:misc/py-mmengine@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}yapf>0:textproc/py-yapf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR} USES= compiler:c++17-lang localbase python USE_PYTHON= distutils cython autoplist # pytest: many test dependencies are missing post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/mmcv/_ext${PYTHON_TAG}.so .include diff --git a/misc/py-mmdet/Makefile b/misc/py-mmdet/Makefile index 8c778c704167..da3a0511512e 100644 --- a/misc/py-mmdet/Makefile +++ b/misc/py-mmdet/Makefile @@ -1,33 +1,33 @@ PORTNAME= mmdet #DISTVERSIONPREFIX= v DISTVERSION= 3.3.0 PORTREVISION= 3 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= OpenMMLab: Detection Toolbox and Benchmark WWW= https://mmdetection.readthedocs.io/en/latest/ LICENSE= APACHE20 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycocotools>0:devel/py-pycocotools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}shapely>0:devel/py-shapely@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}terminaltables>0:textproc/py-terminaltables@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist # pytest: many test dependencies are missing #USE_GITHUB= yes #GH_ACCOUNT= open-mmlab NO_ARCH= yes .include diff --git a/misc/py-mmengine/Makefile b/misc/py-mmengine/Makefile index 814e28518a6f..bbeb6080557d 100644 --- a/misc/py-mmengine/Makefile +++ b/misc/py-mmengine/Makefile @@ -1,32 +1,32 @@ PORTNAME= mmengine DISTVERSIONPREFIX= v DISTVERSION= 0.10.5 PORTREVISION= 3 CATEGORIES= misc # machine-learning #MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Engine of OpenMMLab projects: training PyTorch deep learning models WWW= https://mmengine.readthedocs.io/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}addict>0:devel/py-addict@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}termcolor>0:devel/py-termcolor@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yapf>0:textproc/py-yapf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist # pytest: many test dependencies are missing USE_GITHUB= yes GH_ACCOUNT= open-mmlab NO_ARCH= yes .include diff --git a/misc/py-mmsegmentation/Makefile b/misc/py-mmsegmentation/Makefile index c38aabd1ef3e..4bd488798403 100644 --- a/misc/py-mmsegmentation/Makefile +++ b/misc/py-mmsegmentation/Makefile @@ -1,27 +1,27 @@ PORTNAME= mmsegmentation #DISTVERSIONPREFIX= v DISTVERSION= 1.2.2 PORTREVISION= 3 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= OpenMMLab: Semantic Segmentation Toolbox and Benchmark WWW= https://mmsegmentation.readthedocs.io/en/latest/ LICENSE= APACHE20 #BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}prettytable>=0:devel/py-prettytable@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist # pytest: many test dependencies are missing NO_ARCH= yes .include diff --git a/misc/py-napari/Makefile b/misc/py-napari/Makefile index 9b10db08f863..04b51f99f334 100644 --- a/misc/py-napari/Makefile +++ b/misc/py-napari/Makefile @@ -1,59 +1,59 @@ PORTNAME= napari DISTVERSION= 0.6.6 PORTREVISION= 2 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= n-dimensional array viewer in Python WWW= https://napari.org/stable/ \ https://github.com/napari/napari LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pillow>=9.0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyOpenGL>=3.1.5:graphics/py-PyOpenGL@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}app-model>=0.4.0:devel/py-app-model@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}appdirs>=1.4.4:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cachey>=0.2.1:devel/py-cachey@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}certifi>=2018.1.18:security/py-certifi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dask>=2021.10.0:devel/py-dask@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>=2.20:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonschema>=3.2.0:devel/py-jsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.3:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}magicgui>=0.7.0:x11-toolkits/py-magicgui@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari-console>=0.1.4:graphics/py-napari-console@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari-plugin-engine>=0.1.9:graphics/py-napari-plugin-engine@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari-svg>=0.1.8:misc/py-napari-svg@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}npe2>=0.7.9:misc/py-npe2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpydoc>=1.0.0:textproc/py-numpydoc@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.3.3:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>=0.17:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.9.0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psygnal>=0.14.2:devel/py-psygnal@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.2.0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=2.6.0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}QtPy>=2.3.1:devel/py-QtPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.19.1:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}superqt>=0.7.4:x11-toolkits/py-superqt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tifffile>=2022.7.28:graphics/py-tifffile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}toolz>=0.11.0:devel/py-toolz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.56.0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.12:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}vispy>=0.15.2:graphics/py-vispy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wrapt>=1.13.3:devel/py-wrapt@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist concurrent NO_ARCH= yes .include diff --git a/misc/py-npTDMS/Makefile b/misc/py-npTDMS/Makefile index 7dc69bd05f8a..864faa459aba 100644 --- a/misc/py-npTDMS/Makefile +++ b/misc/py-npTDMS/Makefile @@ -1,30 +1,30 @@ PORTNAME= npTDMS DISTVERSION= 1.9.0 PORTREVISION= 1 CATEGORIES= misc MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= NumPy based module for reading TDMS files produced by LabView WWW= https://github.com/adamreeve/npTDMS LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} # optional TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}thermocouples_reference>0:misc/py-thermocouples_reference@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # 4 tests fail, see https://github.com/adamreeve/npTDMS/issues/329 NO_ARCH= yes .include diff --git a/misc/py-npe2/Makefile b/misc/py-npe2/Makefile index b5e7b5cc6e8e..c598fec888b6 100644 --- a/misc/py-npe2/Makefile +++ b/misc/py-npe2/Makefile @@ -1,47 +1,47 @@ PORTNAME= npe2 DISTVERSION= 0.7.9 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Napari plugin engine v2 WWW= https://napari.org/stable/plugins/ \ https://github.com/napari/npe2 LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}build>=1:devel/py-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}platformdirs>0:devel/py-platformdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psygnal>=0.3.0:devel/py-psygnal@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.1:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tomli-w>0:textproc/py-tomli-w@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typer>=0:devel/py-typer@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}magicgui>0:x11-toolkits/py-magicgui@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari-plugin-engine>0:graphics/py-napari-plugin-engine@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}napari-svg>=0.1.5:misc/py-napari-svg@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-pretty>=0:devel/py-pytest-pretty@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes # tests as of 0.7.9, see https://github.com/napari/npe2/issues/409: # Results (2.71s): # 3 failed # 246 passed # 9 skipped # 6 warnings .include diff --git a/misc/py-numcodecs/Makefile b/misc/py-numcodecs/Makefile index e70bb4e36a5b..a897e7137ddb 100644 --- a/misc/py-numcodecs/Makefile +++ b/misc/py-numcodecs/Makefile @@ -1,45 +1,45 @@ PORTNAME= numcodecs DISTVERSION= 0.13.0 PORTREVISION= 2 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package providing buffer compression and transformation codecs for use WWW= https://numcodecs.readthedocs.io/en/stable/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}py-cpuinfo>0:sysutils/py-py-cpuinfo@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}zfp>0:devel/py-zfp@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist pytest # tests fail to find the library in the staged directory for some reason CXXFLAGS_i386= -msse2 # otherwise it fails to compile: #error SSE2 is not supported by the target architecture/platform and/or this compiler. TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/numcodecs/tests OPTIONS_DEFINE= AVX2 AVX2_DESC= Use AVX2 SIMD instructions AVX2_CONFIGURE_ENV_OFF= DISABLE_NUMCODECS_AVX2=yes AVX2_MAKE_ENV_OFF= DISABLE_NUMCODECS_AVX2=yes .include .if ${ARCH} == i386 MAKE_ENV+= DISABLE_NUMCODECS_SSE2=yes DISABLE_NUMCODECS_AVX2=yes .endif post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/numcodecs/*${PYTHON_TAG}.so .include diff --git a/misc/py-onnx/Makefile b/misc/py-onnx/Makefile index 26fa36b4317a..f69c9215a337 100644 --- a/misc/py-onnx/Makefile +++ b/misc/py-onnx/Makefile @@ -1,65 +1,65 @@ PORTNAME= onnx DISTVERSION= 1.17.0 PORTREVISION= 4 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI \ https://github.com/abseil/abseil-cpp/archive/refs/tags/:abseil \ https://github.com/protocolbuffers/protobuf/releases/download/v22.3/:protobuf # use downloaded protobuf-22.3 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX} \ 20230125.3.tar.gz:abseil \ protobuf-22.3.tar.gz:protobuf # use downloaded protobuf-22.3 DIST_SUBDIR= onnx EXTRACT_ONLY= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Open Neural Network eXchange WWW= https://onnx.ai \ https://github.com/onnx/onnx LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= bash:shells/bash \ cmake:devel/cmake-core \ protoc-gen-mypy:devel/py-mypy-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} #LIB_DEPENDS= libabsl_base.so:devel/abseil \ libprotobuf.so:devel/protobuf # disable packaged protobuf RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}google-re2>0:devel/py-google-re2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=3.20.2:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=3.6.2.1:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} USES= compiler:c++17-lang python shebangfix USE_PYTHON= pep517 concurrent autoplist pytest CXXFLAGS+= -Dstat64=stat SHEBANG_FILES= tools/protoc-gen-mypy.sh.in CONFLICTS_BUILD= protobuf # use downloaded protobuf-22.3 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/onnx/test BINARY_ALIAS= python=${PYTHON_CMD} post-patch: # replace protobuf-24+ with protobuf-lite-22.3 @${REINPLACE_CMD} \ -e ' \ s|set(ProtobufURL https://github.com/protocolbuffers/protobuf/releases/download/v22.3/|set(ProtobufURL file://${DISTDIR}/${DIST_SUBDIR}/|; \ s|set(AbseilURL https://github.com/abseil/abseil-cpp/archive/refs/tags/|set(AbseilURL file://${DISTDIR}/${DIST_SUBDIR}/| \ ' \ ${WRKSRC}/CMakeLists.txt post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/onnx/onnx_cpp2py_export*.so # tests as of 1.17.0: 4 failed, 4564 passed, 3044 skipped, 26 warnings in 60.66s (0:01:00), see https://github.com/onnx/onnx/issues/6733 .include diff --git a/misc/py-openai-whisper/Makefile b/misc/py-openai-whisper/Makefile index b1345a74efca..f494362ac723 100644 --- a/misc/py-openai-whisper/Makefile +++ b/misc/py-openai-whisper/Makefile @@ -1,34 +1,34 @@ PORTNAME= openai-whisper DISTVERSIONPREFIX= v DISTVERSION= 20240930 PORTREVISION= 2 CATEGORIES= misc python # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Robust Speech Recognition via Large-Scale Weak Supervision WWW= https://openai.com/research/whisper LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}more-itertools>0:devel/py-more-itertools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tiktoken>0:textproc/py-tiktoken@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests use 4+ GB each, several tests fail USE_GITHUB= yes GH_ACCOUNT= openai GH_PROJECT= whisper NO_ARCH= yes .include diff --git a/misc/py-openai/Makefile b/misc/py-openai/Makefile index e9bbe8010634..a47476e0370c 100644 --- a/misc/py-openai/Makefile +++ b/misc/py-openai/Makefile @@ -1,48 +1,48 @@ PORTNAME= openai DISTVERSION= 2.28.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python client library for the OpenAI API WWW= https://github.com/openai/openai-python LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}hatch-fancy-pypi-readme>=0:devel/py-hatch-fancy-pypi-readme@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}anyio>=3.5.0:devel/py-anyio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}distro>=1.7.0:sysutils/py-distro@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}httpx>=0.23.0:www/py-httpx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=1.9.0<3:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sniffio>0:devel/py-sniffio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>4:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.11:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jiter>=0.10.0:textproc/py-jiter@${PY_FLAVOR} -RUN_DEPENDS+= ${PYNUMPY} \ +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.2.3:math/py-pandas@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}azure-identity>0:devel/py-azure-identity@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dirty-equals>=0.6.0:devel/py-dirty-equals@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>=6.7.0:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mypy>0:devel/py-mypy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyright>=1.1.359:devel/py-pyright@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-asyncio>0:devel/py-pytest-asyncio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}respx>0:www/py-respx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>=13.7.1:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruff>0:devel/py-ruff@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}time-machine>=0:devel/py-time-machine@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}trio>=0.22.2:net/py-trio@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist pytest # tests fail because api_key needs to be set TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/misc/py-openvdb/Makefile b/misc/py-openvdb/Makefile index 5132f50768fc..44508b295d75 100644 --- a/misc/py-openvdb/Makefile +++ b/misc/py-openvdb/Makefile @@ -1,47 +1,47 @@ PORTNAME= openvdb DISTVERSIONPREFIX= v DISTVERSION= 13.0.0 PORTREVISION= 1 CATEGORIES= misc PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Tools for storage and manipulation of sparse volumetric data WWW= https://www.openvdb.org \ https://github.com/AcademySoftwareFoundation/openvdb LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/../../../LICENSE BUILD_DEPENDS= nanobind>0:devel/nanobind \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ libopenvdb.so:misc/openvdb \ libtbb.so:devel/onetbb -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake compiler:c++17-lang localbase:ldflags python USE_LDCONFIG= yes USE_PYTHON= flavors pytest USE_GITHUB= yes GH_ACCOUNT= AcademySoftwareFoundation CMAKE_ON= USE_NUMPY OPENVDB_PYTHON_WRAP_ALL_GRID_TYPES CMAKE_OFF= OPENVDB_BUILD_PYTHON_UNITTESTS CMAKE_ARGS= -DPython_EXECUTABLE=${PYTHON_CMD} \ -DFREEBSD_PYTHON_VER=${PYTHON_VER} WRKSRC_SUBDIR= openvdb/openvdb/python TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} PLIST_FILES= ${PYTHON_SITELIBDIR}/openvdb${PYTHON_TAG}.so do-test: # run an example, since the supplied test appears to be only for Windows @cd ${WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/example.py && \ [ -f ${WRKSRC}/mygrids.vdb ] && \ ${ECHO} "Test has succeeded." .include diff --git a/misc/py-optuna/Makefile b/misc/py-optuna/Makefile index 550c9b810fba..1184fedef286 100644 --- a/misc/py-optuna/Makefile +++ b/misc/py-optuna/Makefile @@ -1,55 +1,55 @@ PORTNAME= optuna DISTVERSION= 4.7.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Hyperparameter optimization framework WWW= https://optuna.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}alembic>=1.5.0:databases/py-alembic@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}colorlog>0:devel/py-colorlog@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy20>=1.4.2:databases/py-sqlalchemy20@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} RUN_DEPENDS_optional= \ ${PYTHON_PKGNAMEPREFIX}boto3>0:www/py-boto3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cmaes>=0.10.0:math/py-cmaes@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}google-cloud-storage>0:www/py-google-cloud-storage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}grpcio>0:devel/py-grpcio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.6.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.9.0:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=5.28.1:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}redis>0:databases/py-redis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.24.2:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>=0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fakeredis>=0:databases/py-fakeredis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}moto>=0:devel/py-moto@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.9.2:science/py-scipy@${PY_FLAVOR} \ ${RUN_DEPENDS_optional} # tests also depend on Kaleido but it isn't clear how to build it USES= python USE_PYTHON= pep517 concurrent autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PATH=${STAGEDIR}${PREFIX}/bin:${PATH} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 4.7.0: 567 failed, 5266 passed, 164 skipped, 892 warnings, 152 errors in 387.83s (0:06:27), many tests failed due to missing kaleido module + somother failures .include diff --git a/misc/py-peft/Makefile b/misc/py-peft/Makefile index dd7b51622c97..63507f40f150 100644 --- a/misc/py-peft/Makefile +++ b/misc/py-peft/Makefile @@ -1,44 +1,44 @@ PORTNAME= peft DISTVERSION= 0.17.1 PORTREVISION= 2 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Parameter-Efficient Fine-Tuning (PEFT) WWW= https://huggingface.co/docs/peft/index \ https://github.com/huggingface/peft LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}accelerate>=0.21.0:misc/py-accelerate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.25.0:misc/py-huggingface-hub@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=1.13.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>0:misc/py-safetensors@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>0:misc/py-transformers@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}datasets>0:misc/py-datasets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}diffusers>0:misc/py-diffusers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sentencepiece>0:textproc/py-sentencepiece@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes # tests fail to run, see https://github.com/huggingface/peft/issues/2789 .include diff --git a/misc/py-pkbar/Makefile b/misc/py-pkbar/Makefile index ab9c27704773..6bde32ce05ab 100644 --- a/misc/py-pkbar/Makefile +++ b/misc/py-pkbar/Makefile @@ -1,23 +1,23 @@ PORTNAME= pkbar DISTVERSION= 0.5 PORTREVISION= 2 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Keras Progress Bar for PyTorch WWW= https://github.com/yueyericardo/pkbar LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-pyEDFlib/Makefile b/misc/py-pyEDFlib/Makefile index 65f35d1c6d78..9fe1517cb1c7 100644 --- a/misc/py-pyEDFlib/Makefile +++ b/misc/py-pyEDFlib/Makefile @@ -1,31 +1,31 @@ PORTNAME= pyEDFlib DISTVERSIONPREFIX= v DISTVERSION= 0.1.42 PORTREVISION= 1 CATEGORIES= misc #MASTER_SITES= PYPI # PyPI version fails: https://github.com/holgern/pyedflib/issues/168 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python library to read/write EDF+/BDF+ files based on EDFlib WWW= https://github.com/holgern/pyedflib LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= fortran python USE_PYTHON= distutils cython autoplist USE_GITHUB= yes GH_ACCOUNT= holgern GH_PROJECT= pyedflib USE_GCC= yes # fails to build with clang: https://github.com/holgern/pyedflib/issues/104 post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyedflib/_extensions/_pyedflib*.so .include diff --git a/misc/py-pymatreader/Makefile b/misc/py-pymatreader/Makefile index a3e656b73359..67fe45df036b 100644 --- a/misc/py-pymatreader/Makefile +++ b/misc/py-pymatreader/Makefile @@ -1,29 +1,29 @@ PORTNAME= pymatreader DISTVERSION= 1.0.0 PORTREVISION= 1 CATEGORIES= misc MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Convenient reader for Matlab mat files WWW= https://gitlab.com/obob/pymatreader LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-regex-commit>0:devel/py-hatch-regex-commit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xmltodict>=0:devel/py-xmltodict@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests fail to run, see https://gitlab.com/obob/pymatreader/-/issues/20 NO_ARCH= yes # tests as of 1.0.0: 25 passed, 629 warnings in 136.24s (0:02:16 .include diff --git a/misc/py-pytorch-lightning/Makefile b/misc/py-pytorch-lightning/Makefile index d5d153278ec7..db571d6781f2 100644 --- a/misc/py-pytorch-lightning/Makefile +++ b/misc/py-pytorch-lightning/Makefile @@ -1,32 +1,32 @@ PORTNAME= pytorch-lightning DISTVERSION= 2.3.3 PORTREVISION= 2 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Lightweight PyTorch wrapper for ML researchers WWW= https://lightning.ai/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fsspec>=2022.5.0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lightning-utilities>=0.10.0:misc/py-lightning-utilities@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=2.0.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchmetrics>=0.7.0:misc/py-torchmetrics@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.57.0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.4.0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.4:devel/py-pyyaml@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-pytorch/Makefile b/misc/py-pytorch/Makefile index 7d8f7051357f..91a649919464 100644 --- a/misc/py-pytorch/Makefile +++ b/misc/py-pytorch/Makefile @@ -1,130 +1,130 @@ PORTNAME= pytorch DISTVERSIONPREFIX= v DISTVERSION= 2.10.0 PORTREVISION= 3 CATEGORIES= misc # machine-learning MASTER_SITES= https://github.com/pytorch/pytorch/releases/download/v${DISTVERSION}/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${PORTNAME}-${DISTVERSIONFULL}${EXTRACT_SUFX} # the main tarball disappears when GH_xx tags are added w/out this line DIST_SUBDIR= ${PORTNAME} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: Tensors and dynamic neural networks in Python WWW= https://pytorch.org/ \ https://github.com/pytorch/pytorch LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_aarch64= build fails: CMake Error at third_party/QNNPACK/CMakeLists.txt:47 (MESSAGE): Unrecognized CMAKE_SYSTEM_NAME = FreeBSD, see https://github.com/pytorch/pytorch/issues/144608 BROKEN_armv7= build fails: CMake Error at third_party/QNNPACK/CMakeLists.txt:47 (MESSAGE): Unrecognized CMAKE_SYSTEM_NAME = FreeBSD, see https://github.com/pytorch/pytorch/issues/144608 BROKEN_i386= build fails: DispatchStub.cpp:162:29: [0m[0;1;31merror: [0m[1muse of undeclared identifier 'AVX2'[0m BUILD_DEPENDS= ${PY_SETUPTOOLS} \ cmake:devel/cmake-core \ gmake:devel/gmake \ pybind11>0:devel/pybind11 \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${LOCALBASE}/include/fxdiv.h:devel/fxdiv \ ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}optree>0:devel/py-optree@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.13.3:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libabsl_base.so:devel/abseil \ libblis.so:math/blis \ libonnx.so:misc/onnx \ libopenblas.so:math/openblas \ libpthreadpool.so:devel/pthreadpool \ libprotobuf.so:devel/protobuf \ libsleef.so:math/sleef RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.13.3:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.10.0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}astunparse>0:devel/py-astunparse@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>0:devel/py-protobuf@${PY_FLAVOR} # optional dependencies USES= compiler:c++17-lang localbase:ldflags mpi:openmpi python USE_PYTHON= pep517 autoplist USE_LDCONFIG= ${PYTHON_SITELIBDIR}/torch/lib # The Python package is named "torch" not "pytorch" PYDISTUTILS_PKGNAME= torch PEP517_INSTALL_CMD= ${PYTHON_CMD} -m installer --destdir ${STAGEDIR} --prefix ${PREFIX} ${BUILD_WRKSRC}/dist/torch-${DISTVERSION}*.whl USE_GITHUB= nodefault GH_TUPLE= pytorch:cpuinfo:1e83a2f:cpuinfo/cpuinfo-with-freebsd-support # https://github.com/pytorch/cpuinfo/pull/230/commits MAKE_ENV= USE_NINJA=no # ninja breaks for some reason MAKE_ENV+= BUILD_TEST=0 # ninja breaks for some reason MAKE_ENV+= USE_MKLDNN=0 # disable MKLDNN that doesn't exist, see https://github.com/pytorch/pytorch/issues/100957 MAKE_ENV+= USE_CUDNN=0 MAKE_ENV+= USE_LAPACK=1 # needed on FreeBSD to run w/out GPU MAKE_ENV+= USE_QNNPACK=0 MAKE_ENV+= USE_DISTRIBUTED=1 LDFLAGS+= -lexecinfo LDFLAGS_powerpc64le= -pthread BINARY_ALIAS= make=${GMAKE} POST_PLIST= fix-plist TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test OPTIONS_DEFINE= VULKAN OPTIONS_DEFAULT= VULKAN # VULKAN is experimental in PyTorch and only simple computations work VULKAN_MAKE_ENV= USE_VULKAN=1 USE_VULKAN_SHADERC_RUNTIME=1 USE_VULKAN_WRAPPER=0 # see https://docs.pytorch.org/tutorials/unstable/vulkan_workflow.html VULKAN_BUILD_DEPENDS= glslc:graphics/shaderc \ vulkan-headers>0:graphics/vulkan-headers VULKAN_LIB_DEPENDS= libvulkan.so:graphics/vulkan-loader .include post-patch: @cd ${WRKSRC} && \ ${RM} -r third_party/cpuinfo third_party/fbgemm/external/cpuinfo && \ ${CP} -r cpuinfo-with-freebsd-support third_party/cpuinfo && \ ${CP} -r cpuinfo-with-freebsd-support third_party/fbgemm/external/cpuinfo do-install: # port should be moved to 'torch', but keep this for now with the hardcoded 'torch' name @${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} @cd ${INSTALL_WRKSRC} && ${SETENVI} ${WRK_ENV} ${MAKE_ENV} ${PEP517_INSTALL_CMD} @${PYTHON_CMD} -B ${PORTSDIR}/Mk/Scripts/strip_RECORD.py \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/torch-${DISTVERSION}*.dist-info/RECORD >> ${_PYTHONPKGLIST} @${REINPLACE_CMD} \ -e '/\.pyc$$/d' \ -e 's|^|${PYTHONPREFIX_SITELIBDIR}/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../etc/|etc/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../bin/|bin/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../include/|include/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../lib/|lib/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../libdata/|libdata/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../libexec/|libexec/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../man/|man/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../sbin/|sbin/|' \ -e 's|^${PYTHONPREFIX_SITELIBDIR}/../../../share/|share/|' \ ${_PYTHONPKGLIST} @cd ${STAGEDIR}${PREFIX} && ${FIND} lib -name '*.pyc' >> ${_PYTHONPKGLIST} fix-plist: # remove the stray %%PYTHON_SITELIBDIR%%/caffe2 file @${REINPLACE_CMD} -e "s|.*/caffe2$$||" ${TMPPLIST} do-test: cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} run_test.py .include diff --git a/misc/py-safetensors/Makefile b/misc/py-safetensors/Makefile index b75f1bbb0e65..e51be986f66d 100644 --- a/misc/py-safetensors/Makefile +++ b/misc/py-safetensors/Makefile @@ -1,77 +1,77 @@ PORTNAME= safetensors DISTVERSIONPREFIX= v DISTVERSION= 0.7.0 PORTREVISION= 4 CATEGORIES= misc python # machine-learning #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simple, safe way to store and distribute tensors WWW= https://huggingface.co/docs/safetensors/index \ https://github.com/huggingface/safetensors LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/../../LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-rust>0:devel/py-setuptools-rust@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}maturin>0:devel/py-maturin@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=1.10:misc/py-pytorch@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3.7.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.12.1:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>=6.70.2:devel/py-hypothesis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>=4.0.0:devel/py-pytest-benchmark@${PY_FLAVOR} USES= cargo python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= huggingface WRKSRC_SUBDIR= bindings/python CARGO_CRATES= allocator-api2-0.2.21 \ autocfg-1.5.0 \ equivalent-1.0.2 \ foldhash-0.2.0 \ hashbrown-0.16.0 \ heck-0.5.0 \ indoc-2.0.7 \ itoa-1.0.15 \ libc-0.2.177 \ memchr-2.7.6 \ memmap2-0.9.9 \ memoffset-0.9.1 \ once_cell-1.21.3 \ portable-atomic-1.11.1 \ proc-macro2-1.0.103 \ pyo3-0.25.1 \ pyo3-build-config-0.25.1 \ pyo3-ffi-0.25.1 \ pyo3-macros-0.25.1 \ pyo3-macros-backend-0.25.1 \ quote-1.0.42 \ rustversion-1.0.22 \ ryu-1.0.20 \ serde-1.0.228 \ serde_core-1.0.228 \ serde_derive-1.0.228 \ serde_json-1.0.145 \ syn-2.0.110 \ target-lexicon-0.13.3 \ unicode-ident-1.0.22 \ unindent-0.2.4 CARGO_BUILD= no CARGO_INSTALL= no CARGO_TEST= no CARGO_TARGET_DIR= ${WRKSRC}/target MAKE_ENV= ${CARGO_ENV} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${BUILD_WRKDIR} BINARY_ALIAS= python3=${PYTHON_CMD} .include diff --git a/misc/py-sagemaker-core/Makefile b/misc/py-sagemaker-core/Makefile index 50e61c80a1d2..05599159d7d9 100644 --- a/misc/py-sagemaker-core/Makefile +++ b/misc/py-sagemaker-core/Makefile @@ -1,45 +1,45 @@ PORTNAME= sagemaker-core DISTVERSION= 2.0.1 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= SageMaker: Core functionalities WWW= https://github.com/aws/sagemaker-python-sdk \ https://github.com/aws/sagemaker-core LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}attrs>=20.3.0:devel/py-attrs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}boto3>=1.35.75<2.0.0:www/py-boto3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>=7.0>=1.4.0:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}omegaconf>=2.1.0:devel/py-omegaconf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}platformdirs>=4.0.0<5.0.0:devel/py-platformdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2.0.0<3.0.0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=1.9.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>=2021.1:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=6.0:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.20.0<3.0.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>=13.0.0:textproc/py-rich@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}schema>=0.7.5:devel/py-schema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}smdebug-rulesconfig>=1.0.1:misc/py-smdebug-rulesconfig@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.9.0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-scikit-fusion/Makefile b/misc/py-scikit-fusion/Makefile index 546b35a57790..80f42741689d 100644 --- a/misc/py-scikit-fusion/Makefile +++ b/misc/py-scikit-fusion/Makefile @@ -1,23 +1,23 @@ PORTNAME= scikit-fusion DISTVERSION= 0.2.1 PORTREVISION= 5 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Data fusion based on recent collective latent factor models WWW= https://github.com/marinkaz/scikit-fusion LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=0.8.4:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.12.0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/misc/py-sentence-transformers/Makefile b/misc/py-sentence-transformers/Makefile index 03371e23bcdc..ed5d8c6adc48 100644 --- a/misc/py-sentence-transformers/Makefile +++ b/misc/py-sentence-transformers/Makefile @@ -1,40 +1,40 @@ PORTNAME= sentence-transformers DISTVERSION= 5.3.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: Ready to use implementations of generative models WWW= https://www.sbert.net/ \ https://github.com/UKPLab/sentence-transformers/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=0.20.0:misc/py-huggingface-hub@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>=1.11.0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}transformers>=4.41.0:misc/py-transformers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.5.0:devel/py-typing-extensions@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}tokenizers>0:textproc/py-tokenizers@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes # tests fail to run, see https://github.com/UKPLab/sentence-transformers/issues/3520 .include diff --git a/misc/py-shap2/Makefile b/misc/py-shap2/Makefile index 3639dc0e21b3..f8a96d8fecfd 100644 --- a/misc/py-shap2/Makefile +++ b/misc/py-shap2/Makefile @@ -1,31 +1,31 @@ PORTNAME= shap2 DISTVERSION= 0.42.0 PORTREVISION= 3 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Unified approach to explain the output of any machine learning model WWW= https://github.com/slundberg/shap LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xgboost>0:misc/py-xgboost@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/shap2/_cext${PYTHON_TAG}.so .include diff --git a/misc/py-soapy_power/Makefile b/misc/py-soapy_power/Makefile index 17614b8da1da..94413b1e559b 100644 --- a/misc/py-soapy_power/Makefile +++ b/misc/py-soapy_power/Makefile @@ -1,23 +1,23 @@ PORTNAME= soapy_power DISTVERSION= 1.6.1 PORTREVISION= 5 CATEGORIES= misc hamradio python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Obtain power spectrum from SoapySDR devices WWW= https://github.com/xmikos/soapy_power LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyFFTW>0:math/py-pyFFTW@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SimpleSoapy>=1.5.0:misc/py-SimpleSoapy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}SimpleSpectral>0:science/py-SimpleSpectral@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist .include diff --git a/misc/py-spandrel/Makefile b/misc/py-spandrel/Makefile index 556bd3b8d813..24b890c5f423 100644 --- a/misc/py-spandrel/Makefile +++ b/misc/py-spandrel/Makefile @@ -1,28 +1,28 @@ PORTNAME= spandrel DISTVERSION= 0.4.2 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for loading and running pre-trained PyTorch models WWW= https://github.com/chaiNNer-org/spandrel LICENSE= MIT BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}einops>0:misc/py-einops@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>0:misc/py-safetensors@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-tflearn/Makefile b/misc/py-tflearn/Makefile index 3b724b8f240b..f41e873d877a 100644 --- a/misc/py-tflearn/Makefile +++ b/misc/py-tflearn/Makefile @@ -1,26 +1,26 @@ PORTNAME= tflearn DISTVERSION= 0.3.2-53 PORTREVISION= 4 DISTVERSIONSUFFIX= -g5c23566 CATEGORIES= misc python # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Modular and transparent deep learning library on top of TensorFlow WWW= http://tflearn.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR} USES= python USE_GITHUB= yes USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-tflite-support/Makefile b/misc/py-tflite-support/Makefile index ac88bb075202..e8f216da15d7 100644 --- a/misc/py-tflite-support/Makefile +++ b/misc/py-tflite-support/Makefile @@ -1,25 +1,25 @@ PORTNAME= tflite-support DISTVERSION= 0.1.0a1 PORTREVISION= 4 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Toolkit for developing/deploying ML/TFLite models WWW= https://www.tensorflow.org/ LICENSE= APACHE20 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>=2.4:devel/py-pybind11@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}absl-py>=0.7.0:devel/py-absl-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.4:devel/py-pybind11@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= distutils concurrent autoplist post-install: @${FIND} ${STAGEDIR}${PREFIX} -name "*.so" | ${XARGS} ${STRIP_CMD} .include diff --git a/misc/py-tflite/Makefile b/misc/py-tflite/Makefile index 48e98c7f5472..75bf37f2dbf5 100644 --- a/misc/py-tflite/Makefile +++ b/misc/py-tflite/Makefile @@ -1,28 +1,28 @@ PORTNAME= tflite DISTVERSIONPREFIX= v DISTVERSION= 2.10.0 PORTREVISION= 1 CATEGORIES= misc python # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Parse TensorFlow Lite models in Python WWW= https://jackwish.net/tflite/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flatbuffers>0:devel/py-flatbuffers@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= jackwish NO_ARCH= yes .include diff --git a/misc/py-thermocouples_reference/Makefile b/misc/py-thermocouples_reference/Makefile index 49f1dae7ec91..1876ce0b0d6e 100644 --- a/misc/py-thermocouples_reference/Makefile +++ b/misc/py-thermocouples_reference/Makefile @@ -1,28 +1,28 @@ PORTNAME= thermocouples_reference DISTVERSION= 0.20 PORTREVISION= 2 CATEGORIES= misc MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Thermocouple emf reference functions WWW= https://pypi.org/project/thermocouples_reference/ LICENSE= PD #BUILD_DEPENDS= ${PY_SETUPTOOLS} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} do-test: @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test.py .include diff --git a/misc/py-timm-vis/Makefile b/misc/py-timm-vis/Makefile index 1424eb94ba63..1ecf3fee59a2 100644 --- a/misc/py-timm-vis/Makefile +++ b/misc/py-timm-vis/Makefile @@ -1,29 +1,29 @@ PORTNAME= timm-vis DISTVERSION= 2.0.0 PORTREVISION= 2 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Visualizer for PyTorch image models WWW= https://github.com/novice03/timm-vis LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/misc/py-torch-geometric/Makefile b/misc/py-torch-geometric/Makefile index 359b99a030c1..884b5cbe0a7a 100644 --- a/misc/py-torch-geometric/Makefile +++ b/misc/py-torch-geometric/Makefile @@ -1,54 +1,54 @@ PORTNAME= torch-geometric DISTVERSION= 2.6.1 PORTREVISION= 2 CATEGORIES= misc python # machine-learning #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Graph neural network library for PyTorch WWW= https://pyg.org/ LICENSE= MIT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dgl>0:math/py-dgl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.8.0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}faiss>0:math/py-faiss@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>0:misc/py-huggingface-hub@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch-lightning>0:misc/py-pytorch-lightning@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchmetrics>0:misc/py-torchmetrics@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wandb>0:misc/py-wandb@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yacs>0:devel/py-yacs@${PY_FLAVOR} #TEST_DEPENDS additionally needs misc/py-torch-sparse, misc/py-pyg_lib, etc. for some skipped tests USES= python USE_PYTHON= pep517 autoplist pytest # 27 tests fail, see https://github.com/pyg-team/pytorch_geometric/issues/9660 USE_GITHUB= yes GH_ACCOUNT= pyg-team GH_PROJECT= pytorch_geometric NO_ARCH= yes # tests as of version 2.6.1: 17 failed, 5452 passed, 986 skipped, 12 warnings in 330.89s (0:05:30) .include diff --git a/misc/py-torchao/Makefile b/misc/py-torchao/Makefile index 77461d18f247..81b83a47dc2e 100644 --- a/misc/py-torchao/Makefile +++ b/misc/py-torchao/Makefile @@ -1,33 +1,33 @@ PORTNAME= torchao DISTVERSIONPREFIX= v DISTVERSION= 0.13.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: Package for applying ao techniques to GPU models WWW= https://docs.pytorch.org/ao/stable/index.html \ https://github.com/pytorch/ao LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= pytorch GH_PROJECT= ao GH_TUPLE= NVIDIA:cutlass:e51efbf:cutlass/third_party/cutlass NO_ARCH= yes # tests fail with: caught unexpected SystemExit! .include diff --git a/misc/py-torchmetrics/Makefile b/misc/py-torchmetrics/Makefile index b2f5fea4fd8c..4dd83ff01504 100644 --- a/misc/py-torchmetrics/Makefile +++ b/misc/py-torchmetrics/Makefile @@ -1,37 +1,37 @@ PORTNAME= torchmetrics DISTVERSIONPREFIX= v DISTVERSION= 1.8.1 PORTREVISION= 2 CATEGORIES= misc python # machine-learning #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch native metrics WWW= https://lightning.ai/docs/torchmetrics/stable/ \ https://github.com/Lightning-AI/torchmetrics LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lightning-utilities>=0.8.0:misc/py-lightning-utilities@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nltk>=3.6:textproc/py-nltk@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>17.1:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}regex>=2021.9.24:textproc/py-regex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.41.0:misc/py-tqdm@${PY_FLAVOR} # some optional dependencies for some sections are missing BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist USE_GITHUB= yes GH_ACCOUNT= Lightning-AI NO_ARCH= yes .include diff --git a/misc/py-torchsummary/Makefile b/misc/py-torchsummary/Makefile index 8fa6259c5153..93d289fae796 100644 --- a/misc/py-torchsummary/Makefile +++ b/misc/py-torchsummary/Makefile @@ -1,22 +1,22 @@ PORTNAME= torchsummary DISTVERSION= 1.5.1 PORTREVISION= 1 CATEGORIES= misc # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: Model summary in PyTorch WWW= https://github.com/sksq96/pytorch-summary LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/misc/py-torchvision/Makefile b/misc/py-torchvision/Makefile index b63b7f4d902c..83ac66a07693 100644 --- a/misc/py-torchvision/Makefile +++ b/misc/py-torchvision/Makefile @@ -1,44 +1,44 @@ PORTNAME= torchvision DISTVERSIONPREFIX= v DISTVERSION= 0.25.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch: Datasets, transforms and models specific to computer vision WWW= https://pytorch.org/vision/stable/index.html \ https://github.com/pytorch/vision LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libpng16.so:graphics/png \ libwebp.so:graphics/webp -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} PY_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pillow>=5.3.0:graphics/py-pillow@${PY_FLAVOR} # image backend BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}fsspec>0:filesystems/py-fsspec@${PY_FLAVOR} \ pybind11>0:devel/pybind11 \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} BUILD_DEPENDS+= ninja:devel/ninja # build uses the C compiler for C++ files w/out ninja, and fails RUN_DEPENDS= ${PY_DEPENDS} USES= compiler:c++17-lang jpeg python USE_PYTHON= pep517 autoplist pytest # tests run in a very high memory ; in 0.17.1 tests fail to run, see https://github.com/pytorch/vision/issues/8278 USE_GITHUB= yes GH_ACCOUNT= pytorch GH_PROJECT= vision MAKE_ENV= TORCHVISION_INCLUDE=${LOCALBASE}/include # workaround for build failure suggested here: https://github.com/pytorch/vision/issues/8397#issuecomment-2168351425 post-install: # strip binaries @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/torchvision/_C.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/torchvision/image.so .include diff --git a/misc/py-transformers/Makefile b/misc/py-transformers/Makefile index 06434ff63dfd..07c3e820366b 100644 --- a/misc/py-transformers/Makefile +++ b/misc/py-transformers/Makefile @@ -1,64 +1,64 @@ PORTNAME= transformers DISTVERSION= 5.3.0 PORTREVISION= 1 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= State-of-the-art Machine Learning for JAX, PyTorch and TensorFlow WWW= https://huggingface.co/transformers \ https://github.com/huggingface/transformers LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}huggingface-hub>=1.3.0:misc/py-huggingface-hub@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=20.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.1:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}regex>=2019.12.17:textproc/py-regex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}safetensors>=0.4.3:misc/py-safetensors@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tokenizers>=0.22:textproc/py-tokenizers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.27:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typer>0:devel/py-typer@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pytorch>=2.1:misc/py-pytorch@${PY_FLAVOR} # vision RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} # speech/audio RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}librosa>0:audio/py-librosa@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchaudio>0:audio/py-torchaudio@${PY_FLAVOR} # serving RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fastapi>0:www/py-fastapi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}openai>0:misc/py-openai@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>0:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}starlette>0:www/py-starlette@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uvicorn>0:www/py-uvicorn@${PY_FLAVOR} # assorted RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}accelerate>=0.26.0:misc/py-accelerate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}blobfile>=0:net/py-blobfile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}codecarbon>=2.8.1:misc/py-codecarbon@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ftfy>=0:textproc/py-ftfy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}NATTEN>=0.14.6:misc/py-NATTEN@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}num2words>=0:devel/py-num2words@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}optuna>=0:misc/py-optuna@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sagemaker>=2.31.0:misc/py-sagemaker@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sentencepiece>=0.1.91:textproc/py-sentencepiece@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tiktoken>=0:textproc/py-tiktoken@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}timm>=1.0.19:misc/py-timm@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes .include diff --git a/misc/py-tvm/Makefile b/misc/py-tvm/Makefile index 1e6fe0ded16c..8d3373a5ff9b 100644 --- a/misc/py-tvm/Makefile +++ b/misc/py-tvm/Makefile @@ -1,60 +1,60 @@ PORTNAME= tvm DISTVERSIONPREFIX= v DISTVERSION= 0.19.0 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Deep learning compiler stack for cpu, gpu and specialized accelerators WWW= https://tvm.ai/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libtvm.so:misc/tvm -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}attrs>0:devel/py-attrs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}synr>0:devel/py-synr@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent pytest # autoplist fails; tests fail, see https://github.com/apache/tvm/issues/13132 USE_GITHUB= yes GH_ACCOUNT= apache GH_PROJECT= tvm GH_TUPLE= dmlc:dlpack:e2bdd3b:dlpack/3rdparty/dlpack \ dmlc:dmlc-core:09511cf:dmlc_core/3rdparty/dmlc-core BUILD_WRKSRC= ${WRKSRC}/python INSTALL_WRKSRC= ${WRKSRC}/python LLVM_VERSION= ${LLVM_DEFAULT} # same as in misc/tvm RUN_DEPENDS= llvm-config${LLVM_VERSION}:devel/llvm${LLVM_VERSION} MAKE_ENV+= FREEBSD_LIBRARY_PATH=${LOCALBASE}/lib TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} BINARY_ALIAS= git=false post-patch: @${REINPLACE_CMD} 's|dll_path = \[\]|dll_path = ["${LOCALBASE}/lib"]|' ${WRKSRC}/python/tvm/_ffi/libinfo.py post-install: # strip binaries @${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name "*.so" | ${XARGS} ${STRIP_CMD} # autoplist because 1) python's autoplist is inaccurate for tvm and 2) because there's the add-on package topi @cd ${STAGEDIR}${PREFIX} && \ ${FIND} ${PYTHON_SITELIBDIR:C|${LOCALBASE}/||} -type f -or -type l > ${TMPPLIST} @${ECHO} "bin/tvmc" >> ${TMPPLIST} # Not clear from docs how to run Python tests, see https://github.com/apache/tvm/issues/12158 .include diff --git a/misc/py-uhi/Makefile b/misc/py-uhi/Makefile index 5e300b7a0735..e264d77e5a07 100644 --- a/misc/py-uhi/Makefile +++ b/misc/py-uhi/Makefile @@ -1,35 +1,35 @@ PORTNAME= uhi DISTVERSION= 0.5.0 PORTREVISION= 1 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Universal Histogram Interface WWW= https://uhi.readthedocs.io/en/latest/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fastjsonschema>0:devel/py-fastjsonschema@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}boost-histogram>=1.0:misc/py-boost-histogram@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} pre-configure: # uhi is officially built with "build" (https://github.com/pypa/build), but this is easily circumvented with this simple setup.py @( \ ${ECHO} "from setuptools import setup" && \ ${ECHO} "setup()" \ ) > ${WRKSRC}/setup.py .include diff --git a/misc/py-wurlitzer/Makefile b/misc/py-wurlitzer/Makefile index ba6c60b1c645..545b427581a9 100644 --- a/misc/py-wurlitzer/Makefile +++ b/misc/py-wurlitzer/Makefile @@ -1,28 +1,28 @@ PORTNAME= wurlitzer PORTVERSION= 3.1.1 PORTREVISION= 3 CATEGORIES= misc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Capture C-level output in context managers WWW= https://github.com/minrk/wurlitzer LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent pep517 pytest NO_ARCH= yes # make tests: 15 passed, 1 skipped (test.py:178: requires _get_max_pipe_size) TEST_ARGS= test.py .include diff --git a/misc/py-xformers/Makefile b/misc/py-xformers/Makefile index c3627e5b02a7..b482f6fcb53a 100644 --- a/misc/py-xformers/Makefile +++ b/misc/py-xformers/Makefile @@ -1,26 +1,26 @@ PORTNAME= xformers DISTVERSION= 0.0.25 PORTREVISION= 3 CATEGORIES= misc python # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Transformers building blocks, supporting a composable construction WWW= https://facebookresearch.github.io/xformers/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= pybind11>0:devel/pybind11 \ ${PYTHON_PKGNAMEPREFIX}pytorch>=2.1:misc/py-pytorch@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytorch>=2.1:misc/py-pytorch@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++17-lang localbase python USE_PYTHON= distutils autoplist pytest # tests fail, see https://github.com/facebookresearch/xformers/issues/1003 post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/xformers/_C.so .include diff --git a/misc/py-xgboost/Makefile b/misc/py-xgboost/Makefile index eef7e565ea23..d7b1aca7fa80 100644 --- a/misc/py-xgboost/Makefile +++ b/misc/py-xgboost/Makefile @@ -1,48 +1,48 @@ PORTNAME= xgboost DISTVERSIONPREFIX= v DISTVERSION= 3.1.3 PORTREVISION= 1 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT, GBM) WWW= https://xgboost.ai/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/../LICENSE BROKEN_armv7= compilation fails due to type conversion issues, like on i386, but the upstream says that they don't support 32-bit architectures BROKEN_i386= compilation fails, see https://github.com/dmlc/xgboost/issues/10002 BUILD_DEPENDS= cmake:devel/cmake-core \ ${PYTHON_PKGNAMEPREFIX}hatchling>=1.12.1:devel/py-hatchling@${PY_FLAVOR} LIB_DEPENDS= libdmlc.so:devel/dmlc-core -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pandas>=1.2:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyarrow>0:databases/py-pyarrow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} USES= compiler:c11 python localbase:ldflags USE_PYTHON= pep517 autoplist pytest USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= dmlc WRKSRC_SUBDIR= python-package LDFLAGS+= -lexecinfo \ -ldmlc PYDISTUTILS_INSTALLARGS= --use-system-libxgboost # this is ignored so that setup.py has to be patched, see https://github.com/dmlc/xgboost/issues/6879 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/../tests/python post-install: @${PYTHON_CMD} -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/xgboost/lib/libxgboost.so .include diff --git a/misc/pytorch/Makefile b/misc/pytorch/Makefile index a51870ac6398..d7c5294e40ac 100644 --- a/misc/pytorch/Makefile +++ b/misc/pytorch/Makefile @@ -1,83 +1,83 @@ PORTNAME= pytorch DISTVERSIONPREFIX= v DISTVERSION= 2.8.0 PORTREVISION= 2 CATEGORIES= misc # machine-learning MASTER_SITES= https://github.com/pytorch/pytorch/releases/download/v${DISTVERSION}/ DIST_SUBDIR= ${PORTNAME} MAINTAINER= yuri@FreeBSD.org COMMENT= Tensors and dynamic neural networks in Python (C++ library) WWW= https://pytorch.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_aarch64= compilation fails: clang crashes, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=294067 BROKEN_i386= compilation fails: error: use of undeclared identifier 'AVX2' BUILD_DEPENDS= gmake:devel/gmake \ ${LOCALBASE}/include/fxdiv.h:devel/fxdiv \ ${PY_SETUPTOOLS} LIB_DEPENDS= libabsl_base.so:devel/abseil \ libblis.so:math/blis \ libopenblas.so:math/openblas \ libmpi_cxx.so:net/openmpi4 \ libonnx.so:misc/onnx \ libpthreadpool.so:devel/pthreadpool \ libprotobuf.so:devel/protobuf \ libsleef.so:math/sleef USES= compiler:c++17-lang cmake localbase:ldflags python # requires python even with PYTHON=off CMAKE_OFF= BUILD_CUSTOM_PROTOBUF USE_CUDA USE_ROCM USE_NNPACK USE_QNNPACK USE_PYTORCH_QNNPACK \ USE_FBGEMM # workaround recommended by the upstream here: https://github.com/pytorch/pytorch/issues/28337 CMAKE_ON= USE_SYSTEM_PYBIND11 \ USE_SYSTEM_SLEEF \ USE_SYSTEM_ONNX # see other USE_SYSTEM_xx in CMakeLists.txt CMAKE_ON+= ONNX_USE_LITE_PROTO # workaround for the protobuf-related failure described here: https://github.com/onnx/optimizer/issues/38 CMAKE_ARGS= -DPSIMD_SOURCE_DIR=${WRKSRC}/third_party/psimd \ -DPYTHON_EXECUTABLE=${PYTHON_CMD} MAKE_ENV= USE_NINJA=no # ninja breaks for some reason LDFLAGS+= -lexecinfo \ -pthread BINARY_ALIAS= make=${GMAKE} git=true OPTIONS_DEFINE= PYTHON # PYTHON only provides python support for the py-PyTorch port - it's not a python binding OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= BUILD_PYTHON -PYTHON_PY_DEPENDS= ${PYNUMPY} \ +PYTHON_PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR} PYTHON_BUILD_DEPENDS= ${PYTHON_PY_DEPENDS} \ ${PY_SETUPTOOLS} \ pybind11>0:devel/pybind11 PYTHON_RUN_DEPENDS= ${PYTHON_PY_DEPENDS} .include .if ${ARCH} == "amd64" PLIST_SUB+= AMD64="" .else PLIST_SUB+= AMD64="@comment " .endif post-patch: # replace malloc.h -> stdlib.h in many places @cd ${WRKSRC} && for f in $$(${GREP} -rl "include " * | ${GREP} -E "\.(c|cpp|h|hpp)$$"); do \ ${REINPLACE_CMD} -i'' -E "s|include |include |" $$f; \ done # remove bundled fmt @${RM} -r ${WRKSRC}/third_party/fmt post-install: # functorch.so is installed back into the source directory, see https://github.com/pytorch/pytorch/issues/91524 @${RM} $$(${FIND} ${STAGEDIR} -name functorch.so) # https://github.com/pytorch/pytorch/issues/24417 @${FIND} ${STAGEDIR} -type d -empty -delete .include diff --git a/misc/urh/Makefile b/misc/urh/Makefile index b9b193177d9d..36f19eca5fe7 100644 --- a/misc/urh/Makefile +++ b/misc/urh/Makefile @@ -1,38 +1,38 @@ PORTNAME= urh DISTVERSION= 2.9.8 PORTREVISION= 3 CATEGORIES= misc hamradio python MASTER_SITES= PYPI MAINTAINER= yuri@FreeBSD.org COMMENT= Universal Radio Hacker: investigate wireless protocols like a boss WWW= https://github.com/jopohl/urh/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE .if !exists(/usr/include/omp.h) BROKEN= requires OpenMP support that is missing on this architecture .endif -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyzmq>0:net/py-pyzmq@${PY_FLAVOR} USES= fortran localbase python pyqt:6 USE_PYQT= pyqt6 USE_PYTHON= autoplist cython distutils noflavors PLIST_FILES= bin/urh.shadow post-install: @${MV} ${STAGEDIR}${PREFIX}/bin/urh ${STAGEDIR}${PREFIX}/bin/urh.shadow @(echo "#!/bin/sh"; \ echo ""; \ echo "LD_PRELOAD=${PREFIX}/lib/gcc${GCC_DEFAULT}/libgcc_s.so ${PREFIX}/bin/urh.shadow \"$$@\"" \ ) > ${STAGEDIR}${PREFIX}/bin/urh @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/urh ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/urh/cythonext/*.so .include diff --git a/multimedia/pitivi/Makefile b/multimedia/pitivi/Makefile index 0f998254a016..957e26f4703c 100644 --- a/multimedia/pitivi/Makefile +++ b/multimedia/pitivi/Makefile @@ -1,38 +1,38 @@ PORTNAME= pitivi DISTVERSION= 2023.03 PORTREVISION= 4 CATEGORIES= multimedia MASTER_SITES= GNOME MAINTAINER= ports@FreeBSD.org COMMENT= Gstreamer based non-linear audio/video editor WWW= https://www.pitivi.org LICENSE= LGPL21+ BUILD_DEPENDS= gst-validate-launcher:devel/gstreamer1-devtools \ itstool:textproc/itstool RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}gstreamer1>=1.14.0:multimedia/py-gstreamer1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycairo>=0:graphics/py-pycairo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cpe desktop-file-utils gettext-tools gnome gstreamer meson \ pkgconfig python shared-mime-info shebangfix tar:xz USE_GNOME= cairo gsound gtk30 pygobject3 USE_GSTREAMER= bad editing-services gdkpixbuf good gtk USE_LDCONFIG= yes SHEBANG_FILES= bin/pitivi.in \ getenvvar.py \ tests/__init__.py \ tests/validate-tests/manager.py \ tests/validate-tests/runtests MESON_ARGS= -Db_lundef=false BINARY_ALIAS= python3=${PYTHON_VERSION} .include diff --git a/multimedia/py-pretty_midi/Makefile b/multimedia/py-pretty_midi/Makefile index 75b8d02a9cef..5d34a3590344 100644 --- a/multimedia/py-pretty_midi/Makefile +++ b/multimedia/py-pretty_midi/Makefile @@ -1,22 +1,22 @@ PORTNAME= pretty_midi DISTVERSION= 0.2.10 PORTREVISION= 2 CATEGORIES= multimedia python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Utility functions for handling MIDI data in a nice/intuitive way WWW= https://github.com/craffel/pretty-midi LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mido>=1.1.16:multimedia/py-mido@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/multimedia/py-scenedetect/Makefile b/multimedia/py-scenedetect/Makefile index 6d8490ac37bd..07ec02dea49c 100644 --- a/multimedia/py-scenedetect/Makefile +++ b/multimedia/py-scenedetect/Makefile @@ -1,31 +1,31 @@ PORTNAME= scenedetect DISTVERSION= 0.6.7 PORTREVISION= 1 CATEGORIES= multimedia python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= atanubiswas484@gmail.com COMMENT= OpenCV-based video scene detection program and Python library WWW= https://www.scenedetect.com/ \ https://github.com/Breakthrough/PySceneDetect/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=63.1:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.37:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}click>=8.0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}platformdirs>0:devel/py-platformdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ffmpeg:multimedia/ffmpeg \ mkvmerge:multimedia/mkvtoolnix \ opencv>=0:graphics/opencv USES= python USE_PYTHON= autoplist pep517 pytest NO_ARCH= yes .include diff --git a/multimedia/py-torchcodec/Makefile b/multimedia/py-torchcodec/Makefile index cc9cdf47f75d..fc040225f6cd 100644 --- a/multimedia/py-torchcodec/Makefile +++ b/multimedia/py-torchcodec/Makefile @@ -1,42 +1,42 @@ PORTNAME= torchcodec DISTVERSIONPREFIX= v DISTVERSION= 0.10.0 PORTREVISION= 1 CATEGORIES= multimedia python #MASTER_SITES= PYPI # no tarball PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES+= 906a2753082f6591df841331c7713a8c30e1f7f4.patch:-p1 # https://github.com/meta-pytorch/torchcodec/pull/1193 MAINTAINER= yuri@FreeBSD.org COMMENT= PyTorch media decoding and encoding WWW= https://github.com/pytorch/torchcodec LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ pybind11>0:devel/pybind11 LIB_DEPENDS= libabsl_base.so:devel/abseil \ libavformat.so:multimedia/ffmpeg \ libprotobuf.so:devel/protobuf RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}torchvision>0:misc/py-torchvision@${PY_FLAVOR} -TEST_DEPENDS= ${PYNUMPY} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:indirect compiler:c++17-lang python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= meta-pytorch #MAKE_ENV= BUILD_AGAINST_ALL_FFMPEG_FROM_S3=1 # downloads binaries with this choice, see https://github.com/meta-pytorch/torchcodec/issues/1194 MAKE_ENV= I_CONFIRM_THIS_IS_NOT_A_LICENSE_VIOLATION=1 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 0.10.0: 290 failed, 910 passed, 546 skipped in 357.51s (0:05:57), see https://github.com/meta-pytorch/torchcodec/issues/1192 .include diff --git a/science/abinit/Makefile b/science/abinit/Makefile index 5308e985f03e..9409e66c23d2 100644 --- a/science/abinit/Makefile +++ b/science/abinit/Makefile @@ -1,136 +1,136 @@ PORTNAME= abinit DISTVERSION= 10.6.5 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Full-featured atomic-scale first-principles simulation software WWW= https://www.abinit.org \ https://github.com/abinit/abinit LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING ONLY_FOR_ARCHS= amd64 powerpc64 powerpc64le BUILD_DEPENDS= gm4:devel/m4 \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygments>=0:textproc/py-pygments@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}graphviz>0:graphics/py-graphviz@${PY_FLAVOR} LIB_DEPENDS= libelpa.so:math/elpa \ libsz.so:science/libaec \ libxc.so:science/libxc \ libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float \ libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf \ libxmlf90.so:textproc/xmlf90 \ libwannier.so:science/wannier90 \ libnetcdff.so:science/netcdf-fortran RUN_DEPENDS= atompaw:science/atompaw TEST_DEPENDS= bash:shells/bash \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ libyaml>0:textproc/libyaml USES= autoreconf:build blaslapack:netlib fortran gmake gnome localbase:ldflags \ python shebangfix USE_GITHUB= yes USE_GNOME= libxml2 SHEBANG_FILES= config/scripts/* doc/tutorial/paral_bandpw_assets/abinit.sub.* SHEBANG_GLOB= *.py *.sh GNU_CONFIGURE= yes CONFIGURE_ENV= H5CC="${LOCALBASE}/bin/h5cc" \ HDF5_CFLAGS="-I${LOCALBASE}/include" \ HDF5_LDFLAGS="-L${LOCALBASE}/lib -lhdf5" \ LINALG_FCFLAGS="-I${LOCALBASE}/include/elpa-2019.05.002/modules" \ LINALG_LIBS="${BLASLIB} ${LAPACKLIB} -lelpa" \ NETCDF_FORTRAN_FCFLAGS=-I${LOCALBASE}/include \ XMLF90_FCFLAGS=-I${LOCALBASE}/include/xmlf90 \ WANNIER90_LIBS="${BLASLIB} ${LAPACKLIB} -lwannier" CONFIGURE_ARGS= --with-fft --with-libxc --with-libxml2 --with-netcdf \ --with-netcdf-fortran --with-wannier90 --with-xmlf90 FCFLAGS+= -ffree-line-length-none TEST_TARGET= tests_abirules tests_buildsys # Many tests print RuntimeError, https://github.com/abinit/abinit/issues/64 TEST_WRKSRC= ${WRKSRC}/abichecks PORTDOCS= * BINARY_ALIAS= git=false \ gfortran=gfortran${GCC_DEFAULT} # for tests OPTIONS_DEFINE= DOCS OPENMP OPTIONS_DEFAULT= MPICH OPTIONS_RADIO= MPIX OPTIONS_RADIO_MPIX= NOMPI MPICH OPENMPI OPENMP_CONFIGURE_ENABLE= openmp OPENMP_LDFLAGS= -lomp MIX_DESC= MPI options NOMPI_DESC= Do not use MPI NOMPI_CONFIGURE_ON= CC_LDFLAGS="${LDFLAGS}" CXX_LDFLAGS="${LDFLAGS}" \ FC_LDFLAGS="${LDFLAGS}" CFLAGS="${CFLAGS}" OPENMPI_USES= mpi:openmpi OPENMPI_CONFIGURE_ON= mpi=yes OPENMPI_VARS= FCFLAGS+="`pkg-config --cflags ompi-fort`" \ CFLAGS+="${MPI_CFLAGS}" \ LDFLAGS+="${MPI_LDFLAGS}" OPENMPI_CONFIGURE_ENV= ${MPIX_CONFIGURE_ENV} \ MPI_FCFLAGS="`pkg-config --cflags ompi-fort`" MPICH_USES= mpi:mpich MPICH_CONFIGURE_ON= mpi=yes MPICH_VARS= FFLAGS+=-I${LOCALBASE}/include FCFLAGS+=-I${LOCALBASE}/include \ CONFIGURE_ENV+=MPI_LIBS="`pkg-config --libs mpich` -lmpifort" \ CONFIGURE_ENV+MPI_LDFLAGS="`pkg-config --libs mpich` -lmpifort" MPICH_CONFIGURE_ENV= ${MPIX_CONFIGURE_ENV} MPIX_CONFIGURE_ENV= CC_LDFLAGS="${MPI_LIBS} ${LDFLAGS}" \ CXX_LDFLAGS="${MPI_LIBS} ${LDFLAGS}" \ FC_LDFLAGS="${MPI_LIBS} ${LDFLAGS}" \ CFLAGS="${MPI_CFLAGS} ${CFLAGS} ${CFLAGS_F2018}" \ MPI_CPPFLAGS="${MPI_CFLAGS}" \ MPI_LIBS="${MPI_LIBS}" \ MPI_LDFLAGS="${MPI_LIBS}" # When OpenMPI is enabled, put its related variables 1st to avoid conflicts with MPICH .if defined(WITH_LEVMAR) # --with-levmar seems deprecated LIB_DEPENDS+= liblevmar.so:math/levmar CONFIGURE_ENV+= LEVMAR_LIBS="-llevmar ${BLASLIB} ${LAPACKLIB}" CONFIGURE_ARGS+= --with-levmar .endif .include .if ${GCC_DEFAULT} >= 10 FCFLAGS+= -fallow-argument-mismatch # see https://github.com/abinit/abinit/issues/41 .endif pre-configure: # version lines below are workaround for https://github.com/abinit/abinit/issues/75 @cd ${WRKSRC} && \ ${ECHO} ${PORTVERSION} > .version && \ ${ECHO} ${PORTVERSION} > .tarball-version && \ ./autogen.sh post-install-DOCS-on: ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/doc/tutorial/paral_moldyn_assets/diag_moldyn.py ${RM} ${WRKSRC}/doc/tutorial/paral_moldyn_assets/diag_moldyn.py.bak @${MKDIR} ${STAGEDIR}${DOCSDIR} ${CP} -R ${WRKSRC}/doc/tutorial ${STAGEDIR}${DOCSDIR} pre-test: ${TOUCH} ${TEST_WRKSRC}/make.log test-long: # run all examples from tutorial/Input @cd ${WRKSRC}/tests/tutorial/Input && \ for abi in `${LS} *.abi`; do \ ${ECHO} "===> Running example $$abi" && \ ${SETENV} PATH=${STAGEDIR}${PREFIX}/bin:${PATH} ABI_PSPDIR=${WRKSRC}/tests/Psps_for_tests abinit $$abi; \ done # fftw3 not enabled because libfftw3_mpi is required but not packaged .include diff --git a/science/agrum/Makefile b/science/agrum/Makefile index b690c6ac65ea..de3828ee8c16 100644 --- a/science/agrum/Makefile +++ b/science/agrum/Makefile @@ -1,66 +1,66 @@ PORTNAME= agrum DISTVERSION= 2.3.0 PORTREVISION= 2 CATEGORIES= science math MAINTAINER= yuri@FreeBSD.org COMMENT= Graphical modeler for Bayesian networks, influence diagrams, etc WWW= https://agrum.gitlab.io \ https://gitlab.com/agrumery/aGrUM LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.md TEST_DEPENDS= swig:devel/swig USES= cmake compiler:c++20-lang shebangfix # the 'act' executable uses 'python' and is broken, when act is broken CMakeLists.txt builds with default configuration which is fine USE_LDCONFIG= yes LLD_UNSAFE= yes USE_GITLAB= yes GL_ACCOUNT= agrumery GL_PROJECT= aGrUM GL_TAGNAME= 50ed291c SHEBANG_FILES= act CMAKE_ARGS= -DPython_EXECUTABLE=${PYTHON_CMD} CMAKE_OFF= USE_SWIG PLIST_SUB+= VERSION=${PORTVERSION} OPTIONS_DEFINE= ODBC OPENMP PYTHON OPTIONS_DEFAULT= OPENMP PYTHON OPTIONS_SUB= yes ODBC_CMAKE_BOOL= USE_NANODBC ODBC_USES= localbase:ldflags ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC OPENMP_CMAKE_BOOL= USE_OPENMP PYTHON_CMAKE_BOOL= BUILD_PYTHON PYTHON_USES= python PYTHON_PLIST_SUB= PYTHON_VER_MAJ=${PYTHON_VER:R} -PYTHON_RUN_DEPENDS= ${PYNUMPY} \ +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib-inline>0:math/py-matplotlib-inline@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nbconvert>0:devel/py-nbconvert@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydotplus>0:graphics/py-pydotplus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} # see wrappers/pyAgrum/requirements.txt and wrappers/pyAgrum/testunits/optional_requirements.txt BINARY_ALIAS= gcc=${CC} g++=${CXX} # only for tests, see https://gitlab.com/agrumery/aGrUM/-/issues/100 do-test: @cd ${WRKSRC} && \ ${SETENV} ${MAKE_ENV} ./act test release agrum -t all # tests as of 2.3.0: Failed 0 of 1486 tests .include diff --git a/science/cantera/Makefile b/science/cantera/Makefile index 353d2b626024..25d8b159eced 100644 --- a/science/cantera/Makefile +++ b/science/cantera/Makefile @@ -1,106 +1,106 @@ PORTNAME= cantera DISTVERSIONPREFIX= v DISTVERSION= 3.1.0 PORTREVISION= 5 CATEGORIES= science # chemistry physics MAINTAINER= yuri@FreeBSD.org COMMENT= Chemical kinetics, thermodynamics, and transport tool suite WWW= https://cantera.org \ https://github.com/Cantera/cantera LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/License.txt BUILD_DEPENDS= googletest>0:devel/googletest \ ${LOCALBASE}/include/boost/algorithm/string.hpp:devel/boost-libs \ highfive>0:science/highfive \ ${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR} LIB_DEPENDS= libfmt.so:devel/libfmt \ libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas \ libyaml-cpp.so:devel/yaml-cpp USES= compiler:c++17-lang eigen:3 gettext-runtime localbase scons USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= Cantera GH_TUPLE= LLNL:sundials:887af43:sundials/ext/sundials # bundled sundials is only needed for the Octave option GH_TUPLE+= cantera:cantera-example-data:1a5d27e:example_data/data/example_data NO_CCACHE= yes # ccache breaks scons build for some reason MAKE_ARGS= system_eigen='y' \ system_sundials='n' \ system_fmt='y' \ system_yamlcpp='y' \ googletest='system' \ sundials_include='${LOCALBASE}/include/sundials' \ extra_inc_dirs="${LOCALBASE}/include:${LOCALBASE}/include/eigen3" \ extra_lib_dirs="${LOCALBASE}/lib" \ debug='no' \ cc_flags="${CXXFLAGS}" \ prefix="${PREFIX}" MAKE_ENV= INSTALL_MANPAGES=y ALL_TARGET= build TEST_TARGET= test # Multiple failures in the testsuite, see https://github.com/Cantera/cantera/issues/1829 OPTIONS_DEFINE= OCTAVE PYTHON OPTIONS_DEFAULT= PYTHON # OCTAVE is off by default because Octave interface is not a frequently requested feature OPTIONS_SUB= yes OCTAVE_DESC= Octave support OCTAVE_MAKE_ARGS= matlab_toolbox=y matlab_path=${LOCALBASE} OCTAVE_CXXFLAGS= -I${LOCALBASE}/include/octave-${OCTAVE_VERSION}/octave OCTAVE_LIB_DEPENDS= liboctave.so:math/octave OCTAVE_SUB_FILES= pkg-message-octave OCTAVE_USES= octave:env OCTAVE_BROKEN= Octave support needs to be updated PYTHON_USES= python PYTHON_USES_OFF= python:env PYTHON_USE= PYTHON=cython PYTHON_MAKE_ARGS= python_cmd=${PYTHON_CMD} python_package=full PYTHON_MAKE_ARGS_OFF= python_package="none" PYTHON_BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} -PYTHON_RUN_DEPENDS= ${PYNUMPY} \ +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>0:devel/py-ruamel.yaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} do-install: cd ${WRKSRC} && \ ${MAKE_CMD} install \ stage_dir="${STAGEDIR}" @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libcantera_shared.so.${PORTVERSION} do-install-PYTHON-on: # delete .pyc files to fix the stage reference problem, see https://github.com/Cantera/cantera/issues/1601 @for f in `${FIND} ${STAGEDIR} -name "*.pyc"`; do \ ${RM} $${f}; \ done # strip @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/cantera/_cantera.cpython-${PYTHON_SUFFIX}.so \ ${STAGEDIR}${PREFIX}/lib/libcantera_python3_11.so # remove empty dirs @${RMDIR} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/cantera/__pycache__ \ ${STAGEDIR}${PYTHON_SITELIBDIR}/cantera/with_units/__pycache__ post-patch-OCTAVE-on: # adjust Octave version in SConscript (python styled os.environ['OCTAVE_VERSION'] somehow doesn't work for this) @${REINPLACE_CMD} -e "s|, 'bin', 'glnx.*')|, 'lib', 'octave', '${OCTAVE_VERSION}')|" ${WRKSRC}/src/matlab/SConscript post-install-OCTAVE-on: # adjust .mex file name @${MV} \ ${STAGEDIR}${PREFIX}/lib/cantera/matlab/toolbox/ctmethods.mexa64 \ ${STAGEDIR}${PREFIX}/lib/cantera/matlab/toolbox/ctmethods.mex .include diff --git a/science/dftbplus/Makefile b/science/dftbplus/Makefile index 9b30895f40ce..e7978e954d5e 100644 --- a/science/dftbplus/Makefile +++ b/science/dftbplus/Makefile @@ -1,110 +1,110 @@ PORTNAME= dftbplus DISTVERSION= 24.1 PORTREVISION= 8 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= DFTB+: Package for performing fast atomistic simulations WWW= https://dftbplus.org/ LICENSE= GPLv3 # main code is under LGPL3+, the bundled dftd3-lib is under GPLv1+, this makes the result GPLv3 (based on https://www.gnu.org/licenses/gpl-faq.html#AllCompatibility) BROKEN_aarch64= Lack of IEEE754 support in gcc causes "Cannot find an intrinsic module named 'ieee_arithmetic'", see bug\#255890 LIB_DEPENDS= libblas.so:math/blas \ liblapack.so:math/lapack \ libopenblas.so:math/openblas -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= bash:shells/bash USES= cmake compiler:gcc-c++11-lib fortran pkgconfig python:build shebangfix USE_LDCONFIG= yes SHEBANG_FILES= tools/dptools/bin/* tools/misc/* utils/srcmanip/* utils/build/* external/fypp/bin/* utils/get_opt_externals \ external/fypp/bin/fypp utils/test/testlist_to_fypp SHEBANG_GLOB= *.py *.sh USE_GITHUB= yes GH_TUPLE= \ aradi:fytest:94e05ac:aradi_fytest/external/fytest/origin \ dftbplus:testparams:cd7536f:testparams/external/slakos/origin \ dftd4:dftd4:056491b:dftd4_dftd4/external/dftd4/origin TEST_TARGET= test BINARY_ALIAS= git=false CMAKE_ON= BLAS_DETECTION BUILD_SHARED_LIBS WITH_API ENABLE_DYNAMIC_LOADING CMAKE_ARGS= -DLAPACK_LIBRARY=lapack -DSCALAPACK_LIBRARY=scalapack BINARY_ALIAS= git=false python=${PYTHON_CMD} python3=${PYTHON_CMD} OPTIONS_DEFINE= ARPACK CHIMES DFTD3 MBD MPIX PLUMED POISSON PYTHON SOCKETS TBLITE TRANSPORT # see config.cmake for a complete list OPTIONS_DEFAULT= CHIMES DFTD3 MBD MPIX PLUMED POISSON TRANSPORT SOCKETS # PYTHON TBLITE OPTIONS_SUB= yes ARPACK_DESC= Build with ARPACK for large eigenvalue problems ARPACK_CMAKE_BOOL= WITH_ARPACK ARPACK_LIB_DEPENDS= libarpack.so:math/arpack-ng@mpich ARPACK_PREVENTS= MPIX # ARPACK is only used in a single-core application CHIMES_DESC= Build with ChIMES CHIMES_CMAKE_BOOL= WITH_CHIMES CHIMES_LIB_DEPENDS= libchimescalc.so:science/chimes-calculator DFTD3_DESC= Build with s-dft3 DFTD3_CMAKE_BOOL= WITH_SDFTD3 DFTD3_LIB_DEPENDS= libs-dftd3.so:science/simple-dftd3 \ libmctc-lib.so:science/mctc-lib \ libmstore.so:science/mstore \ libtoml-f.so:textproc/toml-f # binaries not linked with libtoml-f.so, see https://github.com/dftbplus/dftbplus/issues/1040 MBD_DESC= Build with many-body-dispersion support MBD_CMAKE_BOOL= WITH_MBD MBD_LIB_DEPENDS= libmbd.so:science/libmbd MPIX_DESC= MPI (Message Passing Interface) support # the MPI option name causes failure in MPI_USES=mpi:openmpi MPIX_CMAKE_BOOL= WITH_MPI MPIX_USES= mpi:mpich MPIX_LIB_DEPENDS= libmpich.so:net/mpich \ libmpifx.so:net/mpifx \ libscalapack.so:math/scalapack \ libscalapackfx.so:math/scalapackfx MPIX_LDFLAGS= ${LOCALBASE}/lib/libmpich.so ${LOCALBASE}/lib/libmpifort.so ${LOCALBASE}/lib/libmpi.so PLUMED_DESC= Do metadynamics via the PLUMED2 library PLUMED_CMAKE_BOOL= WITH_PLUMED PLUMED_LIB_DEPENDS= libplumed.so:science/plumed POISSON_DESC= Include Poisson-solver POISSON_CMAKE_BOOL= WITH_POISSON PYTHON_USES= python PYTHON_CMAKE_BOOL= WITH_PYTHON PYTHON_BROKEN= fails to install into stage directory: https://github.com/dftbplus/dftbplus/issues/931 SOCKETS_DESC= Build with sockets library SOCKETS_CMAKE_BOOL= WITH_SOCKETS SOCKETS_BINARY_ALIAS= gcc=${CC} TBLITE_DESC= Include xTB support via tblite TBLITE_CMAKE_BOOL= WITH_TBLITE TBLITE_BROKEN= fails to build, see https://github.com/dftbplus/dftbplus/issues/1041 TRANSPORT_DESC= Transport via libNEGF TRANSPORT_CMAKE_BOOL= WITH_TRANSPORT TRANSPORT_LIB_DEPENDS= libnegf.so:science/libnegf \ libmpi.so:net/mpich \ libmpifx.so:net/mpifx .include .if ${GCC_DEFAULT} >= 10 # workaround for Type mismatch between actual argument at (1) and actual argument at (2) (COMPLEX(8)/CHARACTER(*)). # in theory, this should set FCFLAGS, but the port does not conform FFLAGS+= -fallow-argument-mismatch .endif # 5 tests fail, see https://github.com/dftbplus/dftbplus/issues/1474 .include diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index 8275fc27a564..53e21c08c2a8 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -1,131 +1,131 @@ PORTNAME= gnudatalanguage PORTVERSION= 1.1.3 DISTVERSIONPREFIX= v PORTREVISION= 2 CATEGORIES= science lang MASTER_SITES= https://github.com/${PORTNAME}/gdl/releases/download/v${PORTVERSION}/ .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} .endif DISTNAME= gdl-${DISTVERSIONPREFIX}${PORTVERSION} MAINTAINER= thierry@FreeBSD.org COMMENT?= Free IDL-compatible incremental compiler WWW= https://github.com/gnudatalanguage/gdl LICENSE= GPLv2 LIB_DEPENDS+= libGraphicsMagick.so:graphics/GraphicsMagick \ libgeotiff.so:graphics/libgeotiff \ libfreetype.so:print/freetype2 \ libexpat.so:textproc/expat2 \ libplplot.so:math/plplot \ libtiff.so:graphics/tiff \ libhpdf.so:print/libharu \ libshp.so:devel/shapelib \ libpng.so:graphics/png \ libsz.so:science/libaec \ libglpk.so:math/glpk \ libps.so:print/pslib \ libgsl.so:math/gsl #USE_GITHUB= yes #GH_PROJECT= gdl USES= cmake compiler:c++11-lang fortran ncurses pkgconfig readline \ xorg USE_WX= 3.0+ USE_XORG= x11 sm ice xext # Disable ncurses and readline from ports # TODO: create a port for Astron http://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz CMAKE_ARGS= -DREADLINEDIR:STRING="/usr" \ -DOPENMP:BOOL=ON \ -DNCURSESDIR:STRING="/usr" \ -DGRAPHICSMAGICK:BOOL=YES \ -DX11:BOOL=ON CPPFLAGS+= ${CFLAGS} -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION CXXFLAGS+= -std=gnu++11 LDFLAGS+= -lpthread -L${LOCALBASE}/lib TEST_TARGET= test SLAVEDIRS= science/py-gnudatalanguage # Upstream prefer GraphicsMagick over ImageMackick # see https://github.com/gnudatalanguage/gdl/issues/611 # and https://github.com/gnudatalanguage/gdl/issues/1044 for ImageMagick 7 OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GRIB HDF5 LIBPROJ4 \ MPICH NETCDF PYTHON QHULL UDUNITS OPTIONS_DEFAULT=EIGEN FFTW GRIB HDF5 LIBPROJ4 NETCDF PYTHON \ QHULL UDUNITS EIGEN_DESC= Eigen3 support (boost performance) EIGEN_USES= eigen:3 EIGEN_CMAKE_ON= -DEIGEN3:BOOL=YES EIGEN_CMAKE_OFF= -DEIGEN3:BOOL=NO FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float FFTW_CMAKE_ON= -DFFTW:BOOL=YES FFTW_CMAKE_OFF= -DFFTW:BOOL=NO GRIB_DESC= Support GRIB messages GRIB_LIB_DEPENDS= libeccodes.so:science/eccodes GRIB_CMAKE_ON= -DGRIB:BOOL=YES GRIB_CMAKE_OFF= -DGRIB:BOOL=NO HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DHDF5:BOOL=YES HDF5_CMAKE_OFF= -DHDF5:BOOL=NO -DHDF:BOOL=NO LIBPROJ4_DESC= Support cartographic processes LIBPROJ4_LIB_DEPENDS= libproj.so:graphics/proj LIBPROJ4_CMAKE_ON= -DLIBPROJ:BOOL=YES LIBPROJ4_CMAKE_OFF= -DLIBPROJ:BOOL=NO MPICH_USES= mpi MPICH_CMAKE_ON= -DMPI:BOOL=ON -DMPIDIR:PATH=${MPI_HOME} MPICH_CMAKE_OFF= -DMPI:BOOL=OFF -DMPIDIR=/none NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO PYTHON_USES= python -PYTHON_BUILD_DEPENDS= ${PYNUMPY} -PYTHON_RUN_DEPENDS= ${PYNUMPY} \ +PYTHON_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}" PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO QHULL_DESC= Enable Triangulate and Qhull support QHULL_LIB_DEPENDS= libqhull_r.so:math/qhull QHULL_CMAKE_ON= -DQHULL:BOOL=YES QHULL_CMAKE_OFF= -DQHULL:BOOL=NO UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UDUNITS_CMAKE_ON= -DUDUNITS2:BOOL=YES UDUNITS_CMAKE_OFF= -DUDUNITS2:BOOL=NO .if defined(BUILD_PYTHON_MODULE) CATEGORIES+= python CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=YES PLIST= ${.CURDIR}/pkg-plist.pymod .else CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=NO .endif .if defined(BUILD_PYTHON_MODULE) do-install: ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${INSTALL_DATA} ${INSTALL_WRKSRC}/src/GDL.so ${STAGEDIR}${PYTHON_SITELIBDIR}/ .endif .if !defined(BUILD_PYTHON_MODULE) post-install: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/testsuite (cd ${WRKSRC}/testsuite && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}/testsuite/) .endif .include diff --git a/science/libcint/Makefile b/science/libcint/Makefile index 030c5de31ee3..7556cf970ab9 100644 --- a/science/libcint/Makefile +++ b/science/libcint/Makefile @@ -1,43 +1,43 @@ PORTNAME= libcint DISTVERSIONPREFIX= v DISTVERSION= 6.1.3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= General GTO integrals for quantum chemistry WWW= https://github.com/sunqm/libcint LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyscf>0:science/py-pyscf@${PY_FLAVOR} USES= cmake blaslapack:openblas python:test USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= sunqm PLIST_FILES= include/cint.h \ include/cint_funcs.h \ lib/libcint.so \ lib/libcint.so.${PORTVERSION:R:R} \ lib/libcint.so.${PORTVERSION} #lib/libcint.so.${PORTVERSION} post-patch: @${REINPLACE_CMD} -e "s|\\.\\./\\.\\./build/libcint\\.so|${BUILD_WRKSRC}/libcint.so|" \ ${WRKSRC}/testsuite/test_3c2e.py @${REINPLACE_CMD} -e "s|os\\.path\\.abspath(os\\.path\\.join(__file__, '\\.\\./\\.\\./build/libcint\\.so'))|'${BUILD_WRKSRC}/libcint.so'|" \ ${WRKSRC}/testsuite/test_cint.py do-test: # needs science/py-pyscf, pending https://github.com/pyscf/pyscf/issues/935 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DENABLE_TEST:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test # tests as of 6.1.3: 100% tests passed, 0 tests failed out of 2 .include diff --git a/science/meep/Makefile b/science/meep/Makefile index 9161e5db1bb6..5e5323afe874 100644 --- a/science/meep/Makefile +++ b/science/meep/Makefile @@ -1,66 +1,66 @@ PORTNAME= meep DISTVERSIONPREFIX= v DISTVERSION= 1.29.0 PORTREVISION= 10 CATEGORIES= science cad MAINTAINER= yuri@FreeBSD.org COMMENT= Finite-difference time-domain software for electromagnetic simulations WWW= https://github.com/NanoComp/meep LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${LOCALBASE}/lib/libharminv.a:science/harminv LIB_DEPENDS= libblas.so:math/blas \ libctlgeom.so:science/libctl \ libfftw3.so:math/fftw3 \ libGDSII.so:cad/libgdsii \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ liblapack.so:math/lapack \ libmpb.so:science/mpb \ libopenblas.so:math/openblas RUN_DEPENDS= ${LOCALBASE}/lib/libharminv.a:science/harminv USES= autoreconf compiler:c++11-lang fortran gmake libtool localbase USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= NanoComp GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-scheme CXXFLAGS_i386= -msse2 # to fix this error: '_mm_getcsr' needs target feature sse INSTALL_TARGET= install-strip TEST_TARGET= check # some python binding's tests fail due to bug#270105 (in needed dependency science/mpb) and https://github.com/NanoComp/meep/issues/2434 BINARY_ALIAS= make=${GMAKE} OPTIONS_DEFINE= PYTHON OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes PYTHON_CONFIGURE_WITH= python PYTHON_CONFIGURE_ENABLE= maintainer-mode PYTHON_USES= python PYTHON_BINARY_ALIAS= swig=swig40 PYTHON_BUILD_DEPENDS= swig40:devel/swig40 PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}autograd>0:math/py-autograd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jax>0:math/py-jax@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyter-rfb>0:devel/py-jupyter-rfb@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}vispy>0:graphics/py-vispy@${PY_FLAVOR} PYTHON_TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jax>0:math/py-jax@${PY_FLAVOR} # 2 python tests fail because the py-jaxlib test dependency is missing .include diff --git a/science/mopac/Makefile b/science/mopac/Makefile index 4793323e925b..4582fd80ce4c 100644 --- a/science/mopac/Makefile +++ b/science/mopac/Makefile @@ -1,37 +1,37 @@ PORTNAME= mopac DISTVERSIONPREFIX= v DISTVERSION= 23.2.2 PORTEPOCH= 1 CATEGORIES= science # chemistry MAINTAINER= yuri@FreeBSD.org COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation WWW= http://openmopac.net \ https://github.com/openmopac/mopac LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -TEST_DEPENDS= ${PYNUMPY} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= blaslapack:openblas cmake:testing fortran python:test USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= openmopac CMAKE_OFF= TESTS CMAKE_TESTING_ON= TESTS # all tests pass CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} #-DPython3_NumPy_INCLUDE_DIRS=${PYTHONPREFIX_SITELIBDIR}/numpy/core/include PLIST_FILES= bin/mopac \ bin/mopac-makpol \ bin/mopac-param \ include/mopac.h \ lib/libmopac.so \ lib/libmopac.so.2 # tests as of 23.1.2: 100% tests passed, 0 tests failed out of 125 # tests as of 23.2.2: 99% tests passed, 1 tests failed out of 125, see https://github.com/openmopac/mopac/issues/302 .include diff --git a/science/paraview/Makefile b/science/paraview/Makefile index 246230266768..df881960552a 100644 --- a/science/paraview/Makefile +++ b/science/paraview/Makefile @@ -1,184 +1,184 @@ PORTNAME= paraview DISTVERSION= ${PARAVIEW_VER}.1 PORTREVISION= 3 CATEGORIES= science graphics MASTER_SITES= http://www.paraview.org/files/v${PARAVIEW_VER}/ DISTNAME= ParaView-v${PORTVERSION} MAINTAINER= thierry@FreeBSD.org COMMENT= Powerful scientific data visualization application WWW= https://www.paraview.org/ # See https://www.paraview.org/license/ LICENSE= BSD3CLAUSE #BROKEN_i386= no matching member function for call to 'getArrayType' -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ cli11>0:devel/cli11 \ utf8cpp>0:devel/utf8cpp \ fast_float>0:math/fast_float \ nlohmann-json>0:devel/nlohmann-json \ vulkan-headers>0:graphics/vulkan-headers \ ${LOCALBASE}/include/exprtk.hpp:math/exprtk \ ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib@${PY_FLAVOR} LIB_DEPENDS= libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libfreetype.so:print/freetype2 \ libexpat.so:textproc/expat2 \ libjbig.so:graphics/jbigkit \ liborc-0.4.so:devel/orc \ libpcre.so:devel/pcre \ libicuuc.so:devel/icu \ libffi.so:devel/libffi \ libtbb.so:devel/onetbb \ libogg.so:audio/libogg \ libgl2ps.so:print/gl2ps \ libOT.so:math/openturns \ libgdal.so:graphics/gdal \ libgeos.so:graphics/geos \ libhpdf.so:print/libharu \ libproj.so:graphics/proj \ libpdalcpp.so:math/pdal \ libdrm.so:graphics/libdrm \ libcgns.so:science/cgnslib \ liblz4.so:archivers/liblz4 \ libverdict.so:math/verdict \ libnetcdf.so:science/netcdf \ libjsoncpp.so:devel/jsoncpp \ libprotobuf.so:devel/protobuf \ libpugixml.so:textproc/pugixml \ libavutil.so:multimedia/ffmpeg \ libcgraph.so:graphics/graphviz \ libxkbcommon.so:x11/libxkbcommon \ libtheora.so:multimedia/libtheora \ libgeotiff.so:graphics/libgeotiff \ libboost_thread.so:devel/boost-libs \ libfontconfig.so:x11-fonts/fontconfig \ libdouble-conversion.so:devel/double-conversion -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ bash:shells/bash \ vtk${VTK_VER:R}>0:math/vtk${VTK_VER:R} \ ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib@${PY_FLAVOR} USES= cmake compiler:c++17-lang desktop-file-utils eigen:3 fortran gl gnome \ jpeg localbase pkgconfig python qt:6 shebangfix sqlite tar:xz xorg USE_GL= glew opengl USE_GNOME= libxml2 USE_QT= 5compat base svg tools webengine #buildtools:build core gui help network opengl qmake:build sql svg \ # webengine widgets x11extras glew xmlpatterns USE_XORG= ice sm x11 xau xcb xcursor xdamage xdmcp xext xfixes xorgproto xrender \ xxf86vm USE_LDCONFIG= yes CFLAGS+= -Wno-missing-template-arg-list-after-template-kw \ -I${WRKSRC}/Clients/ParaView/Documentation CMAKE_ARGS+= -DPARAVIEW_BUILD_SHARED_LIBS=ON \ -DPARAVIEW_BUILD_WITH_EXTERNAL=ON \ -DCMAKE_CXX_STANDARD=17 \ -DPARAVIEW_USE_PYTHON:BOOL=ON \ -DPARAVIEW_ENABLE_FFMPEG:BOOL=ON \ -DPARAVIEW_ENABLE_LAS:BOOL=OFF \ -DPARAVIEW_ENABLE_WEB:BOOL=ON \ -DPARAVIEW_ENABLE_GDAL:BOOL=ON \ -DPARAVIEW_ENABLE_PDAL:BOOL=ON \ -DPARAVIEW_ENABLE_OPENTURNS:BOOL=ON \ -DPARAVIEW_ENABLE_MOTIONFX:BOOL=ON \ -DPARAVIEW_ENABLE_XDMF2:BOOL=ON \ -DPARAVIEW_ENABLE_XDMF3:BOOL=ON \ -DPARAVIEW_USE_QT:BOOL=ON \ -DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION:BOOL=OFF \ -DPARAVIEW_ENABLE_EMBEDDED_DOCUMENTATION:BOOL=OFF \ -DVTK_FORBID_DOWNLOADS:BOOL=OFF \ -DVTK_HAVE_GETSOCKNAME_WITH_SOCKLEN_T=1 \ -DVTK_MODULE_USE_EXTERNAL_VTK_fmt:BOOL=OFF \ -DVTK_MODULE_USE_EXTERNAL_VTK_ioss:BOOL=OFF \ -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl:BOOL=OFF \ -DVTK_MODULE_USE_EXTERNAL_VTK_token:BOOL=OFF \ -DExternalData_OBJECT_STORES="${WRKDIR}/VTK/ExternalData/MD5" \ -DFREETYPE_INCLUDE_DIRS="${LOCALBASE}/include/freetype2" # TODO: port Viskores - https://viskores.org/ CMAKE_ARGS+= -DPARAVIEW_USE_VISKORES:BOOL=OFF # To enable external VTK, it should be configured with several modules # -DVTK_MODULE_ENABLE_VTK_xxx=WANT CMAKE_ARGS+= -DPARAVIEW_USE_EXTERNAL_VTK:BOOL=OFF .if !defined(MAINTAINER_MODE) CMAKE_ARGS+= -DVTK_FORBID_DOWNLOADS:BOOL=ON .endif MAKE_ENV= XDG_CONFIG_HOME=${WRKDIR} USE_CXXSTD= c++17 SHEBANG_GLOB= *.py SHEBANG_FILES= VTK/Examples/SearchScript.sh \ VTK/Utilities/Maintenance/*.sh \ Clients/CommandLineExecutables/paraview-config.in OPTIONS_DEFINE= DOCS EXAMPLES OMPI OSMESA TEST OPTIONS_SUB= yes OMPI_DESC= OpenMPI (Message Passing Interface) support OSMESA_DESC= Use Mesa for off-screen rendering # mpi4py and other programs must be compiled against the same MPI provider OMPI_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mpi4py>=0:net/py-mpi4py@${PY_FLAVOR} OMPI_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mpi4py>=0:net/py-mpi4py@${PY_FLAVOR} OMPI_USES= mpi:openmpi OMPI_CMAKE_ON= -DPARAVIEW_USE_MPI:BOOL=ON OMPI_CMAKE_OFF= -DPARAVIEW_USE_MPI:BOOL=OFF OSMESA_LIB_DEPENDS= libOSMesa.so:graphics/libosmesa OSMESA_USES_OFF= desktop-file-utils OSMESA_CMAKE_BOOL= VTK_OPENGL_HAS_OSMESA OSMESA_CMAKE_ON= -DVTK_USE_X:BOOL="OFF" \ -DOSMESA_INCLUDE_DIR:PATH=${LOCALBASE}/include/Mesa \ -DOSMESA_LIBRARY:FILEPATH=${LOCALBASE}/lib/libOSMesa.so OSMESA_CMAKE_OFF= -DVTK_USE_X:BOOL="ON" EXAMPLES_CMAKE_BOOL= PARAVIEW_ENABLE_EXAMPLES PORTEXAMPLES= * TEST_CMAKE_ON= -DPARAVIEW_BUILD_TESTING=WANT # PARAVIEW_BUILD_VTK_TESTING requires SCN https://pypi.org/project/scn/ # -DPARAVIEW_BUILD_VTK_TESTING=WANT # ADIOS2 requires MPICH, not OpenMPI #LIB_DEPENDS+= libadios2_c.so:misc/adios2 #CMAKE_ARGS+= -DPARAVIEW_ENABLE_ADIOS2:BOOL=ON # Missing GenericIO for CosmoTools #CMAKE_ARGS+= -DPARAVIEW_ENABLE_COSMOTOOLS:BOOL=ON # Errors with VisItBridge / VisItLib #CMAKE_ARGS+= -DPARAVIEW_ENABLE_VISITBRIDGE:BOOL=ON # MomentInvariants needs to download a module #CMAKE_ARGS+= -DPARAVIEW_ENABLE_MOMENTINVARIANTS:BOOL=ON # No package for graphics/ospray #LIB_DEPENDS+= libospray.so:graphics/ospray #CMAKE_ARGS+= -DPARAVIEW_ENABLE_RAYTRACING PLIST_SUB+= VERMAJORMINOR=${PARAVIEW_VER} VTK9_CONFLICTS= vtk.py vtkmodules/__init__.py vtkmodules/all.py \ vtkmodules/gtk vtkmodules/numpy_interface \ vtkmodules/qt vtkmodules/test vtkmodules/tk \ vtkmodules/util vtkmodules/wx vtkmodules/generate_pyi.py \ vtkmodules/web/errors.py pre-configure: ${REINPLACE_CMD} -e 's|png_set_gray_1_2_4_to_8|png_set_expand_gray_1_2_4_to_8|' \ ${PATCH_WRKSRC}/VTK/IO/Image/vtkPNGReader.cxx ${REINPLACE_CMD} -e 's|/bin/bash|${LOCALBASE}/bin/bash|' \ ${PATCH_WRKSRC}/VTK/Utilities/Maintenance/vtk_site_history.py post-install: # vtk9 is not a real run dependency, but it installs several common files .for py in ${VTK9_CONFLICTS} ${RM} -r ${STAGEDIR}${PYTHON_SITELIBDIR}/${py} .endfor post-install-EXAMPLES-on: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/Examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR} .include <./Makefile.version> .include <../../math/vtk9/Makefile.version> .include diff --git a/science/pastix/Makefile b/science/pastix/Makefile index 47f46e15b561..9be0a68d871e 100644 --- a/science/pastix/Makefile +++ b/science/pastix/Makefile @@ -1,59 +1,59 @@ PORTNAME= pastix PORTVERSION= 6.3.2 PORTREVISION= 3 CATEGORIES= science MASTER_SITES= https://gitlab.inria.fr/solverstack/pastix/uploads/${GL_TAG}/ MAINTAINER= thierry@FreeBSD.org COMMENT= PaStiX: a sparse direct solver WWW= https://solverstack.gitlabpages.inria.fr/pastix/ LICENSE= LGPL3 BUILD_DEPENDS= bash:shells/bash \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libmetis.so:math/metis \ libjulia.so:lang/julia \ libscotch.so:cad/scotch \ libhwloc.so:devel/hwloc2 RUN_DEPENDS= bash:shells/bash \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake blaslapack:openblas fortran pkgconfig python #USE_GITLAB= yes #GL_SITE= https://gitlab.inria.fr/ #GL_ACCOUNT= solverstack #GL_PROJECT= pastix spm:s morse_cmake:m #GL_TAGNAME= 6e35c2ba179013b058f5d4e1afd4b451953149c6 \ # 14e36c1586c9ba13f938b1a89f51c080d6551392:s \ # 31cd2bbb0d76f2b9fd83011d8f079d97540b0ba8:m #GL_SUBDIR= spm:s cmake_modules/morse_cmake:m GL_TAG= 32711239db22edb6c291282b581b9e0b # tarball with submodules LDFLAGS+= -lm CMAKE_ARGS= -DBUILD_SHARED_LIBS:BOOL=ON \ -DPASTIX_ORDERING_METIS:BOOL=ON \ -DPython_VERSION_MAJOR=${PYTHON_MAJOR_VER} \ -DPython_VERSION_MINOR=${PYTHON_VER:E} USE_LDCONFIG= yes TEST_TARGET= test PLIST_SUB= VER=${PORTVERSION} OPTIONS_DEFINE= EXAMPLES EX2FIX= spm/examples spm/wrappers/fortran90 spm/wrappers/python EX2FIX2= example example/old wrappers/julia wrappers/fortran90 wrappers/python pre-configure: .for ex in ${EX2FIX} ${REINPLACE_CMD} -e 's|DESTINATION examples|DESTINATION ${EXAMPLESDIR}/${ex:C/examples//:C/example//}|' \ -e 's|share/doc/spm/examples|${EXAMPLESDIR}/spm|' \ ${WRKSRC}/${ex}/CMakeLists.txt .endfor .for ex in ${EX2FIX2} ${REINPLACE_CMD} -e 's|share/doc/pastix/examples|share/examples/pastix|' \ ${WRKSRC}/${ex}/CMakeLists.txt .endfor .include diff --git a/science/precice/Makefile b/science/precice/Makefile index d25cd5cf9929..041b46bbcb69 100644 --- a/science/precice/Makefile +++ b/science/precice/Makefile @@ -1,50 +1,50 @@ PORTNAME= precice DISTVERSIONPREFIX= v DISTVERSION= 3.1.2 PORTREVISION= 4 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org COMMENT= Coupling library for partitioned multi-physics simulations WWW= https://precice.org/ LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN= fails to build with Boost>=1.87 -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libmpicxx.so:net/mpich -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:noninja,testing compiler:c++14-lang eigen:3 gnome pkgconfig python shebangfix # fails with ninja: phony target 'binprecice' names itself as an input; ignoring USE_GNOME= libxml2 USE_LDCONFIG= yes USE_GITHUB= yes SHEBANG_FILES= tools/profiling/precice-profiling CMAKE_OFF= BUILD_TESTING PRECICE_ENABLE_FORTRAN PRECICE_PythonActions OPTIONS_DEFINE= MPI PETSC EXAMPLES MPI_CMAKE_BOOL= PRECICE_MPICommunication MPI_BUILD_DEPENDS= openmpi>0:net/openmpi MPI_RUN_DEPENDS= openmpi>0:net/openmpi MPI_BROKEN= all tests crash with MPI, see https://github.com/precice/precice/issues/1331 PETSC_DESC= Use PETSc linear algebra library PETSC_CMAKE_BOOL= PRECICE_FEATURE_PETSC_MAPPING PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc PETSC_IMPLIES= MPI PORTEXAMPLES= * # 3 tests time out, see https://github.com/precice/precice/issues/1331 post-install: # remove files which aren't docs @${RM} -r ${STAGEDIR}${PREFIX}/share/doc .include diff --git a/science/py-GPy/Makefile b/science/py-GPy/Makefile index bb89cc77fe45..f2d8f3ce0a22 100644 --- a/science/py-GPy/Makefile +++ b/science/py-GPy/Makefile @@ -1,40 +1,40 @@ PORTNAME= GPy DISTVERSION= 1.13.2 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Gaussian process toolbox WWW= https://sheffieldml.github.io/GPy/ \ https://github.com/SheffieldML/GPy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt .if !exists(/usr/include/omp.h) BROKEN= requires OpenMP support that is missing on this architecture .endif -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}paramz>=0.9.6:science/py-paramz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR} USES= localbase python USE_PYTHON= distutils autoplist pytest # 12 tests fail see https://github.com/SheffieldML/GPy/issues/1075 POST_PLIST= fix-plist post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/GPy/*/*${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/GPy/*/*/*${PYTHON_TAG}.so fix-plist: # workaroud for /usr/ports/science/py-GPy/work-py311/.PLIST.mktmp @${REINPLACE_CMD} -e "s|.*__pycache__/mpi_test__.*$$||" ${TMPPLIST} .include diff --git a/science/py-GPyOpt/Makefile b/science/py-GPyOpt/Makefile index 8fb425a14826..1d54637749cd 100644 --- a/science/py-GPyOpt/Makefile +++ b/science/py-GPyOpt/Makefile @@ -1,25 +1,25 @@ PORTNAME= GPyOpt # the upstream repository was archived but this packages seems to be ok and is useful DISTVERSION= 1.2.6 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Bayesian optimization toolbox based on GPy WWW= https://sheffieldml.github.io/GPyOpt/ \ https://github.com/SheffieldML/GPyOpt LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.16:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}GPy>=1.8:science/py-GPy@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/science/py-MDAnalysis/Makefile b/science/py-MDAnalysis/Makefile index a381496e9960..fc5924e5d5ee 100644 --- a/science/py-MDAnalysis/Makefile +++ b/science/py-MDAnalysis/Makefile @@ -1,40 +1,40 @@ PORTNAME= MDAnalysis DISTVERSION= 2.7.0 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python library to analyze molecular dynamics trajectories WWW= https://www.mdanalysis.org LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=2.0:devel/py-packaging@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ clustalw2:biology/clustalw \ rdkit>0:science/rdkit \ ${PYTHON_PKGNAMEPREFIX}biopython>=1.71:biology/py-biopython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataFormats@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fasteners>0:devel/py-fasteners@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gsd>=1.9.3:science/py-gsd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mmtf-python>=1.0.0:science/py-mmtf-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.5.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}seaborn>0:math/py-seaborn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.4.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.43.0:misc/py-tqdm@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= distutils cython autoplist .if !defined(WITH_DEBUG) LDFLAGS+= -s .endif .include diff --git a/science/py-MDAnalysisTests/Makefile b/science/py-MDAnalysisTests/Makefile index f62458a01906..d29cf5c94e6e 100644 --- a/science/py-MDAnalysisTests/Makefile +++ b/science/py-MDAnalysisTests/Makefile @@ -1,23 +1,23 @@ PORTNAME= MDAnalysisTests DISTVERSION= 2.7.0 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Test code and the trajectory data for test cases of MDAnalysis WWW= https://www.mdanalysis.org LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}MDAnalysis>0:science/py-MDAnalysis@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes .include diff --git a/science/py-OpenFermion/Makefile b/science/py-OpenFermion/Makefile index 4c805a94ad0f..0d7ae09cd963 100644 --- a/science/py-OpenFermion/Makefile +++ b/science/py-OpenFermion/Makefile @@ -1,39 +1,39 @@ PORTNAME= OpenFermion DISTVERSIONPREFIX= v DISTVERSION= 1.7.1 PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Electronic structure package for quantum computers WWW= https://github.com/quantumlib/OpenFermion LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cirq-core>=1.0:science/py-cirq-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cirq-google>=0.15.0:science/py-cirq-google@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}deprecation>0:devel/py-deprecation@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.8:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PubChemPy>0:science/py-PubChemPy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.18:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # 1 tests fails, see https://github.com/quantumlib/OpenFermion/issues/879 USE_GITHUB= yes GH_ACCOUNT= quantumlib NO_ARCH= yes BINARY_ALIAS= python3=${PYTHON_CMD} # only for tests # tests as of 1.7.1: 2 failed, 2157 passed, 60 skipped, 218 warnings in 3296.13s (0:54:56) .include diff --git a/science/py-OpenMC/Makefile b/science/py-OpenMC/Makefile index a13e6abab86a..dbf2725f8f09 100644 --- a/science/py-OpenMC/Makefile +++ b/science/py-OpenMC/Makefile @@ -1,51 +1,51 @@ PORTNAME= OpenMC DISTVERSIONPREFIX= v DISTVERSION= 0.15.0 PORTREVISION= 5 CATEGORIES= science PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Monte Carlo neutron and photon transport simulation code (Python) WWW= https://openmc.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uncertainties>0:math/py-uncertainties@${PY_FLAVOR} BUILD_DEPENDS= openmc>0:science/openmc \ ${PY_DEPENDS} RUN_DEPENDS= openmc>0:science/openmc \ ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython concurrent autoplist pytest # tests fail and abort in the middle, see https://github.com/openmc-dev/openmc/issues/2186 USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl}-dev GH_PROJECT= ${PORTNAME:tl} PLIST_FILES= ${PYTHON_SITELIBDIR}/openmc/lib/libopenmc.so TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: # strip @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/openmc/data/*.so # link the library @${LN} -s ${LOCALBASE}/lib/libopenmc.so ${STAGEDIR}${PYTHON_SITELIBDIR}/openmc/lib/libopenmc.so pre-test: # link the library @if ! [ -e ${WRKSRC}/openmc/lib/libopenmc.so ]; then ${LN} -s ${LOCALBASE}/lib/libopenmc.so ${WRKSRC}/openmc/lib/libopenmc.so; fi # Some tests fail with the message: RuntimeError: No cross_sections.xml file was specified in materials.xml or in the OPENMC_CROSS_SECTIONS environment variable, see https://github.com/openmc-dev/openmc/issues/3053 .include diff --git a/science/py-PyFR/Makefile b/science/py-PyFR/Makefile index e606e1717bac..0d649294863d 100644 --- a/science/py-PyFR/Makefile +++ b/science/py-PyFR/Makefile @@ -1,55 +1,55 @@ PORTNAME= PyFR DISTVERSION= 3.1 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= pyfr-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Framework for solving advection-diffusion type problems WWW= https://www.pyfr.org/ \ https://github.com/PyFR/PyFR LICENSE= BSD3CLAUSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>=1.4.0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gimmik>=3.2.1:math/py-gimmik@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.10:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>=1.0.0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpi4py>=3.1.0:net/py-mpi4py@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}platformdirs>=2.2.0:devel/py-platformdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytools>=2016.2.1:devel/py-pytools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rtree>=1.0.1:devel/py-rtree@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= distutils concurrent autoplist pytest SHEBANG_FILES= setup.py pyfr/__main__.py NO_ARCH= yes TEST_WRKSRC= ${WRKSRC}/pyfr/tests OPTIONS_MULTI= PARALLEL OPTIONS_MULTI_PARALLEL= OPENCL OPENMP # CUDA isn't supported on FreeBSD OPTIONS_DEFAULT= ${OPTIONS_MULTI_PARALLEL} PARALLEL_DESC= Parallelization backends to install OPENCL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyopencl>0:devel/py-pyopencl@${PY_FLAVOR} \ clblas>0:math/clblas OPENMP_RUN_DEPENDS= libxsmm>0:math/libxsmm pre-build: # patch in pre-build to make the patch less error-prone (it has %%LOCALBASE%%) @${REINPLACE_CMD} 's|%%LOCALBASE%%|${LOCALBASE}|' ${WRKSRC}/pyfr/backends/openmp/compiler.py post-install: # workaround: https://groups.google.com/forum/#!topic/pyfrmailinglist/RNi_LcizGBo @${RM} ${STAGEDIR}${PREFIX}/__main__.py @${REINPLACE_CMD} 's|^${PREFIX}/__main__\.py||' ${_PYTHONPKGLIST} # tests as of 3.1: # Results (0.66s): # 3 passed .include diff --git a/science/py-PyNE/Makefile b/science/py-PyNE/Makefile index 391126e6c6e9..2cf5df597910 100644 --- a/science/py-PyNE/Makefile +++ b/science/py-PyNE/Makefile @@ -1,88 +1,88 @@ PORTNAME= PyNE DISTVERSION= 0.7.8 PORTREVISION= 5 CATEGORIES= science # physics MASTER_SITES= https://raw.githubusercontent.com/pyne/data/master/:decay \ https://raw.githubusercontent.com/pyne/data/master/:cram \ https://raw.githubusercontent.com/pyne/data/master/:dlc \ https://raw.githubusercontent.com/pyne/data/master/:clc \ https://raw.githubusercontent.com/pyne/data/master/:nuc_data PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= decay.tar.gz:decay \ cram.tar.gz:cram \ decay-linux-clang.tar.gz:dlc \ cram-linux-clang.tar.gz:clc \ prebuilt_nuc_data.h5:nuc_data DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} EXTRACT_ONLY= ${DISTNAME}.tar.gz MAINTAINER= yuri@FreeBSD.org COMMENT= PyNE: The Nuclear Engineering Toolkit WWW= https://pyne.io/ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt BROKEN_armv7= clang runs out of memory PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}progress>0:devel/py-progress@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=0:devel/py-pyyaml@${PY_FLAVOR} # the dependency list is only in ubuntu.sh, see https://github.com/pyne/pyne/issues/1518 PY_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}OpenMC>0:science/py-OpenMC@${PY_FLAVOR} BUILD_DEPENDS= cmake:devel/cmake-core \ ${PY_DEPENDS} LIB_DEPENDS= libhdf5.so:science/hdf5 \ libMOAB.so:math/moab RUN_DEPENDS= ${PY_DEPENDS} USES= compiler:c++17-lang fortran python USE_PYTHON= distutils cython flavors USE_GITHUB= yes GH_ACCOUNT= pyne GH_PROJECT= pyne MAKE_ENV= DESTDIR=${STAGEDIR} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} FFLAGS+= -fallow-argument-mismatch # all arguments are described here: http://pyne.io/install/source.html#source PY_EXTRA_ARGS= --slow # this chooses slow compilation of sources from {decay,cram}.tar.gz # over incompatible pre-compiled assembly from {decay,cram}-linux-clang.tar.gz PY_EXTRA_ARGS+= ${_MAKE_JOBS} PY_EXTRA_ARGS+= --hdf5 ${LOCALBASE} PY_EXTRA_ARGS+= --moab ${LOCALBASE} PYDISTUTILS_CONFIGUREARGS= ${PY_EXTRA_ARGS} PYDISTUTILS_BUILDARGS= ${PY_EXTRA_ARGS} BINARY_ALIAS= python=${PYTHON_CMD} post-extract: .for f in decay.tar.gz cram.tar.gz decay-linux-clang.tar.gz cram-linux-clang.tar.gz @${CP} ${DISTDIR}/${DIST_SUBDIR}/${f} ${WRKSRC}/src .endfor do-install: # install project cd ${INSTALL_WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_INSTALL_TARGET} # also install nuc_data.h5 because it is referred to in the code and is required by Jupyter notebooks ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/prebuilt_nuc_data.h5 ${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/nuc_data.h5 # remove stray files ${RM} ${STAGEDIR}${PREFIX}/bin/ubuntu.sh # strip ${STRIP_CMD} \ ${STAGEDIR}${LOCALBASE}/lib/lib*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/xs/models.so # CAVEAT: due to the failure to find MOAB-5.5.1 the file pyne/source_sampling.so isn't built, and is removed from plist # - see https://github.com/pyne/pyne/issues/1537 .include diff --git a/science/py-SimpleSpectral/Makefile b/science/py-SimpleSpectral/Makefile index 55a6e5b1ff56..ffaaedbdf45f 100644 --- a/science/py-SimpleSpectral/Makefile +++ b/science/py-SimpleSpectral/Makefile @@ -1,21 +1,21 @@ PORTNAME= SimpleSpectral DISTVERSION= 1.0.0 PORTREVISION= 5 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Simplified scipy.signal.spectral module with only pyFFTW support WWW= https://github.com/xmikos/simplespectral LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/science/py-abipy/Makefile b/science/py-abipy/Makefile index 9db250fd7a81..15ef1d3eb84e 100644 --- a/science/py-abipy/Makefile +++ b/science/py-abipy/Makefile @@ -1,48 +1,48 @@ PORTNAME= abipy DISTVERSION= 0.9.8 PORTREVISION= 4 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for analyzing the results produced by ABINIT WWW= https://abinit.github.io/abipy/ \ https://github.com/abinit/abipy LICENSE= GPLv2 RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}APScheduler>0:devel/py-apscheduler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}chart-studio>0:graphics/py-chart-studio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}monty>0:devel/py-monty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>0:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>0:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydispatcher>=2.0.5:devel/py-pydispatcher@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymatgen>=2022.0.14:science/py-pymatgen@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}seaborn>0:math/py-seaborn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=3.11:devel/py-pyyaml@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= distutils concurrent autoplist USE_GITHUB= yes GH_ACCOUNT= abinit SHEBANG_GLOB= *.py NO_ARCH= yes .include diff --git a/science/py-arbor/Makefile b/science/py-arbor/Makefile index 8e48a4c4c3c5..5fead274bc14 100644 --- a/science/py-arbor/Makefile +++ b/science/py-arbor/Makefile @@ -1,52 +1,52 @@ PORTNAME= arbor DISTVERSIONPREFIX= v DISTVERSION= 0.11.0 PORTREVISION= 1 CATEGORIES= science PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Multi-compartment neural network simulation library WWW= https://arbor-sim.org/ \ https://github.com/arbor-sim/arbor/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/../LICENSE BUILD_DEPENDS= gmake:devel/gmake \ pybind11>0:devel/pybind11 \ nlohmann-json>0:devel/nlohmann-json LIB_DEPENDS= libarbor.so:science/arbor -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake compiler:c++17-lang localbase:ldflags python USE_PYTHON= flavors unittest # tests fail to run, see https://github.com/arbor-sim/arbor/issues/2395 USE_GITHUB= yes GH_ACCOUNT= arbor-sim WRKSRC_SUBDIR= python CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} \ -DARB_PYTHON_LIB_PATH=${PYTHONPREFIX_SITELIBDIR} CXXFLAGS+= -fPIC CXXFLAGS+= -D_LIBCPP_HARDENING_MODE=_LIBCPP_HARDENING_MODE_NONE # prevent hardening issues with libc++, see https://github.com/arbor-sim/arbor/issues/2484 TEST_WRKSRC= ${WRKSRC}/test/unit_distributed TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} BINARY_ALIAS= make=${GMAKE} post-patch: @${ECHO} ${DISTVERSION} > ${WRKSRC}/VERSION post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/arbor/_arbor${PYTHON_TAG}.so do-test: # tests fail to run due to a bug with nadling complex CXXFLAGS in the test runner, see https://github.com/arbor-sim/arbor/issues/2395 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -munittest discover -v -s ${WRKSRC} .include diff --git a/science/py-arch/Makefile b/science/py-arch/Makefile index 86a39761607e..ba88f5cb0c9c 100644 --- a/science/py-arch/Makefile +++ b/science/py-arch/Makefile @@ -1,37 +1,37 @@ PORTNAME= arch DISTVERSION= 6.3.0 PORTREVISION= 1 CATEGORIES= science finance python # economics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Autoregressive Conditional Heteroskedasticity (ARCH) models WWW= https://github.com/bashtage/arch LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.md -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=1.1:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}property-cached>=1.6.4:devel/py-property-cached@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.5:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.12:math/py-statsmodels@${PY_FLAVOR} BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/bashtage/arch/issues/668 TEST_WRKSRC= ${WRKSRC}/arch/tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/arch/bootstrap/_samplers${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/arch/univariate/recursions${PYTHON_TAG}.so .include diff --git a/science/py-asap3/Makefile b/science/py-asap3/Makefile index 0b67866b0dad..b5e6bb08430f 100644 --- a/science/py-asap3/Makefile +++ b/science/py-asap3/Makefile @@ -1,31 +1,31 @@ PORTNAME= asap3 DISTVERSION= 3.13.11 PORTREVISION= 1 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Classical potentials for MD with ASE WWW= https://wiki.fysik.dtu.dk/asap LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libmpich.so:net/mpich # not sure if this is used -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ase>=3.24.0:science/py-ase@${PY_FLAVOR} USES= localbase python USE_PYTHON= distutils concurrent autoplist pytest post-patch: @${REINPLACE_CMD} -e "s/license = 'LGPL-3.0'/license = {text = 'LGPL-3.0'}/" \ -e "/^license-files/d" \ ${WRKSRC}/pyproject.toml post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_asap.cpython-${PYTHON_SUFFIX}.so .include diff --git a/science/py-ase/Makefile b/science/py-ase/Makefile index a8f81a71f644..afe8d7f8862e 100644 --- a/science/py-ase/Makefile +++ b/science/py-ase/Makefile @@ -1,35 +1,35 @@ PORTNAME= ase DISTVERSION= 3.26.0 PORTREVISION= 1 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Atomic simulation environment WWW= https://ase-lib.org/ \ https://gitlab.com/ase/ase LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.LESSER -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.1.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} # nwchem:science/nwchem TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>=1.30.0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}asap3>0:science/py-asap3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flask>0:www/py-flask@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR} # optional dependencies: x11-toolkits/py-tkinter, www/py-flask (see https://wiki.fysik.dtu.dk/ase/install.html) USES= python USE_PYTHON= distutils concurrent autoplist pytest NO_ARCH= yes # tests as of 3.26.0: 25 failed, 3036 passed, 538 skipped, 5 xfailed, 49 warnings, 10 errors in 2377.98s (0:39:37), see https://gitlab.com/ase/ase/-/issues/1746, https://gitlab.com/ase/ase/-/issues/1747 .include diff --git a/science/py-atomium/Makefile b/science/py-atomium/Makefile index 68b26c51660c..0dd6091dff6a 100644 --- a/science/py-atomium/Makefile +++ b/science/py-atomium/Makefile @@ -1,34 +1,34 @@ PORTNAME= atomium DISTVERSIONPREFIX= v DISTVERSION= 1.0.11 PORTREVISION= 5 CATEGORIES= science biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Molecular modeller and file parser WWW= https://atomium.bio/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coveralls>0:devel/py-coveralls@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}msgpack>=0.6.1:devel/py-msgpack@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}paramiko>0:security/py-paramiko@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rmsd>0:science/py-rmsd@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sphinx_rtd_theme>0:textproc/py-sphinx_rtd_theme@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}valerius>=0.2:biology/py-valerius@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= samirelanduk .include diff --git a/science/py-boutdata/Makefile b/science/py-boutdata/Makefile index 482c573f8f1c..ed92e7b9c2b6 100644 --- a/science/py-boutdata/Makefile +++ b/science/py-boutdata/Makefile @@ -1,38 +1,38 @@ PORTNAME= boutdata DISTVERSION= 0.4.0 PORTREVISION= 1 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python package for collecting BOUT++ data WWW= https://github.com/boutproject/boutdata LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>=8.1.0:devel/py-natsort@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.12.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.5.1:math/py-sympy@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.37.1:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes post-patch: @${REINPLACE_CMD} \ -e 's/license = "LGPL-3.0-or-later"/license = {text = "LGPL-3.0-or-later"}/' \ -e "/^license-files/d" \ ${WRKSRC}/pyproject.toml .include diff --git a/science/py-boututils/Makefile b/science/py-boututils/Makefile index d9582f172304..1d9a06a7b614 100644 --- a/science/py-boututils/Makefile +++ b/science/py-boututils/Makefile @@ -1,31 +1,31 @@ PORTNAME= boututils DISTVERSION= 0.2.1 PORTREVISION= 1 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python package containing BOUT++ utils WWW= https://github.com/boutproject/boututils LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.2.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}netCDF4>=1.5.3:science/py-netCDF4@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.4.1:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.37.1:devel/py-wheel@${PY_FLAVOR} \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}mayavi>0:graphics/py-mayavi@${PY_FLAVOR} # optional USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes .include diff --git a/science/py-chainer-chemistry/Makefile b/science/py-chainer-chemistry/Makefile index 04d74ed97f1b..957c2833e11e 100644 --- a/science/py-chainer-chemistry/Makefile +++ b/science/py-chainer-chemistry/Makefile @@ -1,28 +1,28 @@ PORTNAME= chainer-chemistry DISTVERSION= 0.7.1 PORTREVISION= 4 CATEGORIES= science biology # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for deep learning in biology and chemistry WWW= https://github.com/pfnet-research/chainer-chemistry LICENSE= MIT -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}chainer>=7.0.0:science/py-chainer@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/science/py-chainer/Makefile b/science/py-chainer/Makefile index 89d6915dc6d4..bb0543f92a37 100644 --- a/science/py-chainer/Makefile +++ b/science/py-chainer/Makefile @@ -1,26 +1,26 @@ PORTNAME= chainer DISTVERSION= 7.8.1 PORTREVISION= 15 CATEGORIES= science # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Deep learning framework WWW= https://chainer.org/ LICENSE= MIT LIB_DEPENDS= libprotobuf.so:devel/protobuf -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}filelock>0:sysutils/py-filelock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=3.0.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.9.0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist NO_ARCH= yes .include diff --git a/science/py-chempy/Makefile b/science/py-chempy/Makefile index ee41f452c44f..fbc8d0044061 100644 --- a/science/py-chempy/Makefile +++ b/science/py-chempy/Makefile @@ -1,54 +1,54 @@ PORTNAME= chempy DISTVERSION= 0.10.1 PORTREVISION= 3 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package useful for solving problems in chemistry WWW= https://github.com/bjodah/chempy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.3:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PuLP>=1.6.8:math/py-PuLP@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyneqsys>=0.5.7:math/py-pyneqsys@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyodesys>=0.14.1:math/py-pyodesys@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>=2.0.3:devel/py-pyparsing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}quantities>=0.12.1:science/py-quantities@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sym>=0.3.7:math/py-sym@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>0:devel/py-tabulate@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-flakes>0:devel/py-pytest-flakes@${PY_FLAVOR} \ gsl>0:math/gsl USES= localbase:ldflags python # localbase and math/gsl are only for tests USE_PYTHON= distutils autoplist pytest # 5 tests fail, see https://github.com/bjodah/chempy/issues/222 NO_ARCH= yes CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}pymol # https://github.com/schrodinger/pymol-open-source/issues/100 OPTIONS_DEFINE= EXTRAS OPTIONS_DEFAULT= EXTRAS EXTRAS_DESC= Install optional dependencies for additional functionality # this seems to be a copy of what extras pyodesys requires, see https://github.com/bjodah/chempy/issues/241 EXTRAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bokeh>=0.13.0:www/py-bokeh@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.3:devel/py-pycodeexport@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.12:devel/py-pycompilation@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.4:math/py-pygslodeiv2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.4:math/py-pyodeint@${PY_FLAVOR} # TODO pycvodes>=0.14.0, pykinsol>=0.1.6 .include diff --git a/science/py-cirq-core/Makefile b/science/py-cirq-core/Makefile index cfbb4119fa75..9d4d4b1d5bab 100644 --- a/science/py-cirq-core/Makefile +++ b/science/py-cirq-core/Makefile @@ -1,39 +1,39 @@ PORTNAME= cirq-core DISTVERSIONPREFIX= v DISTVERSION= 1.6.1 PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Framework for Noisy Intermediate Scale Quantum (NISQ) circuits WWW= https://github.com/quantumlib/cirq LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cirq-google>0:science/py-cirq-google@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}duet>=0.2.6:net/py-duet@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sortedcontainers>0:devel/py-sortedcontainers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist USE_GITHUB= yes GH_ACCOUNT= quantumlib GH_PROJECT= Cirq WRKSRC_SUBDIR= cirq-core NO_ARCH= yes .include diff --git a/science/py-dftd4/Makefile b/science/py-dftd4/Makefile index cf2608a561b5..68a23b74f487 100644 --- a/science/py-dftd4/Makefile +++ b/science/py-dftd4/Makefile @@ -1,29 +1,29 @@ PORTNAME= dftd4 DISTVERSION= 4.1.0 PORTREVISION= 1 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python API of the DFT-D4 project WWW= https://www.chemie.uni-bonn.de/pctc/mulliken-center/software/dftd4/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>0:devel/py-cffi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} LIB_DEPENDS= libdftd4.so:science/dftd4 RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cffi>0:devel/py-cffi@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= pkgconfig python USE_PYTHON= pep517 autoplist post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/dftd4/_libdftd4${PYTHON_TAG}.so .include diff --git a/science/py-dimod/Makefile b/science/py-dimod/Makefile index 9796968c7838..e9f00b9033f4 100644 --- a/science/py-dimod/Makefile +++ b/science/py-dimod/Makefile @@ -1,33 +1,33 @@ PORTNAME= dimod DISTVERSION= 0.12.21 PORTREVISION= 1 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Shared API for QUBO/Ising samplers WWW= https://github.com/dwavesystems/dimod LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mypy>0:devel/py-mypy@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= autoplist cython distutils unittest USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME} -name "*${PYTHON_TAG}.so" | ${XARGS} ${STRIP_CMD} # tests as of 0.12.21: Ran 2914 tests in 35.706s .include diff --git a/science/py-dipy/Makefile b/science/py-dipy/Makefile index ae3c6b08bf72..e3a2e42de280 100644 --- a/science/py-dipy/Makefile +++ b/science/py-dipy/Makefile @@ -1,50 +1,50 @@ PORTNAME= dipy DISTVERSION= 1.10.0 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python toolbox for analysis of MR diffusion imaging WWW= https://dipy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3.1.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nibabel>=3.0.0:science/py-nibabel@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=21:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.8:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.30.0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}trx-python>=0.2.9:science/py-trx-python@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} # "ml" extra dependencies, see dipy/info.py TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fury>0:graphics/py-fury@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} # "viz" extra dependencies, see dipy/info.py TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cvxpy>0:math/py-cvxpy@${PY_FLAVOR} # "doc" extra dependencies, see dipy/info.py USES= python shebangfix USE_PYTHON= concurrent cython pep517 pytest # autoplist is broken: it produces incorrect entries and unnecessary files are also placed under doc/ SHEBANG_GLOB= *.sh *.py TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: # strip binaries @${STRIP_CMD} \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*/*.so # remove doc files @${RM} -rf ${STAGEDIR}${PREFIX}/doc do-test: cd ${WRKSRC} && ${SETENV} ${TEST_ENV} tools/ci/run_tests.sh .include diff --git a/science/py-dwave-cloud-client/Makefile b/science/py-dwave-cloud-client/Makefile index 4c324c16383a..bae9a6edf3b3 100644 --- a/science/py-dwave-cloud-client/Makefile +++ b/science/py-dwave-cloud-client/Makefile @@ -1,49 +1,49 @@ PORTNAME= dwave-cloud-client DISTVERSION= 0.14.4 PORTREVISION= 1 CATEGORIES= science python www # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: REST interface to communicate with D-Wave Solver API servers WWW= https://github.com/dwavesystems/dwave-cloud-client LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}authlib>=1.2:security/py-authlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}click>=7.0:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.7:devel/py-python-dateutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}diskcache>=5.2.1:devel/py-diskcache@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-networkx>=0.8.9:science/py-dwave-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}homebase>=1.0:devel/py-homebase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}http-sf>=1.0.4:www/py-http-sf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>=5.0.0:devel/py-importlib-metadata@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orjson>=3.10:devel/py-orjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=19:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plucky>=0.4.3:devel/py-plucky@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=2:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.25:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.5.0:devel/py-typing-extensions@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}urllib3>=1.26:net/py-urllib3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}werkzeug>=2.2:www/py-werkzeug@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-networkx>=0.8.9:science/py-dwave-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mock>0:devel/py-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-mock>0:www/py-requests-mock@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist unittest # 2 tests fail, see https://github.com/dwavesystems/dwave-cloud-client/issues/637 USE_GITHUB= yes GH_ACCOUNT= dwavesystems NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/science/py-dwave-gate/Makefile b/science/py-dwave-gate/Makefile index ec419c8720c4..cf73e25010ce 100644 --- a/science/py-dwave-gate/Makefile +++ b/science/py-dwave-gate/Makefile @@ -1,26 +1,26 @@ PORTNAME= dwave-gate DISTVERSION= 0.3.4 PORTREVISION= 1 CATEGORIES= science python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Gate model library WWW= https://github.com/dwavesystems/dwave-gate LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython pep517 pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/science/py-dwave-hybrid/Makefile b/science/py-dwave-hybrid/Makefile index 8a9a7b18140d..25a856d7d08f 100644 --- a/science/py-dwave-hybrid/Makefile +++ b/science/py-dwave-hybrid/Makefile @@ -1,38 +1,38 @@ PORTNAME= dwave-hybrid DISTVERSION= 0.6.15 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Hybrid asynchronous decomposition sampler prototype framework WWW= https://docs.ocean.dwavesys.com/projects/hybrid/en/stable/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>5:devel/py-click@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.2:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-cloud-client>=0.10.6:science/py-dwave-cloud-client@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-networkx>=0.8.8:science/py-dwave-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-preprocessing>=0.5.4:science/py-dwave-preprocessing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-samplers>=1.0.0:science/py-dwave-samplers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-system>=1.16.0:science/py-dwave-system@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}minorminer>=0.1.7:math/py-minorminer@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plucky>=0.4.3:devel/py-plucky@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils autoplist unittest # several tests fail, see https://github.com/dwavesystems/dwave-hybrid/issues/276 USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/science/py-dwave-inspector/Makefile b/science/py-dwave-inspector/Makefile index 55a82df0c9c4..415edaed89ff 100644 --- a/science/py-dwave-inspector/Makefile +++ b/science/py-dwave-inspector/Makefile @@ -1,39 +1,39 @@ PORTNAME= dwave-inspector DISTVERSION= 0.5.5 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Problem Inspector WWW= https://docs.ocean.dwavesys.com/projects/inspector/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.10.0:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-cloud-client>=0.13.0:science/py-dwave-cloud-client@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-system>=1.3.0:science/py-dwave-system@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flask>=2.2:www/py-flask@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orjson>=3.10.0:devel/py-orjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}werkzeug>0:www/py-werkzeug@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}vcrpy>0:devel/py-vcrpy@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython unittest # few tests fail, see https://github.com/dwavesystems/dwave-inspector/issues/151 USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes post-install: # remove conflicting __init__.py, see https://github.com/dwavesystems/dwave-system/issues/462 @${RM} -r \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__init__.py \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__pycache__ .include diff --git a/science/py-dwave-networkx/Makefile b/science/py-dwave-networkx/Makefile index 7d2e5ad15f75..c8c9a57e069a 100644 --- a/science/py-dwave-networkx/Makefile +++ b/science/py-dwave-networkx/Makefile @@ -1,33 +1,33 @@ PORTNAME= dwave-networkx DISTVERSION= 0.8.18 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Extension of the NetworkX Python package for graphs WWW= https://github.com/dwavesystems/dwave-networkx LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.0:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=3.0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist unittest USE_GITHUB= yes GH_ACCOUNT= dwavesystems NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/science/py-dwave-optimization/Makefile b/science/py-dwave-optimization/Makefile index e985030030c5..f8426d108b2d 100644 --- a/science/py-dwave-optimization/Makefile +++ b/science/py-dwave-optimization/Makefile @@ -1,32 +1,32 @@ PORTNAME= dwave-optimization DISTVERSION= 0.6.6 PORTREVISION= 2 CATEGORIES= science python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Nonlinear models for industrial optimization problems WWW= https://github.com/dwavesystems/dwave-optimization LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meson-python>=0.18.0:devel/meson-python@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython pep517 pytest post-install: # strip binaries @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/optimization/_model${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/optimization/_utilities${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/optimization/libdwave-optimization.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/optimization/states${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/optimization/symbols${PYTHON_TAG}.so .include diff --git a/science/py-dwave-preprocessing/Makefile b/science/py-dwave-preprocessing/Makefile index 658a7b6b773f..8e22e440f4da 100644 --- a/science/py-dwave-preprocessing/Makefile +++ b/science/py-dwave-preprocessing/Makefile @@ -1,37 +1,37 @@ PORTNAME= dwave-preprocessing DISTVERSION= 0.6.11 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Preprocessing tools to aid in solving binary quadratic models WWW= https://github.com/dwavesystems/dwave-preprocessing LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.6:science/py-dimod@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.20:science/py-dimod@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= localbase:ldflags python USE_PYTHON= cython distutils unittest # 1 test fails, see https://github.com/dwavesystems/dwave-preprocessing/issues/74 USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: # strip binaries @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/preprocessing/cyfix_variables${PYTHON_TAG}.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/preprocessing/presolve/cypresolve${PYTHON_TAG}.so # remove conflicting __init__.py, see https://github.com/dwavesystems/dwave-preprocessing/issues/45 @${RM} -r \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__init__.py \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__pycache__ .include diff --git a/science/py-dwave-samplers/Makefile b/science/py-dwave-samplers/Makefile index 784e83b2aa29..665b57950646 100644 --- a/science/py-dwave-samplers/Makefile +++ b/science/py-dwave-samplers/Makefile @@ -1,51 +1,51 @@ PORTNAME= dwave-samplers DISTVERSION= 1.7.0 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Classical algorithms for solving binary quadratic models WWW= https://github.com/dwavesystems/dwave-samplers LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.13:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=3.0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}reno>0:textproc/py-reno@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}parameterized>0:devel/py-parameterized@${PY_FLAVOR} USES= python USE_PYTHON= autoplist cython distutils unittest # 2 tests fail, see https://github.com/dwavesystems/dwave-samplers/issues/66 USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: # fix file paths, workaround for https://github.com/dwavesystems/dwave-samplers/issues/31 @cd ${STAGEDIR}${PYTHON_SITELIBDIR} && ( \ for f in `${FIND} samplers -name "*.so"`; do \ ${MV} $$f dwave/$$f; \ done; \ ${RM} -r samplers; \ ) # strip binaries @${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/samplers -name "*${PYTHON_TAG}.so" | ${XARGS} ${STRIP_CMD} # remove conflicting __init__.py, see https://github.com/dwavesystems/dwave-system/issues/462 @${RM} -r \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__init__.py \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__pycache__ post-test: @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/example.py # tests as of 1.6.0: Ran 522 tests in 102.085s .include diff --git a/science/py-dwave-system/Makefile b/science/py-dwave-system/Makefile index c7e43db6650f..53b4bbaecc2e 100644 --- a/science/py-dwave-system/Makefile +++ b/science/py-dwave-system/Makefile @@ -1,44 +1,44 @@ PORTNAME= dwave-system DISTVERSION= 1.34.0 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: API for incorporating the D-Wave system as a sampler WWW= https://github.com/dwavesystems/dwave-system LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.20:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-cloud-client>=0.12.0:science/py-dwave-cloud-client@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-networkx>=0.8.10:science/py-dwave-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-optimization>=0.6.6:science/py-dwave-optimization@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-preprocessing>=0.5.0:science/py-dwave-preprocessing@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-samplers>=1.0.0:science/py-dwave-samplers@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}homebase>=1.0.0:devel/py-homebase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}minorminer>=0.2.19:math/py-minorminer@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.3:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils unittest autoplist # 1 test fails because the closed source dwave.drivers optional dependency is missing USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes post-install: # remove conflicting __init__.py, see https://github.com/dwavesystems/dwave-system/issues/462 @${RM} -r \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__init__.py \ ${STAGEDIR}${PYTHON_SITELIBDIR}/dwave/__pycache__ .include diff --git a/science/py-earthpy/Makefile b/science/py-earthpy/Makefile index 7e774e2b1c69..c766f7dc2f41 100644 --- a/science/py-earthpy/Makefile +++ b/science/py-earthpy/Makefile @@ -1,31 +1,31 @@ PORTNAME= earthpy PORTVERSION= 0.9.4 PORTREVISION= 6 CATEGORIES= science geography python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Plot and manipulate spatial data in Python WWW= https://github.com/earthlab/earthpy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rasterio>=0:graphics/py-rasterio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geopandas>=0:graphics/py-geopandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0:graphics/py-scikit-image@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rasterio>=0:graphics/py-rasterio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}geopandas>=0:graphics/py-geopandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0:graphics/py-scikit-image@${PY_FLAVOR} USES= python USE_PYTHON= distutils .include diff --git a/science/py-geometric/Makefile b/science/py-geometric/Makefile index 1e3fd75df693..93ea9ad24dcd 100644 --- a/science/py-geometric/Makefile +++ b/science/py-geometric/Makefile @@ -1,28 +1,28 @@ PORTNAME= geometric DISTVERSION= 1.1 PORTREVISION= 3 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Geometry optimization for quantum chemistry WWW= https://geometric.readthedocs.io/en/latest/ \ https://github.com/leeping/geomeTRIC LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} USES= python shebangfix USE_PYTHON= distutils concurrent autoplist pytest # some tests fail because of missing large test files SHEBANG_GLOB= *.py NO_ARCH= yes .include diff --git a/science/py-gpaw/Makefile b/science/py-gpaw/Makefile index 9e1c778d1d96..f8d58c601c46 100644 --- a/science/py-gpaw/Makefile +++ b/science/py-gpaw/Makefile @@ -1,43 +1,43 @@ PORTNAME= gpaw DISTVERSION= 24.6.0 PORTREVISION= 6 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DFT and beyond within the projector-augmented wave method in chemistry WWW= https://wiki.fysik.dtu.dk/gpaw/ \ https://gitlab.com/gpaw/gpaw LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libblas.so:math/blas \ libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libxc.so:science/libxc RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ gpaw-setups>0:science/gpaw-setups USES= gettext-runtime localbase python shebangfix USE_PYTHON= distutils concurrent autoplist SHEBANG_FILES= tools/* LDFLAGS= -lmpi # otherwise: ImportError: /usr/local/lib/python3.8/site-packages/_gpaw.cpython-38.so: Undefined symbol "MPI_Comm_rank" post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_gpaw*.so do-test: install # tests fail to run, see https://gitlab.com/gpaw/gpaw/-/issues/1273 @${ECHO} "== Performing a test calculation on one CPU ==" @gpaw test @${ECHO} "== Performing a test calculation on 8 CPUs ==" @gpaw -P 8 test .include diff --git a/science/py-gsd/Makefile b/science/py-gsd/Makefile index 0652dc399f78..a0abe8bc947a 100644 --- a/science/py-gsd/Makefile +++ b/science/py-gsd/Makefile @@ -1,31 +1,31 @@ PORTNAME= gsd DISTVERSION= 3.4.1 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= GSD (General Simulation Data) file format for Python WWW= https://bitbucket.org/glotzer/gsd/wiki/Home LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils cython autoplist pytest TEST_WRKSRC= ${WRKSRC}/gsd/test #TEST_ARGS= --pyargs gsd -p gsd.pytest_plugin_validate --validate # enable this line to run longer tests, see https://gsd.readthedocs.io/en/v2.6.0/installation.html#run-tests TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-extract: # force cythonization because pre-cythonized fl.c fails to complile @${RM} ${WRKSRC}/gsd/fl.c post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/gsd/fl*.so .include diff --git a/science/py-h5json/Makefile b/science/py-h5json/Makefile index 05c7989010b9..7bdc69fe977c 100644 --- a/science/py-h5json/Makefile +++ b/science/py-h5json/Makefile @@ -1,24 +1,24 @@ PORTNAME= h5json DISTVERSION= 1.1.3 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Tools and library for representing HDF5 in JSON WWW= https://github.com/HDFGroup/hdf5-json LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/science/py-h5pyd/Makefile b/science/py-h5pyd/Makefile index f013ed993f78..0099da2681d9 100644 --- a/science/py-h5pyd/Makefile +++ b/science/py-h5pyd/Makefile @@ -1,27 +1,27 @@ PORTNAME= h5pyd DISTVERSION= 0.18.0 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= h5py compatible client lib for HDF REST API WWW= https://github.com/HDFGroup/h5pyd LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyjwt>0:www/py-pyjwt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-unixsocket>0:www/py-requests-unixsocket@${PY_FLAVOR} USES= pkgconfig python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/science/py-hiPhive/Makefile b/science/py-hiPhive/Makefile index 3b000c66153a..f5094d2a1f9a 100644 --- a/science/py-hiPhive/Makefile +++ b/science/py-hiPhive/Makefile @@ -1,44 +1,44 @@ PORTNAME= hiPhive DISTVERSION= 1.5 PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} #DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= High-order force constants for the masses WWW= https://hiphive.materialsmodeling.org/ \ https://gitlab.com/materials-modeling/hiphive/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.55:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.1:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}trainstation>=0.2:science/py-trainstation@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests fail due to the numba bug: https://github.com/numba/numba/issues/9130 USE_GITLAB= yes GL_ACCOUNT= materials-modeling GL_PROJECT= ${PORTNAME:tl} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes # tests as of 1.5: 102 passed, 4 warnings, 1 error in 90.96s (0:01:30), see https://gitlab.com/materials-modeling/hiphive/-/issues/578 .include diff --git a/science/py-icet/Makefile b/science/py-icet/Makefile index a33ebe876d0e..1abea2acfeba 100644 --- a/science/py-icet/Makefile +++ b/science/py-icet/Makefile @@ -1,44 +1,44 @@ PORTNAME= icet DISTVERSION= 3.2 PORTREVISION= 1 CATEGORIES= science # chemistry, physics #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pythonic approach to alloy cluster expansions WWW= https://icet.materialsmodeling.org \ https://gitlab.com/materials-modeling/icet LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>=0.55:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.23:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=1.12.0:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}trainstation>=1.1:science/py-trainstation@${PY_FLAVOR} USES= compiler:c++14-lang python USE_PYTHON= pep517 autoplist pytest USE_GITLAB= yes GL_ACCOUNT= materials-modeling TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/_icet.cpython-311.so pre-test: # this test causes the whole testsuite to hard-fail in the beginning for some reason @${RM} -rf ${TEST_WRKSRC}/unittest/test_mchammer/test_site_occupancy_observer.py # tests as of 3.2: 33 failed, 794 passed, 5 warnings in 166.64s (0:02:46), see https://gitlab.com/materials-modeling/icet/-/issues/630 .include diff --git a/science/py-ipygany/Makefile b/science/py-ipygany/Makefile index 6848ddba8c66..b3bfd46af451 100644 --- a/science/py-ipygany/Makefile +++ b/science/py-ipygany/Makefile @@ -1,26 +1,26 @@ PORTNAME= ipygany DISTVERSION= 0.5.0 PORTREVISION= 5 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= 3-D scientific visualization in Jupyter Notebooks WWW= https://github.com/martinRenou/ipygany LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jupyter-packaging>0:devel/py-jupyter-packaging@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}traittypes>0:devel/py-traittypes@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipydatawidgets>0:devel/py-ipydatawidgets@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist pytest NO_ARCH= yes .include diff --git a/science/py-kimpy/Makefile b/science/py-kimpy/Makefile index 25a3e5041ae1..b8d987a3c764 100644 --- a/science/py-kimpy/Makefile +++ b/science/py-kimpy/Makefile @@ -1,29 +1,29 @@ PORTNAME= kimpy DISTVERSION= 2.1.3 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python interface to the KIM-API WWW= https://openkim.org/kim-api/ LICENSE= CDDL LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} LIB_DEPENDS= libkim-api.so:science/kim-api -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++20-lang pkgconfig python USE_PYTHON= distutils autoplist pytest # tests fail to run, see https://github.com/openkim/kimpy/issues/16 TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/kimpy/*${PYTHON_TAG}.so # tests as of 2.1.3: 21 passed in 2.91s .include diff --git a/science/py-kliff/Makefile b/science/py-kliff/Makefile index e1ba1505967b..07070c7dfd0a 100644 --- a/science/py-kliff/Makefile +++ b/science/py-kliff/Makefile @@ -1,38 +1,38 @@ PORTNAME= kliff DISTVERSION= 0.4.4 PORTREVISION= 2 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= KIM-based Learning-Integrated Fitting Framework WWW= https://kliff.readthedocs.io/en/latest/ \ https://github.com/openkim/kliff LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}loguru>0:devel/py-loguru@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}monty>0:devel/py-monty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>0:devel/py-pyyaml@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}emcee>0:math/py-emcee@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}kimpy>0:science/py-kimpy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR} \ USES= compiler:c++11-lang python USE_PYTHON= distutils autoplist pytest # tests fail to run, see https://github.com/openkim/kliff/issues/81, and https://github.com/openkim/kliff/issues/197 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -name "*.so" | ${XARGS} ${STRIP_CMD} # tests as of 0.4.4: 17 failed, 29 passed, 16 errors in 14.58s, see https://github.com/openkim/kliff/issues/210 .include diff --git a/science/py-libgetar/Makefile b/science/py-libgetar/Makefile index 6d7418ff1407..3893da4c01bf 100644 --- a/science/py-libgetar/Makefile +++ b/science/py-libgetar/Makefile @@ -1,34 +1,34 @@ PORTNAME= libgetar DISTVERSIONPREFIX= v DISTVERSION= 1.1.7 PORTREVISION= 2 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library to read and write GEneric Trajectory ARchives WWW= https://github.com/glotzerlab/libgetar LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}breathe>0:devel/py-breathe@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython autoplist USE_GITHUB= yes GH_ACCOUNT= glotzerlab TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/gtar/_gtar${PYTHON_TAG}.so do-test: @cd ${WRKSRC}/test && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover .include diff --git a/science/py-lifelines/Makefile b/science/py-lifelines/Makefile index 7d1e91bf6fca..472e75259c5c 100644 --- a/science/py-lifelines/Makefile +++ b/science/py-lifelines/Makefile @@ -1,27 +1,27 @@ PORTNAME= lifelines DISTVERSION= 0.19.5 PORTREVISION= 5 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rm@FreeBSD.org COMMENT= Survival analysis in Python WWW= https://github.com/CamDavidsonPilon/lifelines/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.18:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>1.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>2.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bottleneck>=1.0:math/py-bottleneck@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}autograd>=1.2:math/py-autograd@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile index b3168197bd5b..acdec4f94038 100644 --- a/science/py-mdp/Makefile +++ b/science/py-mdp/Makefile @@ -1,29 +1,29 @@ PORTNAME= mdp PORTVERSION= 3.5 PORTREVISION= 6 CATEGORIES= science python MASTER_SITES= SF/${PORTNAME}-toolkit/${PORTNAME}-toolkit/${PORTVERSION} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tu}-${PORTVERSION} MAINTAINER= bofh@FreeBSD.org COMMENT= Modular toolkit for Data Processing WWW= https://mdp-toolkit.sourceforge.net/ LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist OPTIONS_DEFINE= LIBSVM SCIPY LIBSVM_DESC= Provide the LibSVMClassifier node SCIPY_DESC= Instal SciPy versions of eigensolver, FFT and convolution LIBSVM_RUN_DEPENDS= libsvm>2.91:science/libsvm \ libsvm-python>2.91:science/libsvm-python SCIPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>=0.5.2:science/py-scipy@${PY_FLAVOR} .include diff --git a/science/py-meshio/Makefile b/science/py-meshio/Makefile index 7ddb40379bb5..e58f25326083 100644 --- a/science/py-meshio/Makefile +++ b/science/py-meshio/Makefile @@ -1,29 +1,29 @@ PORTNAME= meshio PORTVERSION= 5.3.5 PORTREVISION= 1 CATEGORIES= science cad python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= I/O for many mesh formats WWW= https://github.com/nschloe/meshio LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rich>0:textproc/py-rich@${PY_FLAVOR}\ ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR} USES= python USE_PYTHON= pep517 pytest PLIST_SUB= VER=${PORTVERSION} NO_ARCH= yes .include diff --git a/science/py-mmtf-python/Makefile b/science/py-mmtf-python/Makefile index 44a765d129d9..7c17c9b0b561 100644 --- a/science/py-mmtf-python/Makefile +++ b/science/py-mmtf-python/Makefile @@ -1,32 +1,32 @@ PORTNAME= mmtf-python DISTVERSIONPREFIX= v DISTVERSION= 1.1.3 PORTREVISION= 3 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= MMTF (Macromolecular Transmission Format) Python API WWW= https://github.com/rcsb/mmtf-python LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}msgpack>=1.0.0:devel/py-msgpack@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist USE_GITHUB= yes GH_ACCOUNT= rcsb NO_ARCH= yes post-build: @${RM} ${STAGEDIR}${PREFIX}/bin/sample post-plist: @${REINPLACE_CMD} -e '|bin/sample|d' ${TMPPLIST} .include diff --git a/science/py-mne/Makefile b/science/py-mne/Makefile index d245e0dcdbe0..9245741a9520 100644 --- a/science/py-mne/Makefile +++ b/science/py-mne/Makefile @@ -1,34 +1,34 @@ PORTNAME= mne PORTVERSION= 1.11.0 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python project for MEG and EEG data analysis WWW= https://mne.tools/stable/ \ https://github.com/mne-tools/mne-python LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lazy_loader>=0.3:devel/py-lazy_loader@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pooch>=1.5:devel/py-pooch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.11:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist NO_ARCH= yes # tests as of 1.10.1: pytest tests available but require extra dependencies, skipped for packaging .include diff --git a/science/py-molmod/Makefile b/science/py-molmod/Makefile index 32e3724b887d..b175972ecf83 100644 --- a/science/py-molmod/Makefile +++ b/science/py-molmod/Makefile @@ -1,28 +1,28 @@ PORTNAME= molmod DISTVERSION= 1.4.8 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Collection of molecular modelling tools for python WWW= https://github.com/molmod/molmod LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} USES= python shebangfix SHEBANG_GLOB= *.py USE_PYTHON= autoplist cython0 cython0_run distutils do-test: # Tests fail: https://github.com/molmod/molmod/issues/27 @cd ${WRKSRC} && \ ${SETENV} ${MAKE_ENV} nosetests-${PYTHON_VER} -v molmod .include diff --git a/science/py-mpcontribs-client/Makefile b/science/py-mpcontribs-client/Makefile index 0a4f01763853..5b4dae6a8652 100644 --- a/science/py-mpcontribs-client/Makefile +++ b/science/py-mpcontribs-client/Makefile @@ -1,45 +1,45 @@ PORTNAME= mpcontribs-client DISTVERSION= 5.10.1 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Client library for MPContribs API on contribs-api.materialsproject.org WWW= https://github.com/materialsproject/MPContribs/tree/master/mpcontribs-client LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}boltons>0:devel/py-boltons@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bravado>0:www/py-bravado@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cachetools>0:devel/py-cachetools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}filetype>0:devel/py-filetype@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flatten-dict>0:devel/py-flatten-dict@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}json2html>0:textproc/py-json2html@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>0:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>0:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyisemail>0:mail/py-pyisemail@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymatgen>0:science/py-pymatgen@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pymongo>0:databases/py-pymongo@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-futures>0:www/py-requests-futures@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}semantic-version>0:devel/py-semantic-version@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}swagger-spec-validator>0:devel/py-swagger-spec-validator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ujson>0:devel/py-ujson@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # tests fail due to a missing package mpcontribs.api, see https://github.com/materialsproject/MPContribs/issues/1590 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes .include diff --git a/science/py-mplhep/Makefile b/science/py-mplhep/Makefile index dab303fdf531..be6245c36fe2 100644 --- a/science/py-mplhep/Makefile +++ b/science/py-mplhep/Makefile @@ -1,40 +1,40 @@ PORTNAME= mplhep DISTVERSION= 0.3.59 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Matplotlib styles for HEP WWW= https://mplhep.readthedocs.io/en/latest/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.4:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mplhep-data>=0.0.4:science/py-mplhep-data@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uhi>=0.2.0:misc/py-uhi@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}boost-histogram>0:misc/py-boost-histogram@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hist>0:misc/py-hist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mpl>0:devel/py-pytest-mpl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uproot>0:devel/py-uproot@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes # tests as for 0.3.59: 4 failed, 74 passed, 35 skipped, 15 warnings in 22.65s (4 failures are due to missing dependency uproot4) .include diff --git a/science/py-ncrystal/Makefile b/science/py-ncrystal/Makefile index 65bcdf5502b5..b2436fddb58d 100644 --- a/science/py-ncrystal/Makefile +++ b/science/py-ncrystal/Makefile @@ -1,40 +1,40 @@ PORTNAME= ncrystal DISTVERSIONPREFIX= v DISTVERSION= 4.2.8 PORTREVISION= 1 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for thermal neutron transport in crystals and other materials WWW= https://mctools.github.io/ncrystal/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ cmake:devel/cmake-core -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist USE_GITHUB= yes GH_ACCOUNT= mctools TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ PATH=${STAGEDIR}${PREFIX}/bin:${PATH} #TEST_WRKSRC= ${WRKSRC}/ncrystal_python post-install: # strip binary #@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/NCrystal/ncrystal_pyinst_data/lib/libNCrystal.so do-test: @cd ${TEST_WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m NCrystal.test all .include diff --git a/science/py-neo/Makefile b/science/py-neo/Makefile index 86663b0e933e..10bc0ca202b9 100644 --- a/science/py-neo/Makefile +++ b/science/py-neo/Makefile @@ -1,35 +1,35 @@ PORTNAME= neo PORTVERSION= 0.14.3 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for representing electrophysiology data in Python WWW= https://neo.readthedocs.io/en/latest/ \ https://github.com/NeuralEnsemble/python-neo LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}quantities>=0.16.1:science/py-quantities@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist concurrent pytest TEST_ENV= ${MAKE_ENV} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ DISPLAY=${DISPLAY} \ XAUTHORITY=${XAUTHORITY} TEST_WRKSRC= ${WRKSRC}/neo/test NO_ARCH= yes # tests as of 0.14.2: 669 passed, 731 skipped in 80.29s .include diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile index f6bedee9fca5..d9fdb0bec74a 100644 --- a/science/py-netCDF4/Makefile +++ b/science/py-netCDF4/Makefile @@ -1,51 +1,51 @@ PORTNAME= netCDF4 DISTVERSION= 1.7.2 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) WWW= https://unidata.github.io/netcdf4-python/ LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cftime>=0:devel/py-cftime@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent cython cython_run distutils DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/py-${PORTNAME} PORTDOCS= * PORTEXAMPLES= * OPTIONS_DEFINE= DOCS EXAMPLES post-patch: @${ECHO_CMD} -n > ${WRKSRC}/setup.cfg @${ECHO_CMD} "[options]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "use_ncconfig=True" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "ncconfig=${LOCALBASE}/bin/nc-config" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "[directories]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_libdir=${LOCALBASE}/lib" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_incdir=${LOCALBASE}/include" >> ${WRKSRC}/setup.cfg post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netCDF4/_netCDF4*.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples && ${INSTALL_DATA} * ${STAGEDIR}${EXAMPLESDIR}) .include diff --git a/science/py-nglview/Makefile b/science/py-nglview/Makefile index e143a0dcbabb..785407947a69 100644 --- a/science/py-nglview/Makefile +++ b/science/py-nglview/Makefile @@ -1,31 +1,31 @@ PORTNAME= nglview DISTVERSION= 4.0 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= IPython widget to view molecular structures and trajectories WWW= http://nglviewer.org/nglview/latest/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}jupyter-packaging>=0.7.9:devel/py-jupyter-packaging@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipywidgets>=8:devel/py-ipywidgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab>=3:devel/py-jupyterlab@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jupyterlab-widgets>0:devel/py-jupyterlab-widgets@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}notebook>=7:www/py-notebook@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # 28 tests fail because of missing test dependencies NO_ARCH= yes .include diff --git a/science/py-nibabel/Makefile b/science/py-nibabel/Makefile index dcde7df55c23..4b324568088d 100644 --- a/science/py-nibabel/Makefile +++ b/science/py-nibabel/Makefile @@ -1,42 +1,42 @@ PORTNAME= nibabel DISTVERSION= 5.3.2 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Read/write some common neuroimaging file formats WWW= https://nipy.org/nibabel/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=17:devel/py-packaging@${PY_FLAVOR} py311_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}importlib-resources>=1.1.0:devel/py-importlib-resources@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.6:devel/py-typing-extensions@${PY_FLAVOR} py312_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.6:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-doctestplus>0:devel/py-pytest-doctestplus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-httpserver>0:devel/py-pytest-httpserver@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pydicom>0:science/py-pydicom@${PY_FLAVOR} USES= python USE_PYTHON= pep517 concurrent autoplist pytest # 2 test fail, 1 error, see https://github.com/nipy/nibabel/issues/1386 NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PATH=${STAGEDIR}${PREFIX}/bin post-install: @${REINPLACE_CMD} -i '' -e 's|#!python|#!${PYTHON_CMD}|' \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/nibabel/cmdline/diff.py \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/nibabel/cmdline/ls.py # tests as of 5.3.2: 2 failed, 5414 passed, 50 skipped, 37 xfailed, 5 xpassed, 500 warnings, 1 error in 318.54s (0:05:18) .include diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile index 1a8ab9e4b87a..08237a25d430 100644 --- a/science/py-obspy/Makefile +++ b/science/py-obspy/Makefile @@ -1,37 +1,37 @@ PORTNAME= obspy PORTVERSION= 1.5.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Python framework for seismological observatories WWW= https://www.obspy.org/ LICENSE= LGPL3 -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}future>=0.12.4:devel/py-future@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>=2.2:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>=0:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy10>=0:databases/py-sqlalchemy10@${PY_FLAVOR} RUN_DEPENDS:= ${BUILD_DEPENDS} USES= fortran python shebangfix SHEBANG_FILES= obspy/taup/tests/data/TauP_test_data/gendata.sh USE_LDCONFIG= yes LDFLAGS+= -shared USE_PYTHON= autoplist distutils LDFLAGS+= -shared post-patch: ${REINPLACE_CMD} -e "s#FC#${FC}#g" ${WRKSRC}/setup.py post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/obspy/lib/*.so .include diff --git a/science/py-oddt/Makefile b/science/py-oddt/Makefile index 60bed3a22c41..9a9a3a7412a1 100644 --- a/science/py-oddt/Makefile +++ b/science/py-oddt/Makefile @@ -1,29 +1,29 @@ PORTNAME= oddt DISTVERSION= 0.7 PORTREVISION= 4 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Open Drug Discovery Toolkit WWW= https://github.com/oddt/oddt LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=0.9.4:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=0.19.2:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.18:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.17:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_GITHUB= yes USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes .include diff --git a/science/py-openpiv/Makefile b/science/py-openpiv/Makefile index 38bda7888609..a26bc0dadeba 100644 --- a/science/py-openpiv/Makefile +++ b/science/py-openpiv/Makefile @@ -1,29 +1,29 @@ PORTNAME= openpiv PORTVERSION= 0.25.3 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= makc@FreeBSD.org COMMENT= Python module for Particle Image Velocimetry WWW= https://github.com/OpenPIV LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}poetry-core>0:devel/py-poetry-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}imageio>0:graphics/py-imageio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-resources>0:devel/py-importlib-resources@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>0:devel/py-natsort@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} USES= python USE_PYTHON= autoplist pep517 NO_ARCH= yes .include diff --git a/science/py-optking/Makefile b/science/py-optking/Makefile index 91be9f19901f..dcae07ab8245 100644 --- a/science/py-optking/Makefile +++ b/science/py-optking/Makefile @@ -1,28 +1,28 @@ PORTNAME= optking DISTVERSION= 0.3.0 PORTREVISION= 4 CATEGORIES= science python # chemistry PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python version of the PSI4 geometry optimization program by R.A. King WWW= https://github.com/psi-rking/optking LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}msgpack>=1.0:devel/py-msgpack@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qcelemental>=0.20.0:science/py-qcelemental@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qcengine>=0.20.0:science/py-qcengine@${PY_FLAVOR} TEST_DEPENDS= dftd3:science/dftd3 USES= python USE_PYTHON= distutils autoplist pytest # some tests fail USE_GITHUB= yes GH_ACCOUNT= psi-rking NO_ARCH= yes .include diff --git a/science/py-paramz/Makefile b/science/py-paramz/Makefile index ed3901df6ab5..17d1ad2d5d2c 100644 --- a/science/py-paramz/Makefile +++ b/science/py-paramz/Makefile @@ -1,29 +1,29 @@ PORTNAME= paramz DISTVERSIONPREFIX= v DISTVERSION= 0.9.6 PORTREVISION= 2 CATEGORIES= science python #MASTER_SITES= PYPI # no tarball PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Parameterization framework WWW= https://github.com/sods/paramz LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>=4.0.10:devel/py-decorator@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist USE_GITHUB= yes GH_ACCOUNT= sods NO_ARCH= yes .include diff --git a/science/py-penaltymodel/Makefile b/science/py-penaltymodel/Makefile index 961548aa95b6..962646a4c65a 100644 --- a/science/py-penaltymodel/Makefile +++ b/science/py-penaltymodel/Makefile @@ -1,33 +1,33 @@ PORTNAME= penaltymodel DISTVERSION= 1.3.0 PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Utilities and interfaces for using penalty models WWW= https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dimod>=0.12.13:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}homebase>=1.0.1:devel/py-homebase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=3.0:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.3:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils cython autoplist unittest USE_GITHUB= yes GH_ACCOUNT= dwavesystems TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes .include diff --git a/science/py-periodictable/Makefile b/science/py-periodictable/Makefile index 165a95135838..3c8521b6c7ff 100644 --- a/science/py-periodictable/Makefile +++ b/science/py-periodictable/Makefile @@ -1,30 +1,30 @@ PORTNAME= periodictable DISTVERSIONPREFIX= v DISTVERSION= 2.1.0 PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # no tarball available PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Extensible periodic table of the elements pre-populated with data WWW= https://periodictable.readthedocs.io/en/latest/ \ https://github.com/python-periodictable/periodictable LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest # tests fail to run, see https://github.com/python-periodictable/periodictable/issues/106 USE_GITHUB= yes GH_ACCOUNT= python-periodictable NO_ARCH= yes .include diff --git a/science/py-phono3py/Makefile b/science/py-phono3py/Makefile index d018c606fab4..c15072cb915e 100644 --- a/science/py-phono3py/Makefile +++ b/science/py-phono3py/Makefile @@ -1,42 +1,42 @@ PORTNAME= phono3py DISTVERSION= 3.28.0 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Software to calculate phonon-phonon interaction and related properties WWW= https://phonopy.github.io/phono3py/ \ https://github.com/phonopy/phono3py LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.2:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=2.32:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=2.3:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ cmake:devel/cmake-core \ ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} CFLAGS+= -fPIC USES= blaslapack:openblas fortran localbase python USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test # tests as of 3.9.0: 11 failed, 179 passed, 8 skipped, 6 warnings, 4 errors in 2175.15s (0:36:15), see https://github.com/phonopy/phono3py/issues/307 # tests as of 3.25.0: 21 failed, 193 passed, 11 skipped, 30 warnings, 45 errors in 152.92s (0:02:32), see https://github.com/phonopy/phono3py/issues/307 # - tests fail to find submodules that are installed and import fine when run standalone .include diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile index 582ec0d93ce3..566821844f21 100644 --- a/science/py-phonopy/Makefile +++ b/science/py-phonopy/Makefile @@ -1,53 +1,53 @@ PORTNAME= phonopy DISTVERSION= 3.4.0 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for phonon calculations at harmonic and quasi-harmonic levels WWW= https://phonopy.github.io/phonopy/ \ https://github.com/phonopy/phonopy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= cmake:devel/cmake-core \ ${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.2:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=2.3:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}symfc>=1.1.6:science/py-symfc@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/test post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/phonopy/_phonopy${PYTHON_TAG}.so # tests as of 3.0.1: (see https://github.com/phonopy/phonopy/issues/739) # Results (47.21s): # 26 failed # 183 passed # 6 skipped # 53 warnings # 272 errors # tests as of 3.4.0: # Results (59.91s): # 380 failed # 1997 passed # 22 skipped # 52 warnings .include diff --git a/science/py-pyberny/Makefile b/science/py-pyberny/Makefile index 8b34ce7d7c66..94bc48c73071 100644 --- a/science/py-pyberny/Makefile +++ b/science/py-pyberny/Makefile @@ -1,26 +1,26 @@ PORTNAME= pyberny DISTVERSION= 0.6.3 PORTREVISION= 3 CATEGORIES= science # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Optimizer of molecular geometries with respect to the total energy WWW= https://github.com/jhrmnn/pyberny LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= python USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes do-test: install # no tests run, see https://github.com/jhrmnn/pyberny/issues/36 @cd ${WRKSRC} && pytest -rs --pyargs berny .include diff --git a/science/py-pygmo2/Makefile b/science/py-pygmo2/Makefile index 100926346dfe..6803d0a1226f 100644 --- a/science/py-pygmo2/Makefile +++ b/science/py-pygmo2/Makefile @@ -1,41 +1,41 @@ PORTNAME= pygmo2 DISTVERSIONPREFIX= v DISTVERSION= 2.19.7 PORTREVISION= 9 CATEGORIES= science graphics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python platform to perform parallel computations of optimisation tasks WWW= https://esa.github.io/pygmo2/ LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= pybind11>0:devel/pybind11 LIB_DEPENDS= libpagmo.so:science/pagmo2 \ libboost_serialization.so:devel/boost-libs \ libnlopt.so:math/nlopt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cloudpickle>0:devel/py-cloudpickle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>0:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} USES= cmake compiler:c++17-lang python USE_PYTHON= flavors USE_GITHUB= yes GH_ACCOUNT= esa CMAKE_ON= PYGMO_ENABLE_IPO CMAKE_ARGS= -DFREEBSD_PYTHON_DISTVERSION=${PYTHON_DISTVERSION} CXXFLAGS+= -I${LOCALBASE}/include/coin # see https://github.com/esa/pygmo2/issues/58 do-test: install # tests require sysctl sudo sysctl kern.threads.max_threads_per_proc variable to be at least 15000 ; test taken from azure-pipelines.yml # some tests fail, see https://github.com/esa/pygmo2/issues/135 @${PYTHON_CMD} -c "import pygmo; pygmo.test.run_test_suite(1); pygmo.mp_island.shutdown_pool(); pygmo.mp_bfe.shutdown_pool()" .include diff --git a/science/py-pyked/Makefile b/science/py-pyked/Makefile index d53ea7654cdd..3a0bdc49ac32 100644 --- a/science/py-pyked/Makefile +++ b/science/py-pyked/Makefile @@ -1,33 +1,33 @@ PORTNAME= pyked DISTVERSIONPREFIX= v DISTVERSION= 0.4.1-16 DISTVERSIONSUFFIX= -gfcccaf8 PORTREVISION= 5 CATEGORIES= science python #MASTER_SITES= PYPI 0.4.1 is broken there PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for manipulating Chemical Kinetics Experimental Data files WWW= https://pr-omethe-us.github.io/PyKED/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cerberus>=1.0.0:devel/py-cerberus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}habanero>=0.6.0:www/py-habanero@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>=0.7.2:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uncertainties>=3.0.1:math/py-uncertainties@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=3.12:devel/py-pyyaml@${PY_FLAVOR} \ USES= python USE_PYTHON= distutils concurrent autoplist USE_GITHUB= yes GH_ACCOUNT= pr-omethe-us GH_PROJECT= PyKED NO_ARCH= yes .include diff --git a/science/py-pymatgen/Makefile b/science/py-pymatgen/Makefile index 1a00000e9732..131b538fd7a2 100644 --- a/science/py-pymatgen/Makefile +++ b/science/py-pymatgen/Makefile @@ -1,65 +1,65 @@ PORTNAME= pymatgen DISTVERSIONPREFIX= v DISTVERSION= 2025.10.7 PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Materials Genomics is a robust materials analysis code WWW= https://pymatgen.org/ \ https://github.com/materialsproject/pymatgen LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bibtexparser>=1.4.0:textproc/py-bibtexparser@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=1:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}monty>=2025.1.9:devel/py-monty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.7:math/py-networkx@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}orjson>=3.10:devel/py-orjson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}palettable>=3.3.3:misc/py-palettable@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>=2:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=5.0.0:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.30:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>=0.17.0:devel/py-ruamel.yaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.13.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=2.5:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.3:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>=0.9:devel/py-tabulate@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>=4.60:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uncertainties>=3.1.4:math/py-uncertainties@${PY_FLAVOR} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}ase>=3.23.0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:www/py-beautifulsoup@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=3.11.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=2.33.3:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}seekpath>=2.0.1:science/py-seekpath@${PY_FLAVOR} # optional dependencies TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pybtex>0:textproc/py-pybtex@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= pep517 cython concurrent autoplist pytest USE_GITHUB= yes GH_ACCOUNT= materialsproject TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ PMG_TEST_FILES_DIR=${WRKSRC}/tests/files \ DISPLAY=${DISPLAY} \ XAUTHORITY=${XAUTHORITY} TEST_WRKSRC= ${WRKSRC}/tests post-install: # strip binaries @cd ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} && ${STRIP_CMD} \ optimization/neighbors*.so \ util/coord_cython*.so # tests as of 2025.2.18: 56 failed, 2912 passed, 149 skipped, 1980 warnings in 11080.55s (3:04:40), see https://github.com/materialsproject/pymatgen/issues/4264 # tests as of 2025.5.28: 56 failed, 3015 passed, 161 skipped, 131 warnings, 7 errors in 5700.13s (1:35:00) .include diff --git a/science/py-pymol/Makefile b/science/py-pymol/Makefile index d90847e3d9e8..f9239adffe0b 100644 --- a/science/py-pymol/Makefile +++ b/science/py-pymol/Makefile @@ -1,63 +1,63 @@ PORTNAME= pymol DISTVERSIONPREFIX= v DISTVERSION= 3.0.0 PORTREVISION= 3 CATEGORIES= science biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= OpenGL-based molecular visualization system WWW= https://pymol.org/2/ LICENSE= PyMOL LICENSE_NAME= Open-Source PyMOL Copyright LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${LOCALBASE}/include/glm/glm.hpp:math/glm \ ${LOCALBASE}/include/mmtf.hpp:science/mmtf-cpp LIB_DEPENDS= libfreetype.so:print/freetype2 \ libnetcdf.so:science/netcdf \ libpng16.so:graphics/png RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Pmw>0:x11-toolkits/py-Pmw@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang gl gnome python tar:bz2 USE_GL= gl glew glu USE_GNOME= libxml2 USE_PYTHON= distutils concurrent # autoplist is broken: https://github.com/schrodinger/pymol-open-source/issues/99 USE_GITHUB= yes GH_ACCOUNT= schrodinger GH_PROJECT= ${PORTNAME}-open-source CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}chempy # chempy port is unrelated, see https://github.com/schrodinger/pymol-open-source/issues/100 CXXFLAGS+= -DMSGPACK_NO_BOOST # in line with MSGPACK_USE_BOOST=OFF in devel/msgpack-cxx .if !exists(/usr/include/omp.h) PYDISTUTILS_CONFIGUREARGS+= --use-openmp=no PYDISTUTILS_BUILDARGS+= --use-openmp=no .endif OPTIONS_SINGLE= GUI OPTIONS_SINGLE_GUI= QT5 TK OPTIONS_DEFAULT= QT5 QT5_USES= pyqt:5 QT5_USE= PYQT=pyqt5:run post-patch-TK-on: @${REINPLACE_CMD} -e ' \ 23s|if not PYQT_NAME:|if False:| ; \ s|from PyQt5 import|from X import|' \ ${WRKSRC}/modules/${PORTNAME}/Qt/__init__.py post-install: @${REINPLACE_CMD} -i '' -e 's|#!/bin/bash|#!/bin/sh|' ${STAGEDIR}${PREFIX}/bin/${PORTNAME} @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/_cmd*.so @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/chempy/champ/_champ*.so .include diff --git a/science/py-pynrrd/Makefile b/science/py-pynrrd/Makefile index 94d793a59ab0..b798992b3df8 100644 --- a/science/py-pynrrd/Makefile +++ b/science/py-pynrrd/Makefile @@ -1,32 +1,32 @@ PORTNAME= pynrrd DISTVERSIONPREFIX= v DISTVERSION= 1.1.3 PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Pure Python module for reading and writing NRRD files WWW= https://pynrrd.readthedocs.io/en/stable/ \ https://github.com/mhe/pynrrd LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=0:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes GH_ACCOUNT= mhe NO_ARCH= yes # tests as of 1.1.3: 159 passed in 3.03s .include diff --git a/science/py-pyprecice/Makefile b/science/py-pyprecice/Makefile index 80bae08c4b44..e2bb2e2cd856 100644 --- a/science/py-pyprecice/Makefile +++ b/science/py-pyprecice/Makefile @@ -1,35 +1,35 @@ PORTNAME= pyprecice DISTVERSIONPREFIX= v DISTVERSION= 3.1.2 PORTREVISION= 2 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Coupling library for partitioned multi-physics simulations WWW= https://precice.org/ LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpi4py>0:net/py-mpi4py@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR} LIB_DEPENDS= libprecice.so:science/precice RUN_DEPENDS= ${PY_DEPENDS} USES= localbase pkgconfig python USE_PYTHON= distutils cython autoplist pytest USE_GITHUB= yes GH_ACCOUNT= precice GH_PROJECT= python-bindings post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cyprecice.cpython-${PYTHON_SUFFIX}.so do-test: @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${PYSETUP} test .include diff --git a/science/py-pyqubo/Makefile b/science/py-pyqubo/Makefile index 19288a73796a..5d4d79883e36 100644 --- a/science/py-pyqubo/Makefile +++ b/science/py-pyqubo/Makefile @@ -1,45 +1,45 @@ PORTNAME= pyqubo DISTVERSION= 1.4.0 PORTREVISION= 4 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DWave: Python DSL for constructing QUBOs from mathematical expressions WWW= https://pyqubo.readthedocs.io/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deprecated>=1.2.10:devel/py-deprecated@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dimod>=0.9.14:science/py-dimod@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dwave-neal>=0.5.7:science/py-dwave-neal@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.15.0:devel/py-six@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}nbsphinx>=0.8.3:textproc/py-nbsphinx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>=0.11.1:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0.36.2:devel/py-wheel@${PY_FLAVOR} \ boost-libs>0:devel/boost-libs \ cimod>0:math/cimod \ cmake:devel/cmake-core \ ninja:devel/ninja \ pybind11>0:devel/pybind11 \ robin-hood-hashing>0:devel/robin-hood-hashing RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}codecov>=2.1.9:devel/py-codecov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}coverage>=4.5.1:devel/py-coverage@${PY_FLAVOR} USES= eigen:3 python USE_PYTHON= distutils cython autoplist unittest USE_GITHUB= yes GH_ACCOUNT= recruit-communications CXXFLAGS+= -I${LOCALBASE}/include/cimod \ -I${LOCALBASE}/include/eigen3 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests .include diff --git a/science/py-pyscf/Makefile b/science/py-pyscf/Makefile index 1877db577d91..3642b355c884 100644 --- a/science/py-pyscf/Makefile +++ b/science/py-pyscf/Makefile @@ -1,50 +1,50 @@ PORTNAME= pyscf DISTVERSIONPREFIX= v DISTVERSION= 2.8.0 PORTREVISION= 3 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for quantum chemistry WWW= https://pyscf.org/ \ https://github.com/pyscf/pyscf LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.7:science/py-h5py@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ cmake:devel/cmake-core \ gmake:devel/gmake LIB_DEPENDS= libcint.so:science/libcint \ libxc.so:science/libxc \ libxcfun.so:science/xcfun RUN_DEPENDS= ${PY_DEPENDS} USES= fortran blaslapack:openblas compiler:c++11-lang python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes POST_PLIST= fix-plist TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/pyscf TEST_ARGS= -c ${WRKSRC}/setup.cfg post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyscf/lib/lib*.so fix-plist: @${REINPLACE_CMD} -e 's|.*pyscf_lib_placeholder.so$$||' ${TMPPLIST} post-test: @${ECHO} "==> simple test ..." @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${FILESDIR}/test.py # tests fail to run: https://github.com/pyscf/pyscf/issues/2601 .include diff --git a/science/py-qcelemental/Makefile b/science/py-qcelemental/Makefile index 64f4711a1a06..663e0c4ee492 100644 --- a/science/py-qcelemental/Makefile +++ b/science/py-qcelemental/Makefile @@ -1,42 +1,42 @@ PORTNAME= qcelemental DISTVERSION= 0.30.1 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Essentials for quantum chemistry WWW= https://github.com/MolSSI/QCElemental LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}poetry-core>0:devel/py-poetry-core@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}importlib-metadata>=4.8:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipykernel>0:devel/py-ipykernel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nglview>=3.0.3:science/py-nglview@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=24.1:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>=0.10.0:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydantic2>=1.8.2:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.9.0:science/py-scipy@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>=4.0.0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}py3Dmol>0:science/py-py3Dmol@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes do-test: @cd ${WRKSRC} && ${SETENV} ${TEST_ENV} pytest -rs --pyargs qcelemental # tests as of 0.29.0: 1 failed, 1191 passed, 2 skipped, 2 xpassed, 1 warning in 12.71s, see https://github.com/MolSSI/QCElemental/issues/380 .include diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile index 07b15e1a043c..1dbb8a659526 100644 --- a/science/py-qiskit/Makefile +++ b/science/py-qiskit/Makefile @@ -1,38 +1,38 @@ PORTNAME= qiskit DISTVERSION= 2.2.1 PORTREVISION= 5 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Open-source SDK for working with quantum computers WWW= https://www.ibm.com/quantum/qiskit \ https://github.com/Qiskit/qiskit LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_i386= compilation fails: error[E0277]: the trait bound `u64: Index` is not satisfied, see https://codeberg.org/sarah-quinones/faer/issues/283 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-rust>0:devel/py-setuptools-rust@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}symengine>0.11:math/py-symengine@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rustworkx>=0.15.0:math/py-rustworkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dill>=0.3:devel/py-dill@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}stevedore>=0:devel/py-stevedore@${PY_FLAVOR} USES= cargo python USE_PYTHON= autoplist distutils pytest USE_GITHUB= yes GH_ACCOUNT= Qiskit BINARY_ALIAS= python3=${PYTHON_CMD} PLIST_FILES+= ${PYTHON_SITELIBDIR}/qiskit/_accelerate.cpython-${PYTHON_SUFFIX}.so CARGO_BUILD= no CARGO_INSTALL= no .include diff --git a/science/py-qspin/Makefile b/science/py-qspin/Makefile index 452723a1eba0..42b10e6e9eb5 100644 --- a/science/py-qspin/Makefile +++ b/science/py-qspin/Makefile @@ -1,23 +1,23 @@ PORTNAME= qspin DISTVERSION= 2.3.3 PORTREVISION= 2 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Learn quantum spin and entanglement WWW= https://bitbucket.org/donald_gavel/qspin LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/science/py-quantities/Makefile b/science/py-quantities/Makefile index 5a8e9ce66c45..3dedb215ec6e 100644 --- a/science/py-quantities/Makefile +++ b/science/py-quantities/Makefile @@ -1,26 +1,26 @@ PORTNAME= quantities DISTVERSION= 0.16.4 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Support for physical quantities with units, based on numpy WWW= https://github.com/python-quantities/python-quantities LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # tests fail to run, see https://github.com/python-quantities/python-quantities/issues/224 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/quantities/tests NO_ARCH= yes # tests as of 0.16.4: 179 passed, 3 xfailed in 3.23s .include diff --git a/science/py-rmsd/Makefile b/science/py-rmsd/Makefile index 009c96d173ec..9dac8b5b3162 100644 --- a/science/py-rmsd/Makefile +++ b/science/py-rmsd/Makefile @@ -1,26 +1,26 @@ PORTNAME= rmsd DISTVERSIONPREFIX= ${PORTNAME}- DISTVERSION= 1.6.3 PORTREVISION= 2 CATEGORIES= science #MASTER_SITES= PYPI # missing test files, see https://github.com/charnley/rmsd/issues/123 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Calculate root-mean-square deviation (RMSD) between coordinate sets WWW= https://github.com/charnley/rmsd LICENSE= BSD2CLAUSE -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist concurrent pytest USE_GITHUB= yes GH_ACCOUNT= charnley # tests as of 1.6.3: 1 failed, 51 passed, 1 skipped in 8.53s, failure due to the missing science/py-qmllib that fails to build .include diff --git a/science/py-scikit-fuzzy/Makefile b/science/py-scikit-fuzzy/Makefile index ddc1db228e46..f73ad18c4ada 100644 --- a/science/py-scikit-fuzzy/Makefile +++ b/science/py-scikit-fuzzy/Makefile @@ -1,30 +1,30 @@ PORTNAME= scikit-fuzzy DISTVERSION= 0.5.0 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Fuzzy logic toolkit for SciPy WWW= https://github.com/scikit-fuzzy/scikit-fuzzy/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=1.9:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.9:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= pep517 autoplist NO_ARCH= yes .include diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile index 5f6b4a043497..9c07669673f5 100644 --- a/science/py-scikit-learn/Makefile +++ b/science/py-scikit-learn/Makefile @@ -1,37 +1,37 @@ PORTNAME= scikit-learn DISTVERSION= 1.8.0 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= scikit_learn-${DISTVERSION} MAINTAINER= wen@FreeBSD.org COMMENT= Machine learning algorithms for python WWW= https://scikit-learn.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}joblib>=1.3.0:devel/py-joblib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.10.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}threadpoolctl>=3.2.0:devel/py-threadpoolctl@${PY_FLAVOR} RUN_DEPENDS:= ${BUILD_DEPENDS} BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}meson-python>=0.17.1:devel/meson-python@${PY_FLAVOR} USES= fortran python localbase shebangfix USE_PYTHON= autoplist cython pep517 pytest TEST_ARGS= sklearn TEST_WRKSRC= ${STAGEDIR}${PYTHON_SITELIBDIR} SHEBANG_FILES= sklearn/_build_utils/version.py post-install: # strip binaries @${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/sklearn/*.cpython*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/sklearn/*/*.cpython*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/sklearn/*/*/*.cpython*.so .include diff --git a/science/py-scikit-sparse/Makefile b/science/py-scikit-sparse/Makefile index a4fba04fe3a0..3912e67fc906 100644 --- a/science/py-scikit-sparse/Makefile +++ b/science/py-scikit-sparse/Makefile @@ -1,37 +1,37 @@ PORTNAME= scikit-sparse DISTVERSIONPREFIX= v DISTVERSION= 0.4.16 PORTREVISION= 3 CATEGORIES= science python #MASTER_SITES= PYPI # missing files under tests/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Sparse matrix package WWW= https://github.com/scikit-sparse/scikit-sparse LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${RUN_DEPENDS} LIB_DEPENDS= libumfpack.so:math/suitesparse-umfpack \ libcholmod.so:math/suitesparse-cholmod -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} USES= fortran python USE_PYTHON= distutils cython autoplist pytest USE_GITHUB= yes CFLAGS+= -I${LOCALBASE}/include/suitesparse LDFLAGS+= -shared TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/sksparse/cholmod*.so # tests as of 0.4.16: 10 passed, 400 warnings in 27.47 .include diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile index 7b127f899173..3dc8d4ddacfb 100644 --- a/science/py-scipy/Makefile +++ b/science/py-scipy/Makefile @@ -1,65 +1,65 @@ PORTNAME= scipy DISTVERSION= 1.11.1 PORTREVISION= 6 PORTEPOCH= 1 CATEGORIES= science python MASTER_SITES= https://docs.scipy.org/doc/scipy-${DISTVERSION}/:doc \ PYPI:source \ SF:source PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${DISTNAME}${EXTRACT_SUFX}:source \ scipy-html-${DISTVERSION}.zip:doc EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} PATCH_SITES= https://github.com/scipy/scipy/commit/ PATCHFILES= ab7d08c6148286059f6498ab5c3070268d13cbd9.patch:-p1 # https://github.com/scipy/scipy/pull/21069 MAINTAINER= python@FreeBSD.org COMMENT= Scientific tools for Python WWW= https://www.scipy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pythran>=0:devel/py-pythran@${PY_FLAVOR} \ unzip>0:archivers/unzip LIB_DEPENDS= libblas.so:math/blas \ libopenblas.so:math/openblas -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}gmpy2>0:math/py-gmpy2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pooch>0:devel/py-pooch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-umfpack>0:math/py-scikit-umfpack@${PY_FLAVOR} USES= compiler:c++14-lang cpe fortran python:3.10-3.12 shebangfix USE_PYTHON= autoplist concurrent cython0 distutils FFLAGS+= -std=legacy LDFLAGS+= -shared PYDISTUTILS_BUILDARGS= --fcompiler=gnu95 PYDISTUTILS_CONFIGUREARGS= --fcompiler=gnu95 PIE_UNSAFE= yes PORTDOCS= * OPTIONS_DEFINE= DOCS post-install: ${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR}/scipy/ -name '*.so' | ${XARGS} ${STRIP_CMD} post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} @${UNZIP_CMD} -d ${STAGEDIR}${DOCSDIR} ${DISTDIR}/scipy-html-${DISTVERSION}.zip @${RM} ${STAGEDIR}${DOCSDIR}/.buildinfo do-test: @cd ${WRKSRC} && ${TOUCH} .coveragerc && ${PYTHON_CMD} runtests.py .include diff --git a/science/py-scoria/Makefile b/science/py-scoria/Makefile index a659ffed8abc..4352ed8e61c2 100644 --- a/science/py-scoria/Makefile +++ b/science/py-scoria/Makefile @@ -1,21 +1,21 @@ PORTNAME= scoria DISTVERSION= 1.0.5 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Lightweight molecule manipulation codebase WWW= https://git.durrantlab.pitt.edu/jdurrant/scoria LICENSE= APACHE20 -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils NO_ARCH= yes .include diff --git a/science/py-sdf/Makefile b/science/py-sdf/Makefile index 2d306975c06d..1874d7edfd05 100644 --- a/science/py-sdf/Makefile +++ b/science/py-sdf/Makefile @@ -1,37 +1,37 @@ PORTNAME= sdf PORTVERSION= 0.1 PORTREVISION= 5 CATEGORIES= science cad python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Simple SDF mesh generation in Python WWW= https://github.com/nschloe/meshio LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}meshio>0:science/py-meshio@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} USE_GITHUB= yes GH_ACCOUNT= fogleman GH_TAGNAME= cee1dac # No release yet USES= python USE_PYTHON= distutils OPTIONS_DEFINE= EXAMPLES PORTEXAMPLES= * NO_ARCH= yes post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples && ${INSTALL_DATA} * ${STAGEDIR}${EXAMPLESDIR}) .include diff --git a/science/py-seekpath/Makefile b/science/py-seekpath/Makefile index 7608706ca15c..d6ebac531bff 100644 --- a/science/py-seekpath/Makefile +++ b/science/py-seekpath/Makefile @@ -1,26 +1,26 @@ PORTNAME= seekpath DISTVERSION= 2.2.0 PORTREVISION= 1 CATEGORIES= science # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Obtain, visualize k-vector coefficients in crystal Brillouin zone WWW= https://github.com/giovannipizzi/seekpath LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>=3.2<4:devel/py-flit-core@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=1.14.1:science/py-spglib@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest NO_ARCH= yes # tests as of 2.2.0: 1 failed, 15 passed, 4 warnings, 19 errors in 2.00s .include diff --git a/science/py-segyio/Makefile b/science/py-segyio/Makefile index 433f9ec05792..eede8cd65602 100644 --- a/science/py-segyio/Makefile +++ b/science/py-segyio/Makefile @@ -1,41 +1,41 @@ PORTNAME= segyio DISTVERSIONPREFIX= v DISTVERSION= 1.9.13 PORTREVISION= 2 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for segyio, the seismic data library WWW= https://github.com/equinor/segyio LICENSE= LGPL3+ BUILD_DEPENDS= cmake:devel/cmake-core \ pybind11>0:devel/pybind11 \ ${PYTHON_PKGNAMEPREFIX}distro>0:sysutils/py-distro@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=0:devel/py-setuptools-scm@${PY_FLAVOR} LIB_DEPENDS= libsegyio.so:science/segyio -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= equinor WRKSRC_SUBDIR= python post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/segyio/_segyio*.so ${PYTHON_CMD} -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${PYTHON_CMD} -O -m compileall -d ${PYTHON_SITELIBDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} pre-test: @cd ${WRKSRC} && ${PYTHON_CMD} ${PYSETUP} build_ext --inplace # tests as of 1.9.13: 208 passed, 8 warnings in 3.65s .include diff --git a/science/py-spglib/Makefile b/science/py-spglib/Makefile index eb1d06645afb..0b6ceb55c477 100644 --- a/science/py-spglib/Makefile +++ b/science/py-spglib/Makefile @@ -1,40 +1,40 @@ PORTNAME= spglib DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 PORTREVISION= 1 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for finding and handling crystal symmetries (python binding) WWW= https://spglib.readthedocs.io/en/stable/ \ https://github.com/spglib/spglib LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyproject-metadata>0:devel/py-pyproject-metadata@${PY_FLAVOR} \ cmake:devel/cmake-core \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_SETUPTOOLS} LIB_DEPENDS= libsymspg.so:science/spglib -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.9.0:devel/py-typing-extensions@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-benchmark>0:devel/py-pytest-benchmark@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest USE_GITHUB= yes CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} MAKE_ENV= SETUPTOOLS_SCM_PRETEND_VERSION=${DISTVERSION} TEST_WRKSRC= ${WRKSRC} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} # tests as of 2.7.0: 3034 passed in 21.77s .include diff --git a/science/py-symfc/Makefile b/science/py-symfc/Makefile index 9b270920dce7..47d139ffec58 100644 --- a/science/py-symfc/Makefile +++ b/science/py-symfc/Makefile @@ -1,34 +1,34 @@ PORTNAME= symfc DISTVERSION= 1.6.1 PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Generate symmetrized force constants WWW= https://github.com/symfc/symfc LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}phono3py>0:science/py-phono3py@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/tests NO_ARCH= yes # tests as of 1.1.5: 21 failed, 36 passed, 22 warnings in 26.89s, see https://github.com/symfc/symfc/issues/133 # tests as of 1.3.1: 26 failed, 41 passed, 27 warnings in 45.46s # tests as of 1.6.1: Tests fail: No such file or directory: 'phono3py_params_Si-111-222-rd.yaml.xz', see https://github.com/symfc/symfc/issues/273 .include diff --git a/science/py-thewalrus/Makefile b/science/py-thewalrus/Makefile index b1d8fa760e11..bed094fb332a 100644 --- a/science/py-thewalrus/Makefile +++ b/science/py-thewalrus/Makefile @@ -1,40 +1,40 @@ PORTNAME= thewalrus DISTVERSIONPREFIX= v DISTVERSION= 0.21.0 PORTREVISION= 2 CATEGORIES= science python #MASTER_SITES= PYPI # doesn't contain tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Open source library for hafnian calculation WWW= https://the-walrus.readthedocs.io/en/latest/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dask>0:devel/py-dask@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numba>0:devel/py-numba@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} TEST_DEPENDS= gmake:devel/gmake \ ${PYTHON_PKGNAMEPREFIX}flaky>=3.7.0:devel/py-flaky@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-randomly>0:devel/py-pytest-randomly@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest USE_GITHUB= yes GH_ACCOUNT= XanaduAI NO_ARCH= yes BINARY_ALIAS= python3=${PYTHON_CMD} do-test: # testsuite fails to run: https://github.com/XanaduAI/thewalrus/issues/344 @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${GMAKE} test .include diff --git a/science/py-trainstation/Makefile b/science/py-trainstation/Makefile index 5b286285b1e7..b7d64b57fc64 100644 --- a/science/py-trainstation/Makefile +++ b/science/py-trainstation/Makefile @@ -1,25 +1,25 @@ PORTNAME= trainstation DISTVERSION= 1.1 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Convenient training of linear models WWW= https://trainstation.materialsmodeling.org/ LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE -xBUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} \ +xBUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest # 10 tests fail, see https://gitlab.com/materials-modeling/trainstation/-/issues/10 NO_ARCH= yes .include diff --git a/science/py-trx-python/Makefile b/science/py-trx-python/Makefile index 96490c4af9cc..abac4bdcec1a 100644 --- a/science/py-trx-python/Makefile +++ b/science/py-trx-python/Makefile @@ -1,37 +1,37 @@ PORTNAME= trx-python # this project is planned to be merged into DIPY (science/py-dipy) DISTVERSION= 0.3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Experiments with new file format for tractography WWW= https://tee-ar-ex.github.io/trx-python/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deepdiff>0:devel/py-deepdiff@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=19.0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=3.4:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PY_SETUPTOOLS} RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} # mistaken dependency, see https://github.com/tee-ar-ex/trx-python/issues/73 TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flake8>=0:devel/py-flake8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-console-scripts>0:devel/py-pytest-console-scripts@${PY_FLAVOR} USES= python USE_PYTHON= pep517 cython autoplist pytest # few tests fail due to missing files #USE_GITHUB= yes #GH_ACCOUNT= tee-ar-ex NO_ARCH= yes TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include diff --git a/science/py-vedo/Makefile b/science/py-vedo/Makefile index e2d5879c6094..6e487091b1f9 100644 --- a/science/py-vedo/Makefile +++ b/science/py-vedo/Makefile @@ -1,39 +1,39 @@ PORTNAME= vedo DISTVERSION= 2025.5.4 PORTREVISION= 2 CATEGORIES= science graphics python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for scientific analysis and visualization of 3D objects WWW= https://vedo.embl.es/ \ https://github.com/marcomusy/vedo LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>0:devel/py-typing-extensions@${PY_FLAVOR} \ vtk${VTK_VER:R}>0:math/vtk${VTK_VER:R} \ bash:shells/bash USES= python shebangfix USE_PYTHON= pep517 concurrent autoplist SHEBANG_GLOB= *.sh TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes do-test: # run some examples as tests .for example in advanced/interpolate_scalar3.py advanced/spline_draw1.py advanced/warp6.py simulations/optics_main3.py @${SETENV} ${TEST_ENV} ${PYTHON_CMD} ${WRKSRC}/examples/${example} .endfor .include <../../math/vtk9/Makefile.version> .include diff --git a/science/py-veusz/Makefile b/science/py-veusz/Makefile index c53154e40a73..6813eaa3b099 100644 --- a/science/py-veusz/Makefile +++ b/science/py-veusz/Makefile @@ -1,39 +1,39 @@ PORTNAME= veusz DISTVERSIONPREFIX= ${PORTNAME}- DISTVERSION= 4.2 PORTREVISION= 1 CATEGORIES= science PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Scientific plotting package WWW= https://veusz.github.io/ \ https://github.com/veusz/veusz LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tomli>0:textproc/py-tomli@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= compiler:c++11-lang python pyqt:6 qt:6 shebangfix USE_GITHUB= yes USE_PYQT= pyqt6 sip:build USE_PYTHON= distutils concurrent autoplist pytest USE_QT= base tools:build SHEBANG_FILES= tests/runselftest.py examples/embedexample.py TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: # strip ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/veusz/helpers/*.so do-test: @cd ${WRKSRC}/tests && ${SETENV} ${TEST_ENV} ./runselftest.py # tests as of 4.2: All tests 76/76 PASSED .include diff --git a/science/pynn/Makefile b/science/pynn/Makefile index 00ae775ae60b..bdbef78a14ea 100644 --- a/science/pynn/Makefile +++ b/science/pynn/Makefile @@ -1,29 +1,29 @@ PORTNAME= pynn PORTVERSION= 0.12.3 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= PyNN-${PORTVERSION} MAINTAINER= wen@FreeBSD.org COMMENT= Simulator-independent language for building neuronal network models WWW= https://neuralensemble.org/PyNN LICENSE= CeCILL LICENSE_NAME= CeCILL Free Software License Version 2.0 LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} NO_ARCH= yes USES= python USE_PYTHON= autoplist distutils PYDISTUTILS_PKGNAME= PyNN .include diff --git a/science/qmcpack/Makefile b/science/qmcpack/Makefile index 3c5daa89e496..bfd7c9141a50 100644 --- a/science/qmcpack/Makefile +++ b/science/qmcpack/Makefile @@ -1,68 +1,68 @@ PORTNAME= qmcpack DISTVERSIONPREFIX= v DISTVERSION= 4.1.0 PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Many-body ab initio Quantum Monte Carlo code for quantum chemistry WWW= https://www.qmcpack.org/ \ https://github.com/QMCPACK/qmcpack LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' .if !exists(/usr/include/omp.h) BROKEN= requires OpenMP support that is missing on this architecture .endif LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libfftw3.so:math/fftw3 \ libhdf5.so:science/hdf5 \ libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libsz.so:science/libaec TEST_DEPENDS= bash:shells/bash USES= cmake:testing compiler:c++17-lang fortran gnome localbase:ldflags pkgconfig python shebangfix USE_GNOME= libxml2 USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} SHEBANG_FILES= src/QMCTools/gpaw4qmcpack.py \ ${NEXUS_PLIST_FILES:C/^/nexus\//} SHEBANG_GLOB= check.sh CMAKE_OFF= BUILD_UNIT_TESTS CMAKE_ARGS= -DFREEBSD_PYTHON_VER=${PYTHON_VER} CMAKE_TESTING_ON= BUILD_UNIT_TESTS # many tests fail, see https://github.com/QMCPACK/qmcpack/issues/4274 PROGS= convert4qmc convertpw4qmc gpaw4qmcpack.py ppconvert qmc-check-affinity qmc-extract-eshdf-kvectors qmc-get-supercell qmcfinitesize qmcpack qmcpack.settings PLIST_FILES= ${PROGS:C/^/bin\//} BINARY_ALIAS= python=${PYTHON_CMD} python3=${PYTHON_CMD} OPTIONS_DEFINE= NEXUS OPTIONS_DEFAULT= NEXUS OPTIONS_SUB= yes NEXUS_DESC= Install Nexus (workflow utility) alongside QMCPACK NEXUS_CMAKE_BOOL= INSTALL_NEXUS -NEXUS_PY_DEPENDS= ${PYNUMPY} \ +NEXUS_PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyscf>0:science/py-pyscf@${PY_FLAVOR} NEXUS_BUILD_DEPENDS= ${NEXUS_PY_DEPENDS} NEXUS_RUN_DEPENDS= ${NEXUS_PY_DEPENDS} NEXUS_PLIST_FILES= bin/eshdf \ bin/nxs-redo \ bin/nxs-sim \ bin/nxs-test \ bin/qdens \ bin/qdens-radial \ bin/qmc-fit \ bin/qmca .include diff --git a/science/rdkit/Makefile b/science/rdkit/Makefile index 4e9e7fb3afad..62246de7dc79 100644 --- a/science/rdkit/Makefile +++ b/science/rdkit/Makefile @@ -1,135 +1,135 @@ PORTNAME= rdkit DISTVERSIONPREFIX= Release_ DISTVERSION= 2025_09_2 PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://github.com/schrodinger/maeparser/archive/:maeparser \ https://github.com/schrodinger/coordgenlibs/archive/:coordgen \ https://codeload.github.com/Glysade/chemdraw/tar.gz/refs/tags/:chemdraw \ https://github.com/Tencent/rapidjson/archive/:rapidjson \ LOCAL/yuri/:font # unstable, changing font file: https://fonts.google.com/download?family=Comic%20Neue&dummy=/:font DISTFILES= v${MAEPARSER_VERSION}.tar.gz:maeparser \ v${COORDGEN_VERSION}.tar.gz:coordgen \ v${CHEMDRAW_VERSION}:chemdraw \ v${RAPIDJSON_VERSION}.tar.gz:rapidjson \ ComicNeue-Regular.ttf:font DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} EXTRACT_ONLY= ${DISTFILES:C/:.*//:Nv*:N*.ttf} MAINTAINER= yuri@FreeBSD.org COMMENT= Collection of cheminformatics and machine-learning software WWW= https://www.rdkit.org/ \ https://github.com/rdkit/rdkit LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt BROKEN_FreeBSD_16_amd64= clang crashes, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=272652 BUILD_DEPENDS= catch>0:devel/catch \ flex:textproc/flex LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libfreetype.so:print/freetype2 USES= bison:build cmake:testing compiler:c++11-lang eigen:3 gnome pkgconfig python USE_GNOME= cairo USE_LDCONFIG= yes USE_GITHUB= yes GH_TUPLE= rareylab:RingDecomposerLib:v1.1.3_rdkit:RingDecomposerLib/External/RingFamilies/RingDecomposerLib GH_TUPLE+= ncbi:pubchem-align3d:daefab3:align3d/External/pubchem_shape/pubchem-align3d \ aantron:better-enums:520d8ee:better_enums/better_enums MAEPARSER_VERSION= 1.3.3 COORDGEN_VERSION= 3.0.2 CHEMDRAW_VERSION= 1.0.11 RAPIDJSON_VERSION= 1.1.0 CMAKE_ON= RDK_BUILD_CAIRO_SUPPORT CMAKE_OFF= RDK_INSTALL_INTREE RDK_USE_FLEXBISON \ RDK_INSTALL_STATIC_LIBS RDK_SWIG_STATIC RDK_PGSQL_STATIC \ RDK_OPTIMIZE_NATIVE \ RDK_BUILD_CPP_TESTS CMAKE_ARGS= -DCATCH_DIR=${LOCALBASE}/include/catch2 CFLAGS+= -D_GNU_SOURCE CXXFLAGS+= -D_GNU_SOURCE #-I${WRKSRC}/better_enums DATADIR= ${PREFIX}/share/RDKit DOCSDIR= ${PREFIX}/share/doc/RDKit # RDBASE=${STAGEDIR}${PREFIX} TEST_ENV= ${MAKE_ENV} \ RDBASE=${WRKSRC} \ PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ LD_LIBRARY_PATH=${STAGEDIR}${PREFIX}/lib PLIST_SUB= SHLIB_VER=${PORTVERSION} OPTIONS_DEFINE= DOCS PGSQL PYTHON OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS DOCS_CMAKE_ON= -DFREEBSD_DOCSDIR:PATH=${DOCSDIR} PGSQL_USES= pgsql PGSQL_DESC= Build the PostgreSQL cartridge PGSQL_CMAKE_BOOL= RDK_BUILD_PGSQL PYTHON_CMAKE_BOOL= RDK_BUILD_PYTHON_WRAPPERS -PYTHON_BUILD_DEPENDS= ${PYNUMPY} +PYTHON_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_LIB_DEPENDS= ${PY_BOOST} -PYTHON_RUN_DEPENDS= ${PYNUMPY} \ +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR} PORTDOCS= * .include .if ${ARCH} == powerpc || ${ARCH} == powerpc64 PLIST_SUB+= LITTLE_ENDIAN="@comment " .else PLIST_SUB+= LITTLE_ENDIAN="" .endif post-extract: #@${MKDIR} ${WRKSRC}/External/rapidjson-1.1.0 #@cd ${WRKSRC}/External/rapidjson-1.1.0 && ${LN} -s ${LOCALBASE}/include/rapidjson include @cd ${WRKSRC}/Data/Fonts && ${CP} ${DISTDIR}/${DIST_SUBDIR}/ComicNeue-Regular.ttf . @${CP} ${WRKSRC}/better_enums/enum.h ${WRKSRC}/Code/RDGeneral post-patch: # replace the URLs for fetched libs with the local file path to the distfiles, so that it can be used without internet access @${REINPLACE_CMD} \ -e 's|https://github.com/schrodinger/maeparser/archive/|file://${DISTDIR}/${DIST_SUBDIR}/|g' \ ${WRKSRC}/External/CoordGen/CMakeLists.txt @${REINPLACE_CMD} \ -e 's|https://github.com/schrodinger/coordgenlibs/archive/|file://${DISTDIR}/${DIST_SUBDIR}/|g' \ ${WRKSRC}/External/CoordGen/CMakeLists.txt @${REINPLACE_CMD} \ -e 's|https://codeload.github.com/Glysade/chemdraw/tar.gz/refs/tags/|file://${DISTDIR}/${DIST_SUBDIR}/|g' \ ${WRKSRC}/External/ChemDraw/CMakeLists.txt @${REINPLACE_CMD} \ -e 's|https://github.com/Tencent/rapidjson/archive/|file://${DISTDIR}/${DIST_SUBDIR}/|g' \ ${WRKSRC}/Code/GraphMol/MolInterchange/CMakeLists.txt pre-build: @${REINPLACE_CMD} \ -e 's|const SizeType length;|SizeType length;|g' \ ${WRKSRC}/External/rapidjson/rapidjson-1.1.0/include/rapidjson/document.h post-install: @${RM} -f ${STAGEDIR}${PREFIX}/lib/libexpat.a post-install-PGSQL-on: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/postgresql/rdkit.so # many tests fail, see https://github.com/rdkit/rdkit/issues/7779 # tests as of 2025_09_1: 65% tests passed, 24 tests failed out of 68 # tests as of 2025_09_2: 63% tests passed, 26 tests failed out of 70 .include diff --git a/science/salome-kernel/Makefile b/science/salome-kernel/Makefile index f92ab9840d67..68465035eac5 100644 --- a/science/salome-kernel/Makefile +++ b/science/salome-kernel/Makefile @@ -1,49 +1,49 @@ PORTNAME= salome-kernel DISTVERSIONPREFIX= V DISTVERSION= 9_11_0 PORTREVISION= 7 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org COMMENT= Salome Project: Multi-physics simulations: Kernel WWW= https://www.salome-platform.org/ \ https://github.com/SalomePlatform/kernel/ LICENSE= LGPL21+ LICENSE_FILE= ${WRKSRC}/COPYING -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}omniorb>0:devel/py-omniorb \ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} \ salome-configuration>0:science/salome-configuration \ swig:devel/swig LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ libomniORB4.so:devel/omniORB RUN_DEPENDS= ${PY_DEPENDS} \ bash:shells/bash USES= cmake compiler:c++11-lang gnome python shebangfix USE_GITHUB= yes GH_ACCOUNT= SalomePlatform GH_PROJECT= kernel USE_GNOME= libxml2 USE_LDCONFIG= yes SHEBANG_FILES= bin/appliskel/.bashrc bin/appliskel/.salome_run \ bin/appliskel/salome bin/appliskel/salome_mesa SHEBANG_GLOB= *.py *.sh CMAKE_ARGS= -DCONFIGURATION_ROOT_DIR=${LOCALBASE}/share/salome/configuration \ -DOMNIORBPY_ROOT_DIR=${LOCALBASE} \ -DPython_EXECUTABLE=${PYTHON_CMD} CMAKE_OFF= SALOME_BUILD_DOC SALOME_BUILD_TESTS CFLAGS+= -DSIZEOF_INT=4 -DSIZEOF_LONG=4 LDFLAGS+= -lexecinfo DATADIR= ${PREFIX}/share/salome .include diff --git a/science/siconos/Makefile b/science/siconos/Makefile index 587760c82cc4..6c36778ceaad 100644 --- a/science/siconos/Makefile +++ b/science/siconos/Makefile @@ -1,53 +1,53 @@ PORTNAME= siconos DISTVERSION= 4.5.0 PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Simulation framework for nonsmooth dynamical systems WWW= https://nonsmooth.gricad-pages.univ-grenoble-alpes.fr/siconos/index.html LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_i386= non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp', see https://github.com/siconos/siconos/issues/416 BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ help2man:misc/help2man LIB_DEPENDS= libBulletCollision.so:devel/bullet \ libcxsparse.so:math/suitesparse-cxsparse \ libgmp.so:math/gmp \ libldl.so:math/suitesparse-ldl \ libopenblas.so:math/openblas TEST_DEPENDS= cppunit>0:devel/cppunit USES= cmake:testing compiler:c++17-lang fortran pkgconfig USE_GITHUB= yes USE_LDCONFIG= yes CMAKE_ARGS= -DFREEBSD_PYTHON_VER=${PYTHON_VER} CMAKE_ON= CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT SICONOS_SYSTEM_WIDE_INSTALL CMAKE_OFF= WITH_GIT WITH_TESTING CMAKE_TESTING_ON= WITH_TESTING # tests are broken, see https://github.com/siconos/siconos/issues/415 CFLAGS+= -DCLOCKTIME -DCLOCKS_PER_SEC=128 # workaround for 'Undefined symbol "ftime"', see https://github.com/siconos/siconos/issues/411 BINARY_ALIAS= python3=${PYTHON_CMD} OPTIONS_DEFINE= PYTHON OPTIONS_DEFAULT= #PYTHON OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= WITH_PYTHON_WRAPPER PYTHON_USES= python PYTHON_USES_OFF= python:build -PYTHON_PY_DEPENDS= ${PYNUMPY} \ +PYTHON_PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} PYTHON_BUILD_DEPENDS= ${PYTHON_PY_DEPENDS} \ swig:devel/swig PYTHON_RUN_DEPENDS= ${PYTHON_PY_DEPENDS} PYTHON_BROKEN= compilation fails, see https://github.com/siconos/siconos/issues/501 .include diff --git a/science/smoldyn/Makefile b/science/smoldyn/Makefile index 55178cea9aca..a564917f61c0 100644 --- a/science/smoldyn/Makefile +++ b/science/smoldyn/Makefile @@ -1,45 +1,45 @@ PORTNAME= smoldyn DISTVERSION= 2.75 CATEGORIES= science MASTER_SITES= https://www.smoldyn.org/ MAINTAINER= yuri@FreeBSD.org COMMENT= Biochemical simulator for molecular diffusion, surface interactions WWW= https://www.smoldyn.org/ LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/License.txt LIB_DEPENDS= libtiff.so:graphics/tiff TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flaky>0:devel/py-flaky@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake:testing compiler:c++11-lang gl localbase:ldflags python:test tar:tgz shebangfix xorg USE_GL= gl glu glut USE_XORG= xi xmu USE_LDCONFIG= yes SHEBANG_GLOB= *.py.in CMAKE_TESTING_ON= OPTION_EXAMPLES # all tests fail to run, see https://github.com/ssandrews/Smoldyn/issues/127 OPTIONS_DEFINE= PYTHON OPTIONS_DEFAULT= # PYTHON Tests ONLY pass when PYTHON=ON despite biology/py-biosimulators-utils being missing OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= OPTION_PYTHON PYTHON_USES= python PYTHON_CMAKE_ON= -DPython3_EXECUTABLE=${PYTHON_CMD} PYTHON_BUILD_DEPENDS= ${PY_SETUPTOOLS} #PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} PYTHON_BROKEN= some python dependencies aren't ported post-extract: # see https://github.com/ssandrews/Smoldyn/issues/127 @${CHMOD} +x ${WRKSRC}/scripts/run_pyscript.py.in do-install-PYTHON-on: # workaround for https://github.com/ssandrews/Smoldyn/issues/129 @cd ${BUILD_WRKSRC}/py && ${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PYTHON_SITELIBDIR} @${RM} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/.DS_Store .include diff --git a/science/tfel-edf/Makefile b/science/tfel-edf/Makefile index 3396673542ce..beaf3e6389bb 100644 --- a/science/tfel-edf/Makefile +++ b/science/tfel-edf/Makefile @@ -1,53 +1,53 @@ PORTNAME= tfel DISTVERSION= 3.2.1-1 PORTREVISION= 10 CATEGORIES= science PKGNAMESUFFIX= -mfront-edf MAINTAINER= thierry@FreeBSD.org COMMENT= Code generation tool dedicated to material knowledge WWW= https://tfel.sourceforge.net/ LICENSE= GPLv3 BUILD_DEPENDS= gnuplot:math/gnuplot \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= ${PY_BOOST} \ libboost_thread.so:devel/boost-libs RUN_DEPENDS= gnuplot:math/gnuplot \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= cmake compiler:c++0x fortran localbase python CONFLICTS= tfel-mfront-3.* OPTIONS_DEFINE= DOCS OPTIONS_DEFAULT=DOCS OPTIONS_SUB= yes WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION:R} CMAKE_ON= enable-aster enable-calculix enable-fortran \ enable-python enable-python-bindings CMAKE_ARGS+= -DCOMPILER_CXXFLAGS="${CXXFLAGS}" -DCOMPILER_FLAGS="${CFLAGS}" USE_LDCONFIG= yes .ifdef PACKAGE_BUILDING CMAKE_ON+= enable-portable-build .endif TEST_TARGET= check .include .include "${.CURDIR}/../../french/aster/bsd.aster.mk" .if ${FORTRAN_DEFAULT} == gfortran && ${GCC_DEFAULT} >= 10 FCFLAGS+= -fallow-argument-mismatch .endif post-install: (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${PYTHONPREFIX_SITELIBDIR:S,${PREFIX}/,,}) (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${PYTHONPREFIX_SITELIBDIR:S,${PREFIX}/,,}) .include diff --git a/science/tfel/Makefile b/science/tfel/Makefile index 6282e35a550c..6570b3866487 100644 --- a/science/tfel/Makefile +++ b/science/tfel/Makefile @@ -1,61 +1,61 @@ PORTNAME= tfel PORTVERSION= 4.0.0 PORTREVISION= 9 CATEGORIES= science MASTER_SITES= SF/${PORTNAME}/ PKGNAMESUFFIX= -mfront MAINTAINER= ports@FreeBSD.org COMMENT= Code generation tool dedicated to material knowledge WWW= https://github.com/thelfer/tfel LICENSE= GPLv3 BUILD_DEPENDS= gnuplot:math/gnuplot RUN_DEPENDS= gnuplot:math/gnuplot USES= cmake compiler:c++0x fortran CONFLICTS_INSTALL= tfel-mfront-edf-3.* OPTIONS_DEFINE= DOCS PYTHON OPTIONS_DEFAULT= DOCS PYTHON OPTIONS_SUB= yes PYTHON_USES= localbase python -PYTHON_BUILD_DEPENDS= ${PYNUMPY} +PYTHON_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_LIB_DEPENDS= ${PY_BOOST} \ libboost_thread.so:devel/boost-libs -PYTHON_RUN_DEPENDS= ${PYNUMPY} +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} PYTHON_CMAKE_BOOL= enable-python enable-python-bindings CMAKE_ON= enable-aster enable-calculix enable-fortran CMAKE_ARGS+= -DCOMPILER_CXXFLAGS="${CXXFLAGS}" -DCOMPILER_FLAGS="${CFLAGS}" PLIST_SUB= VER=${PORTVERSION} USE_LDCONFIG= yes .ifdef PACKAGE_BUILDING CMAKE_ON+= enable-portable-build .endif TEST_TARGET= check .include post-patch: .if ${COMPILER_TYPE} == clang @${REINPLACE_CMD} -e 's|std::unary_function|std::__unary_function|' \ ${WRKSRC}/include/NUMODIS/Math/Utilities.hxx \ ${WRKSRC}/include/TFEL/Math/General/Abs.hxx @${REINPLACE_CMD} -e 's|std::binary_function|std::__binary_function|' \ ${WRKSRC}/include/TFEL/Math/General/AbsCompare.hxx .endif post-install: (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${PYTHONPREFIX_SITELIBDIR:S,${PREFIX}/,,}) (cd ${STAGEDIR}${PREFIX} && ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py \ -d ${PREFIX} -f ${PYTHONPREFIX_SITELIBDIR:S,${PREFIX}/,,}) .include diff --git a/science/trilinos/Makefile b/science/trilinos/Makefile index bf02f46f6ed9..494f20183ea0 100644 --- a/science/trilinos/Makefile +++ b/science/trilinos/Makefile @@ -1,98 +1,98 @@ PORTNAME= trilinos DISTVERSION= 16.2.0 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org COMMENT= Solver for multi-physics engineering and scientific problems WWW= https://trilinos.github.io/ \ https://github.com/trilinos/trilinos LICENSE= BSD3CLAUSE LGPL20 # Trilinos is licensed on a per-package basis. Most packages are under a BSD license, some are published under the (L)GPL. LICENSE_COMB= multi BROKEN_armv6= kokkos assumes a 64-bit build; i.e., 8-byte pointers, but found 4-byte BROKEN_armv7= kokkos assumes a 64-bit build; i.e., 8-byte pointers, but found 4-byte BROKEN_i386= kokkos assumes a 64-bit build; i.e., 8-byte pointers, but found 4-byte BUILD_DEPENDS= bash:shells/bash \ boost-libs>0:devel/boost-libs \ swig:devel/swig \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libblas.so:math/blas \ liblapack.so:math/lapack \ libumfpack.so:math/suitesparse-umfpack RUN_DEPENDS= bash:shells/bash USES= cmake:testing compiler:c++17-lang fortran perl5 python shebangfix USE_LDCONFIG= yes USE_GITHUB= yes GH_PROJECT= Trilinos SHEBANG_FILES= packages/kokkos/bin/kokkos_launch_compiler \ packages/kokkos/bin/nvcc_wrapper \ packages/phalanx/scripts/phalanx_create_evaluator.py CXXFLAGS+= -DBOOST_STACKTRACE_GNU_SOURCE_NOT_REQUIRED # fails otherwise with backtrace-related symbol error explicitly printed by Boost LDFLAGS+= -lexecinfo # only for kokkos (?), to prevent missing symbols CMAKE_OFF= Trilinos_ENABLE_TESTS CMAKE_TESTING_ON= Trilinos_ENABLE_TESTS # tests fail to compile, see https://github.com/trilinos/Trilinos/issues/13922 CONFLICTS= kokkos # installs bundled kokkos, need to figure out how to prevent this CONFLICTS_INSTALL= googletest # see https://github.com/trilinos/Trilinos/issues/11271 ## configure Trilinos # general #CMAKE_ARGS+= -DTrilinos_VERBOSE_CONFIGURE=ON CMAKE_ARGS+= -DCMAKE_INSTALL_PREFIX:PATH=${PREFIX} CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON # package selection CMAKE_ARGS+= -DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON CMAKE_ARGS+= -DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON CMAKE_ARGS+= -DTrilinos_ENABLE_SEACAS:BOOL=OFF # because of pumagon, etc failure (need to retest) CMAKE_ARGS+= -DTrilinos_ENABLE_PyTrilinos:BOOL=OFF # workaround for https://github.com/trilinos/Trilinos/issues/12184 # for Xyce, see https://github.com/Xyce/Xyce/issues/103#issuecomment-2257272140 CMAKE_ON+= Trilinos_ENABLE_Ifpack \ Trilinos_ENABLE_AztecOO \ Trilinos_ENABLE_Amesos \ Trilinos_ENABLE_EpetraExt # parallelism-related CMAKE_ARGS+= -DTrilinos_ENABLE_OpenMP:BOOL=OFF #CMAKE_ARGS+= -DKokkos_ENABLE_Pthread:BOOL=ON #CMAKE_ARGS+= -DTPL_ENABLE_Pthread:BOOL=ON #CMAKE_ARGS+= -DTPL_ENABLE_MPI:BOOL=ON #CMAKE_ARGS+= -DMPI_BASE_DIR:PATH="${LOCALBASE}/mpi/openmpi" #CMAKE_ARGS+= -DMPI_BIN_DIR:PATH="${LOCALBASE}/mpi/openmpi/bin" ## additional features/packages required by Xyce CMAKE_ON+= EpetraExt_BUILD_BTF CMAKE_ON+= EpetraExt_BUILD_EXPERIMENTAL CMAKE_ON+= EpetraExt_BUILD_GRAPH_REORDERINGS #CMAKE_ON+= Teuchos_ENABLE_COMPLEX # this feature is broken in Trilinos CMAKE_ON+= Trilinos_ENABLE_COMPLEX_DOUBLE # Enabling the UMFPACK feature required by the above features. CMAKE_ON+= TPL_ENABLE_UMFPACK CMAKE_ON+= TPL_ENABLE_AMD CMAKE_ARGS+= -DUMFPACK_INCLUDE_DIRS=${LOCALBASE}/include/suitesparse CMAKE_ARGS+= -DTPL_AMD_INCLUDE_DIRS=${LOCALBASE}/include/suitesparse CMAKE_ARGS+= -DAMD_LIBRARY_DIRS=${LOCALBASE}/lib # users: https://duongdo27.github.io/Trilinos/users.html CONFLICTS_INSTALL= googletest # installs files into the same place, problematic file: /usr/local/include/gtest/gtest.h, see https://github.com/trilinos/Trilinos/issues/13929 post-install: # remove MPI headers that it installs @${RM} ${STAGEDIR}${PREFIX}/include/mpi*.h # Tests fail to compile, see https://github.com/trilinos/Trilinos/issues/14748 .include diff --git a/science/ttk/Makefile b/science/ttk/Makefile index 42f9e12a5572..61fef2b9bb1a 100644 --- a/science/ttk/Makefile +++ b/science/ttk/Makefile @@ -1,49 +1,49 @@ PORTNAME= ttk DISTVERSION= 1.3.0 PORTREVISION= 4 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Topology ToolKit: Topological data analysis and visualization WWW= https://topology-tool-kit.github.io \ https://github.com/topology-tool-kit/ttk LICENSE= BSD4CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} BUILD_DEPENDS= ${LOCALBASE}/include/boost/functional/hash.hpp:devel/boost-libs \ cli11>0:devel/cli11 \ exprtk>0:math/exprtk \ spectra>0:math/spectra \ utf8cpp>0:devel/utf8cpp \ websocketpp>0:devel/websocketpp \ ${PY_DEPENDS} BUILD_DEPENDS+= nlohmann-json>0:devel/nlohmann-json # is required by lib/cmake/paraview-5.11/vtk/VTK-vtk-module-find-packages.cmake:1167 BUILD_DEPENDS+= fast_float>0:math/fast_float # attempt to fix build failures triggered by find_package(fastfloat) from paraview's vtk cmake scripts LIB_DEPENDS= libcgraph.so:graphics/graphviz \ libembree3.so:graphics/embree3 \ libfreetype.so:print/freetype2 \ libjsoncpp.so:devel/jsoncpp \ libqhull_r.so:math/qhull \ libvtkRenderingCore-pv${PARAVIEW_VER}.so:science/paraview \ libzfp.so:devel/zfp RUN_DEPENDS= ${PY_DEPENDS} USES= cmake eigen:3 compiler:c++11-lang gl python sqlite xorg USE_GL= glew USE_XORG= x11 USE_GITHUB= yes GH_ACCOUNT= topology-tool-kit CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} CMAKE_OFF= TTK_ENABLE_WEBSOCKETPP # fix build with boost-1.87+ until this is fixed post-stage: ${RM} ${STAGEDIR}${PREFIX}/include/Python.h .include <../../science/paraview/Makefile.version> .include diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile index 568055c2e784..f45195c8e860 100644 --- a/science/v_sim/Makefile +++ b/science/v_sim/Makefile @@ -1,103 +1,103 @@ PORTNAME= v_sim DISTVERSION= 3.9.0 PORTREVISION= 1 CATEGORIES= science MAINTAINER= thierry@FreeBSD.org COMMENT= Visualization of atomic structures WWW= https://gitlab.com/l_sim/v_sim LICENSE= CeCILL LICENSE_NAME= CeCILL LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept BUILD_DEPENDS= p5-XML-LibXML>0:textproc/p5-XML-LibXML \ libarchive>0:archivers/libarchive \ xcrysden:science/xcrysden \ bash:shells/bash LIB_DEPENDS= libgdkglext-x11-1.0.so:x11-toolkits/gtkglext \ libfontconfig.so:x11-fonts/fontconfig \ libopenbabel.so:science/openbabel \ libfreetype.so:print/freetype2 \ libharfbuzz.so:print/harfbuzz \ libyaml.so:textproc/libyaml \ libnetcdf.so:science/netcdf \ libmsym.so:science/libmsym \ libftgl.so:graphics/ftgl \ libxc.so:science/libxc -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ xcrysden:science/xcrysden \ libarchive>0:archivers/libarchive \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} USES= autoreconf blaslapack compiler:c11 fortran gl gmake gnome \ libtool:keepla localbase:ldflags pkgconfig python \ shebangfix tar:bzip2 xorg SHEBANG_GLOB= *.py USE_XORG= x11 USE_GNOME= cairo gtk30 gdkpixbuf intltool introspection pygobject3:run USE_GL= gl glu USE_GITLAB= yes GL_ACCOUNT= l_sim GL_TAGNAME= 9dc8e5a0b2f4e7237ac50a922b87d234ff56a6e5 GNU_CONFIGURE= yes CONFIGURE_SHELL=${LOCALBASE}/bin/bash CONFIGURE_ARGS= --htmldir=${PREFIX}/share/doc --with-openbabel \ --with-netcdf=${LOCALBASE} --with-etsf-file-format \ --with-xsf --with-cube --with-msym=${LOCALBASE} \ --with-msym-inc=-I${LOCALBASE}/include/libmsym \ --with-libxc=${LOCALBASE} --enable-python-module GNU_CONFIGURE_MANPREFIX=${PREFIX}/share CPPFLAGS+= ${CFLAGS} USE_LDCONFIG= yes OPTIONS_DEFINE= DOCS NLS EXAMPLES OPTIONS_SUB= yes .if defined(WITH_DEBUG) CONFIGURE_ARGS+=--enable-debug-messages .endif .include .if ${ARCH:Mamd64*} || ${ARCH:Mpowerpc64*} BUILD_DEPENDS+= abinit:science/abinit RUN_DEPENDS+= abinit:science/abinit CONFIGURE_ARGS+=--with-abinit PLIST_SUB+= AB="" .else PLIST_SUB+= AB="@comment " .endif .if ${PORT_OPTIONS:MNLS} USES+= gettext .else USES+= gettext-tools .endif pre-configure: ${REINPLACE_CMD} -e 's|$${docdir}/examples|${EXAMPLESDIR}|' \ ${WRKSRC}/configure.ac ${REINPLACE_CMD} -e 's|print sys.prefix|print (sys.prefix)|' \ -e 's|print sys.exec_prefix|print (sys.exec_prefix)|' \ ${WRKSRC}/m4/python.m4 pre-configure-NLS-off: ${REINPLACE_CMD} -e '/^ po /d' ${WRKSRC}/Makefile.am pre-configure-DOCS-off: ${REINPLACE_CMD} -e '/^ Documentation/d' ${WRKSRC}/Makefile.am pre-configure-EXAMPLES-off: ${REINPLACE_CMD} -e '/^ examples/d' \ ${WRKSRC}/Makefile.am ${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \ ${WRKSRC}/lib/python/Makefile.am post-install: ${FIND} ${STAGEDIR}${PREFIX}/lib -type f -name "lib*.so.8.0.0" | \ ${XARGS} ${STRIP_CMD} .include diff --git a/science/vmd/Makefile b/science/vmd/Makefile index 6779f3de5c48..818ec2f3855d 100644 --- a/science/vmd/Makefile +++ b/science/vmd/Makefile @@ -1,168 +1,168 @@ PORTNAME= vmd DISTVERSION= 1.9.4 PORTREVISION= 2 DISTVERSIONSUFFIX= a57 CATEGORIES= science graphics python tcl tk MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \ http://www.phoronix-test-suite.com/benchmark-files/:tachyon \ http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \ http://webclu.bio.wzw.tum.de/stride/:stride \ ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride DISTFILES= ${VMD_DIST} \ ${TACHYON_DIST}:tachyon \ ${STRIDE_DIST}:stride MAINTAINER= ports@FreeBSD.org COMMENT= Molecular visualization program WWW= http://www.ks.uiuc.edu/Research/vmd/ LICENSE= VMD BSD3CLAUSE STRIDE LICENSE_COMB= multi ONLY_FOR_ARCHS= amd64 i386 BUILD_DEPENDS= makedepend:devel/makedepend \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfltk.so:x11-toolkits/fltk \ libnetcdf.so:science/netcdf -RUN_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= gl gmake perl5 python shebangfix sqlite tcl tk xorg SHEBANG_FILES= ${WRKDIR}/plugins/topotools/*.tcl \ ${WRKDIR}/plugins/mdff/resetmaps.sh USE_PERL5= build USE_GL= gl glu USE_XORG= x11 LICENSE_FILE_VMD= ${WRKSRC}/LICENSE LICENSE_PERMS_VMD= no-auto-accept LICENSE_NAME_VMD= Visual Molecular Dynamics Software License Agreement LICENSE_DISTFILES_VMD= ${VMD_DIST} LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST} LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept LICENSE_NAME_STRIDE= Stride Copyright Notice LICENSE_DISTFILES_STRIDE=${STRIDE_DIST} CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \ PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \ NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \ NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR} \ TCL_INCLUDE_DIR=${TCL_INCLUDEDIR} \ TCL_LIBRARY_DIR=${LOCALBASE}/lib \ TK_INCLUDE_DIR=${TK_INCLUDEDIR} \ TK_LIBRARY_DIR=${LOCALBASE}/lib CONFIGURE_ARGS= ${VMD_ARCH} OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF NUMPY PYTHON INSTALL_WRKSRC= ${WRKSRC}/src MAKE_ENV= EXPATINC=-I${LOCALBASE}/include \ EXPATLIB=-L${LOCALBASE}/lib \ EXPATLDFLAGS=-lexpat \ EXPATDYNAMIC=1 \ NETCDFINC=-I${LOCALBASE}/include \ NETCDFLIB=-L${LOCALBASE}/lib \ NETCDFLDFLAGS=-lnetcdf \ SQLITEINC=-I${LOCALBASE}/include \ SQLITELIB=-L${LOCALBASE}/lib \ SQLITELDFLAGS=-lsqlite3 \ SQLITEDYNAMIC=1 \ TCLLIB=-L${LOCALBASE}/lib \ TCLINC=-I${TCL_INCLUDEDIR} \ TCLLDFLAGS=-ltcl${TCL_VER:S/.//} \ TKLDFLAGS="-ltk${TK_VER:S/.//} -lX11" VMD_DIST= ${PORTNAME}-${DISTVERSION}${DISTVERSIONSUFFIX}.src.tar.gz TACHYON_DIST= tachyon-0.99b6.tar.gz STRIDE_DIST= stride.tar.gz STRIDE_DOC= stride.doc .include .if !exists(${DISTDIR}/${VMD_DIST}) IGNORE= license restrictions require manual fetching of the distribution\ source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\ with a browser. You will be required to register, log in, and accept\ the University of Illinois agreement before you can download the\ ${VMD_DIST} source. Place this distfile in ${DISTDIR} and try again. .endif .if ${ARCH} == "amd64" VMD_ARCH= FREEBSDAMD64 .else VMD_ARCH= FREEBSD .endif PLIST_SUB+= VMD_ARCH=${VMD_ARCH} do-extract: ${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride ${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR} ${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf ${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib ${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride post-patch: ${REINPLACE_CMD} \ -e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \ -e "s|/usr/local|${LOCALBASE}|g" \ -e "s|-fno-for-scope||g" \ -e "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \ ${WRKSRC}/configure ${REINPLACE_CMD} -e "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile ${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" \ ${WRKSRC}/src/Orbital.C ${REINPLACE_CMD} -E "s/(SHLD[[:space:]]*=[[:space:]]*)gcc/\1${CC}/" \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -E "s/(CC[[:space:]]*=[[:space:]]*)(gcc|cc)/\1${CC}/" \ ${WRKSRC}/lib/stride/Makefile \ ${WRKSRC}/lib/surf/Makefile \ ${WRKSRC}/lib/tachyon/unix/Make-arch \ ${WRKDIR}/plugins/cionize/Makefile.specialbuilds \ ${WRKDIR}/plugins/cionize/Makefile.mine \ ${WRKDIR}/plugins/cionize/Makefile.testing \ ${WRKDIR}/plugins/Make-arch \ ${WRKDIR}/plugins/molfile_plugin/f77/Makefile ${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \ ${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \ ${WRKDIR}/plugins/hesstrans/src/foo/Makefile \ ${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -e "s/return *;/return 0;/g" \ ${WRKSRC}/lib/surf/*.c do-build: ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} bsd -C ${WRKSRC}/lib/tachyon/unix ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins cd ${WRKSRC} && ${SETENV} ${CONFIGURE_ENV} ${CONFIGURE_CMD} ${CONFIGURE_ARGS} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} all -C ${WRKSRC}/src ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} depend -C ${WRKSRC}/lib/surf ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} surf -C ${WRKSRC}/lib/surf ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} -C ${WRKSRC}/lib/stride ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH} post-install: ${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \ ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so .for f in tcl/autopsf1.8/psfcheck.so tcl/hesstrans1.0/hesstrans.so \ tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \ tcl/psfgen2.0/libpsfgen.so tcl/rnaview1.1/rnaview \ tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \ tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \ tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \ tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \ tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \ tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \ tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \ tcl/bossconvert1.0/Topology \ bin/catdcd5.2/catdcd bin/cionize1.0/cionize ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f} .endfor .include diff --git a/science/votca/Makefile b/science/votca/Makefile index 96a50a1b58e5..00c6a4de33b1 100644 --- a/science/votca/Makefile +++ b/science/votca/Makefile @@ -1,78 +1,78 @@ PORTNAME= votca DISTVERSIONPREFIX= v DISTVERSION= 2025.1 PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= CSG and XTP: libraries for atomistic simulations WWW= https://www.votca.org/ \ https://github.com/votca/votca LICENSE= APACHE20 BROKEN_i386= undefined reference to `__atomic_load' # ' PY_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xmltodict>0:devel/py-xmltodict@${PY_FLAVOR} \ rdkit>0:science/rdkit BUILD_DEPENDS= bash:shells/bash \ lmp:science/lammps \ ${PY_DEPENDS} LIB_DEPENDS= libboost_program_options.so:devel/boost-libs \ libecpint.so:science/libecpint \ libexpat.so:textproc/expat2 \ libfftw3.so:math/fftw3 \ libgromacs_d.so:science/gromacs \ libhdf5.so:science/hdf5 \ libint2.so:science/libint2 \ libsz.so:science/libaec \ libxc.so:science/libxc RUN_DEPENDS= bash:shells/bash \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= cmake compiler:c++14-lang eigen:3 perl5 pkgconfig python:run \ shebangfix USE_GITHUB= yes USE_LDCONFIG= yes SHEBANG_GLOB= *.sh *.pl *.py SHEBANG_FILES= csg/scripts/csg_call csg/scripts/csg_inverse \ tools/scripts/votca_compare tools/scripts/votca_help2doc \ xtp/scripts/xtp_update_mapfile xtp/scripts/xtp_basisset xtp/share/benchmark/xtp_benchmark xtp/scripts/xtp_autogen_mapping \ xtp/scripts/xtp_modify_jobfile \ xtp/scripts/xtp_qmmm2qm CXXFLAGS+= -DBOOST_TIMER_ENABLE_DEPRECATED CMAKE_ON= BUILD_XTP \ CMAKE_DISABLE_FIND_PACKAGE_SPHINX CMAKE_OFF= INJECT_MARCH_NATIVE CMAKE_ARGS= -DLOCALBASE=${LOCALBASE} -DPython_EXECUTABLE=${PYTHON_CMD} BINARY_ALIAS= python3=${PYTHON_CMD} OPTIONS_DEFINE= APPS OPTIONS_DEFAULT= APPS OPTIONS_SUB= yes APPS_DESC= Build applications APPS_CMAKE_BOOL= INSTALL_CSGAPPS post-install: # workaround for https://github.com/votca/votca/issues/1173 @${RM} -r ${STAGEDIR}${PREFIX}/lib/python. do-test: # several tests fail, see https://github.com/votca/votca/issues/1098 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DENABLE_TESTING:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test # tests as of 2025.1: 100% tests passed, 0 tests failed out of 249 .include diff --git a/science/wwplot/Makefile b/science/wwplot/Makefile index 36aa16a04c5f..78837d0f7e0c 100644 --- a/science/wwplot/Makefile +++ b/science/wwplot/Makefile @@ -1,34 +1,34 @@ PORTNAME= wwplot DISTVERSIONPREFIX= v DISTVERSION= 1.0.1 PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Plotting tool for experimental physics classes WWW= https://github.com/wwmm/wwplot LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} \ qt6-base>0:devel/qt6-base PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyside6>0:devel/pyside6@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= desktop-file-utils gettext meson python shebangfix USE_GITHUB= yes GH_ACCOUNT= wwmm SHEBANG_FILES= wwplot.in NO_ARCH= yes post-patch: @${REINPLACE_CMD} "s|find_installation('python3',|find_installation('python${PYTHON_VER}',|" ${WRKSRC}/meson.build .include diff --git a/science/yoda/Makefile b/science/yoda/Makefile index 5e1c0e4dba01..19a7f8e064e8 100644 --- a/science/yoda/Makefile +++ b/science/yoda/Makefile @@ -1,56 +1,56 @@ PORTNAME= yoda DISTVERSION= 2.0.2 CATEGORIES= science MASTER_SITES= https://yoda.hepforge.org/downloads/ DISTNAME= ${PORTNAME:tu}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Particle physics package with classes for data analysis, histogramming WWW= https://yoda.hepforge.org/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING TEST_DEPENDS= bash:shells/bash \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} USES= compiler:c++11-lang gettext-runtime gmake libtool shebangfix GNU_CONFIGURE= yes USE_LDCONFIG= yes SHEBANG_GLOB= *.py *.sh TEST_TARGET= check # doesn't report summary in the end, see https://gitlab.com/hepcedar/yoda/-/issues/49 PLIST_SUB= VERSION=${PORTVERSION} OPTIONS_DEFINE= PYTHON OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes PYTHON_USES= python PYTHON_USE= PYTHON=cython PYTHON_CONFIGURE_ENABLE= pyext PYTHON_MAKE_ENV= PYTHON_VERSION=${PYTHON_VER} PYTHON=${PYTHON_CMD} PYTHON_VARS= SHEBANG_FILES="bin/${PORTNAME}*" \ BINARY_ALIAS="python=${PYTHON_CMD}" TEST_ENV= ${MAKE_ENV} PATH=${STAGEDIR}${PREFIX}/bin:${PATH} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} .include .if !${PORT_OPTIONS:MPYTHON} USES+= python:test .endif post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libYODA.so post-install-PYTHON-on: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*.so post-install-PYTHON-off: @${RM} -r ${STAGEDIR}${PREFIX}/share/${PORTNAME:tu} .include diff --git a/textproc/py-gensim/Makefile b/textproc/py-gensim/Makefile index 3818d39dee30..18be9e023d90 100644 --- a/textproc/py-gensim/Makefile +++ b/textproc/py-gensim/Makefile @@ -1,36 +1,36 @@ PORTNAME= gensim DISTVERSION= 4.3.3 PORTREVISION= 2 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python framework for fast Vector Space Modelling WWW= https://radimrehurek.com/gensim/ LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.7.0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}smart-open>=1.8.1:net/py-smart-open@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}testfixtures>0:devel/py-testfixtures@${PY_FLAVOR} USES= compiler:c++11-lang python USE_PYTHON= autoplist cython0 pep517 pytest # tests fail unde PyTest, see https://github.com/RaRe-Technologies/gensim/issues/3561 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} TEST_WRKSRC= ${WRKSRC}/gensim/test # python setup.py build_ext --inplace xPYDISTUTILS_BUILD_TARGET= build_ext post-install: ${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name "*.so" | ${XARGS} ${STRIP_CMD} .include diff --git a/textproc/py-langid/Makefile b/textproc/py-langid/Makefile index e02a82246e67..f6893cec77dd 100644 --- a/textproc/py-langid/Makefile +++ b/textproc/py-langid/Makefile @@ -1,32 +1,32 @@ PORTNAME= langid DISTVERSION= 1.1.6-20170715 PORTREVISION= 3 CATEGORIES= textproc devel python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Standalone Language Identification (LangID) tool WWW= https://github.com/saffsd/langid.py LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USE_GITHUB= yes GH_ACCOUNT= saffsd GH_PROJECT= ${PORTNAME}.py GH_TAGNAME= 4153583 USES= python shebangfix USE_PYTHON= distutils SHEBANG_GLOB= *.py NO_ARCH= yes post-extract: ${MKDIR} ${WRKDIR}/unsupported-Python-2.7 ${MV} ${WRKSRC}/langid/train ${WRKDIR}/unsupported-Python-2.7 .include diff --git a/textproc/py-pdf2docx/Makefile b/textproc/py-pdf2docx/Makefile index e6cdc0661e60..f95542682301 100644 --- a/textproc/py-pdf2docx/Makefile +++ b/textproc/py-pdf2docx/Makefile @@ -1,30 +1,30 @@ PORTNAME= pdf2docx DISTVERSION= 0.5.8 PORTREVISION= 3 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Library and applicaton to convert pdf to docx WWW= https://github.com/dothinking/pdf2docx LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fire>=0.3.0:devel/py-fire@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyMuPDF>=1.19.0:print/py-PyMuPDF@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}fonttools>=4.24.0:print/py-fonttools@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-docx>=0.8.10:textproc/py-python-docx@${PY_FLAVOR} \ opencv>0:graphics/opencv BUILD_DEPENDS= ${PY_DEPENDS} \ ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} RUN_DEPENDS= ${PY_DEPENDS} USES= python USE_PYTHON= distutils concurrent autoplist pytest # 2 tests fail, see https://github.com/ArtifexSoftware/pdf2docx/issues/276 NO_ARCH= yes .include diff --git a/textproc/py-python-lsp-server/Makefile b/textproc/py-python-lsp-server/Makefile index e0a571ce3be8..1ac4df951938 100644 --- a/textproc/py-python-lsp-server/Makefile +++ b/textproc/py-python-lsp-server/Makefile @@ -1,68 +1,68 @@ PORTNAME= python-lsp-server PORTVERSION= 1.12.2 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${PORTNAME:S/-/_/g}-${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Python implementation of the Language Server Protocol WWW= https://github.com/python-lsp/python-lsp-server LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}toml>0:textproc/py-toml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}autopep8>0:textproc/py-autopep8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}docstring-to-markdown>0:textproc/py-docstring-to-markdown@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flake8>0:devel/py-flake8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}importlib-metadata>0:devel/py-importlib-metadata@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>0:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mccabe>0:devel/py-mccabe@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pluggy>0:devel/py-pluggy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pycodestyle>0:devel/py-pycodestyle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pydocstyle>0:devel/py-pydocstyle@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyflakes>0:devel/py-pyflakes@${PY_FLAVOR} \ pylint${PYTHON_PKGNAMESUFFIX}>0:devel/pylint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-lsp-jsonrpc>0:textproc/py-python-lsp-jsonrpc@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rope>0:devel/py-rope@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruff>0:devel/py-ruff@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ujson>0:devel/py-ujson@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}whatthepatch>0:textproc/py-whatthepatch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yapf>0:textproc/py-yapf@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}coverage>=0:devel/py-coverage@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flaky>=3.4.0:devel/py-flaky@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}isort>0:devel/py-isort@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}jedi>0:devel/py-jedi@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ pylint${PYTHON_PKGNAMESUFFIX}>0:devel/pylint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-isort>0:devel/py-pytest-isort@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}qt5-pyqt>0:devel/py-qt5-pyqt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}rope>0:devel/py-rope@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}whatthepatch>0:textproc/py-whatthepatch@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yapf>0:textproc/py-yapf@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} ### Test core dumps at # python_lsp_server-1.12.0/test/plugins/test_autoimport.py:l277ff # if math/openblas is built with option INTERFACE64=ON (nondefault)! # # make test: 5 failed, 185 passed, 8 skipped, 10 warnings USES= python USE_PYTHON= autoplist concurrent pep517 pytest NO_ARCH= yes WRKSRC= ${WRKDIR}/${DISTFILES:R:R} TEST_USES= qt:5 TEST_USE_PYQT= pyqt5:test TEST_USE_QT= testlib .include diff --git a/textproc/py-rouge-score/Makefile b/textproc/py-rouge-score/Makefile index ac4dc84749b0..04345fefff6d 100644 --- a/textproc/py-rouge-score/Makefile +++ b/textproc/py-rouge-score/Makefile @@ -1,27 +1,27 @@ PORTNAME= rouge-score DISTVERSION= 0.1.2 PORTREVISION= 1 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Package for text analysis and normalization WWW= https://github.com/google-research/google-research/tree/master/rouge LICENSE= APACHE20 RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}absl-py>=0:devel/py-absl-py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nltk>=0:textproc/py-nltk@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.14.0:devel/py-six@${PY_FLAVOR} USES= python USE_PYTHON= distutils autoplist pytest NO_ARCH= yes # tests fail because of missing testdata folder .include diff --git a/textproc/py-textdistance/Makefile b/textproc/py-textdistance/Makefile index f4d44f50aab1..6d37bf5e0016 100644 --- a/textproc/py-textdistance/Makefile +++ b/textproc/py-textdistance/Makefile @@ -1,28 +1,28 @@ PORTNAME= textdistance PORTVERSION= 4.6.3 PORTREVISION= 1 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= rhurlin@FreeBSD.org COMMENT= Comparing distance between two or more sequences by many algorithms WWW= https://github.com/life4/textdistance LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}flake8>0:devel/py-flake8@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hypothesis>0:devel/py-hypothesis@${PY_FLAVOR} USES= python # Tests (18 failed, 180 passed) # tests/test_external.py: RuntimeError (Levenshtein, DamerauLevenshtein, and Hamming) USE_PYTHON= autoplist concurrent pep517 pytest NO_ARCH= yes .include diff --git a/textproc/py-wordcloud/Makefile b/textproc/py-wordcloud/Makefile index 770c7a5333e8..a3bff40986e9 100644 --- a/textproc/py-wordcloud/Makefile +++ b/textproc/py-wordcloud/Makefile @@ -1,33 +1,33 @@ PORTNAME= wordcloud DISTVERSION= 1.9.4 PORTREVISION= 3 CATEGORIES= textproc python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= thierry@FreeBSD.org COMMENT= Little word cloud generator in Python WWW= https://amueller.github.io/word_cloud/ LICENSE= MIT -BUILD_DEPENDS= ${PYNUMPY} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYNUMPY} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} USES= python USE_PYTHON= cython pep517 PLIST_SUB+= VER=${PORTVERSION} .if !defined(WITH_DEBUG) LDFLAGS+= -s .endif .include diff --git a/www/py-bokeh/Makefile b/www/py-bokeh/Makefile index 6ef2c8e6e2bf..cfc98e756c26 100644 --- a/www/py-bokeh/Makefile +++ b/www/py-bokeh/Makefile @@ -1,30 +1,30 @@ PORTNAME= bokeh PORTVERSION= 2.4.3 PORTREVISION= 6 CATEGORIES= www python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= pkubaj@FreeBSD.org COMMENT= Interactive Web Plotting for Python WWW= https://bokeh.pydata.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}Jinja2>=2.7:devel/py-Jinja2@${PY_FLAVOR} \ - ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=16.8:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.1:devel/py-python-dateutil@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}pyyaml>=3.10:devel/py-pyyaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>=1.5.2:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tornado>=5:www/py-tornado@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=3.7.4:devel/py-typing-extensions@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils concurrent NO_ARCH= yes .include diff --git a/x11/py-xdot/Makefile b/x11/py-xdot/Makefile index db1744024166..7568297b2073 100644 --- a/x11/py-xdot/Makefile +++ b/x11/py-xdot/Makefile @@ -1,25 +1,25 @@ PORTNAME= xdot DISTVERSION= 1.6 PORTREVISION= 1 CATEGORIES= x11 python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= atanubiswas484@gmail.com COMMENT= Interactive viewer for Graphviz dot files WWW= https://pypi.org/project/xdot/ \ https://github.com/jrfonseca/xdot.py/ LICENSE= LGPL3+ LICENSE_FILE= ${WRKSRC}/LICENSE.txt RUN_DEPENDS= dot:graphics/graphviz \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} USES= gnome python USE_GNOME= cairo gtk30 pygobject3 USE_PYTHON= autoplist distutils NO_ARCH= yes .include