diff --git a/science/opensim-core/Makefile b/science/opensim-core/Makefile index 495d4f758a0c..5ebf9de47095 100644 --- a/science/opensim-core/Makefile +++ b/science/opensim-core/Makefile @@ -1,61 +1,67 @@ PORTNAME= OpenSim -DISTVERSION= 4.1 -PORTREVISION= 12 +DISTVERSION= 4.6 CATEGORIES= science PKGNAMESUFFIX= -core MAINTAINER= yuri@FreeBSD.org COMMENT= Software for modeling of musculoskeletal structures WWW= https://opensim.stanford.edu/ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -DEPRECATED= Depends on expired devel/swig40 -EXPIRATION_DATE=2026-09-30 - BUILD_DEPENDS= bash:shells/bash -LIB_DEPENDS= libdocopt.so:devel/docopt.cpp \ +LIB_DEPENDS= libfmt.so:devel/libfmt \ + libipopt.so:math/ipopt \ + libcasadi.so:math/casadi \ + libspdlog.so:devel/spdlog \ + libdocopt.so:devel/docopt.cpp \ libSimTKcommon.so:science/simbody +TEST_DEPENDS= catch2>0:devel/catch2 -USES= blaslapack:openblas cmake compiler:c++11-lib fortran gl shebangfix xorg # fortran only for simbody/openblas +USES= blaslapack:openblas cmake compiler:c++20-lang fortran gl pkgconfig shebangfix xorg # fortran only for simbody/openblas SHEBANG_FILES= Applications/opensim-install-command-line.sh USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl}-org GH_PROJECT= ${PORTNAME:tl}-core USE_GL= gl glu glut -JAVA_VERSION= 8 +JAVA_VERSION= 25 USE_XORG= xi xmu USE_LDCONFIG= yes +BINARY_ALIAS= git=false CXXFLAGS+= -I${LOCALBASE}/include/docopt CONFIGURE_ENV+= SIMBODY_HOME=${LOCALBASE} -CMAKE_OFF= OPENSIM_COPY_DEPENDENCIES DO_TESTING +CMAKE_OFF= DO_TESTING OPTIONS_DEFINE= PYTHON JAVA DOCS OPTIONS_DEFAULT= PYTHON JAVA OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= BUILD_PYTHON_WRAPPING +PYTHON_CMAKE_OFF= OPENSIM_COPY_DEPENDENCIES PYTHON_USES= python -PYTHON_BUILD_DEPENDS= swig40:devel/swig40 -PYTHON_BINARY_ALIAS= swig=swig40 +PYTHON_BUILD_DEPENDS= swig:devel/swig \ + ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} +PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} JAVA_CMAKE_BOOL= BUILD_JAVA_WRAPPING -JAVA_CMAKE_ON= -DJAVA_AWT_LIBRARY=${LOCALBASE}/openjdk8/jre/lib/amd64/libawt.so \ - -DJAVA_JVM_LIBRARY=${LOCALBASE}/openjdk8/jre/lib/amd64/server/libjvm.so \ - -DJAVA_INCLUDE_PATH=${LOCALBASE}/openjdk8/include +JAVA_CMAKE_OFF= OPENSIM_COPY_DEPENDENCIES +JAVA_CMAKE_ON= -DJAVA_AWT_LIBRARY=${JAVA_HOME}/lib/libawt.so \ + -DJAVA_JVM_LIBRARY=${JAVA_HOME}/lib/server/libjvm.so \ + -DJAVA_INCLUDE_PATH=${JAVA_HOME}/include JAVA_USES= java -JAVA_BUILD_DEPENDS= swig40:devel/swig40 -JAVA_BINARY_ALIAS= swig=swig40 +JAVA_BUILD_DEPENDS= swig:devel/swig +DOCS_BUILD_DEPENDS= pdflatex:print/tex-formats DOCS_CMAKE_BOOL= INSTALL_DOCS +DOCS_CMAKE_OFF= OPENSIM_DOXYGEN_USE_MATHJAX PORTDOCS= * do-test: # 4 testcases are known to fail: https://github.com/opensim-org/opensim-core/issues/2379 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DDO_TESTING=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include diff --git a/science/opensim-core/distinfo b/science/opensim-core/distinfo index c0c72f5b290d..37e33c2d8ebf 100644 --- a/science/opensim-core/distinfo +++ b/science/opensim-core/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1580791628 -SHA256 (opensim-org-opensim-core-4.1_GH0.tar.gz) = 4cd301f6e2cf3a50af2491dd002f1701c33d89e4085fe7bb7dcfacc5c7c92691 -SIZE (opensim-org-opensim-core-4.1_GH0.tar.gz) = 47951542 +TIMESTAMP = 1785095678 +SHA256 (opensim-org-opensim-core-4.6_GH0.tar.gz) = 759ba196e6a744996fed3f19103bf0d2d9906d2233441f35ffbba231ceca7c21 +SIZE (opensim-org-opensim-core-4.6_GH0.tar.gz) = 43342662 diff --git a/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt b/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt deleted file mode 100644 index bb103041fd46..000000000000 --- a/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt +++ /dev/null @@ -1,11 +0,0 @@ ---- Applications/opensim-cmd/CMakeLists.txt.orig 2018-11-15 17:30:25 UTC -+++ Applications/opensim-cmd/CMakeLists.txt -@@ -20,7 +20,7 @@ OpenSimAddApplication(NAME opensim-cmd - parse_arguments.h - ) - --target_link_libraries(opensim-cmd docopt_s) -+target_link_libraries(opensim-cmd docopt) - - if(BUILD_TESTING) - subdirs(test) diff --git a/science/opensim-core/files/patch-Bindings-common.i b/science/opensim-core/files/patch-Bindings-common.i deleted file mode 100644 index 0a87dcf3dce2..000000000000 --- a/science/opensim-core/files/patch-Bindings-common.i +++ /dev/null @@ -1,14 +0,0 @@ ---- Bindings/common.i.orig 2020-02-01 04:17:56 UTC -+++ Bindings/common.i -@@ -353,9 +353,11 @@ DATATABLE_CLONE(double, SimTK::Rotation_) - - %include - %template(StdVectorEvent) std::vector; -+/* - %template(StdMapStringTimeSeriesTableVec3) - std::map>>; -+*/ - %shared_ptr(OpenSim::DataAdapter) - %shared_ptr(OpenSim::FileAdapter) - %shared_ptr(OpenSim::DelimFileAdapter) diff --git a/science/opensim-core/files/patch-CMakeLists.txt b/science/opensim-core/files/patch-CMakeLists.txt index 7a2988a5e0ed..0d6c3f17f7b2 100644 --- a/science/opensim-core/files/patch-CMakeLists.txt +++ b/science/opensim-core/files/patch-CMakeLists.txt @@ -1,23 +1,116 @@ ---- CMakeLists.txt.orig 2018-11-12 23:49:48 UTC +--- CMakeLists.txt.orig 2026-06-18 22:26:24 UTC +++ CMakeLists.txt -@@ -766,8 +766,10 @@ endif(WIN32) +@@ -789,13 +789,6 @@ if(OPENSIM_WITH_CASADI) + # Copy CasADi into our installation. + OpenSimCopyDependencyDLLsForWin(DEP_NAME casadi + DEP_BIN_DIR "${CASADI_BIN_DIR}") +- if(OPENSIM_COPY_DEPENDENCIES AND NOT WIN32) +- # OpenSimCopyDependencyDLLsForWin() only copies DLLs for Windows, but +- # we still need the CasADi shared libraries on other platforms. +- install(DIRECTORY "${CASADI_CMAKE_DIR}/../../../" +- DESTINATION "${CMAKE_INSTALL_PREFIX}/${OPENSIM_INSTALL_CASADIDIR}" +- USE_SOURCE_PERMISSIONS) +- endif() + endif() + + # IPOPT +@@ -837,23 +830,6 @@ if (OPENSIM_WITH_CASADI) + ${libquadmath_name} + ${libgcc_name} + DESTINATION ${CMAKE_INSTALL_LIBDIR}) +- elseif(OPENSIM_COPY_DEPENDENCIES) +- get_filename_component(gcc_libdir "${pkgcfg_lib_IPOPT_gfortran}" DIRECTORY) +- +- file(GLOB gfortran "${gcc_libdir}/../../../x86_64-linux-gnu/libgfortran*.so*") +- file(GLOB quadmath "${gcc_libdir}/../../../x86_64-linux-gnu/libquadmath*.so*") +- +- install(FILES +- ${IPOPT_LIBDIR}/libipopt.so.3.14.16 +- ${IPOPT_LIBDIR}/libipopt.so.3 +- ${IPOPT_LIBDIR}/libipopt.so +- ${IPOPT_LIBDIR}/libcoinmumps.so.3.0.5 +- ${IPOPT_LIBDIR}/libcoinmumps.so.3 +- ${IPOPT_LIBDIR}/libcoinmumps.so +- ${IPOPT_LIBDIR}/libmetis.so +- ${gfortran} +- ${quadmath} +- DESTINATION ${CMAKE_INSTALL_LIBDIR}) + endif() + if(BUILD_PYTHON_WRAPPING AND OPENSIM_PYTHON_STANDALONE) + OpenSimInstallDependencyLibraries(ipopt "${IPOPT_LIBDIR}" +@@ -908,40 +884,6 @@ if(${OPENSIM_COPY_DEPENDENCIES}) + # folders; we would prefer to only copy to the former, but + # SimbodyTargets-*.cmake expect dlls in sdk/Simbody/bin. In the future, + # we can edit the *.cmake files to no longer expect these DLLs. +- else() +- # We would have liked to use install(DIRECTORY) on UNIX, but the +- # dependencies may be installed in system-wide locations and we don't +- # want to copy extraneous files/directories; install(DIRECTORY) creates +- # a directory in DESTINATION for *every* directory in DIRECTORY, even +- # if we do not want to copy any files from some of the directories in +- # DIRECTORY. +- +- # include +- file(RELATIVE_PATH install_simbodyincludedir +- "${Simbody_ROOT_DIR}" "${Simbody_INCLUDE_DIR}") +- install(DIRECTORY "${Simbody_INCLUDE_DIR}/" +- DESTINATION "${OPENSIM_INSTALL_SIMBODYDIR}/${install_simbodyincludedir}") +- +- # lib (and cmake, pkgconfig) +- file(RELATIVE_PATH install_simbodylibdir +- "${Simbody_ROOT_DIR}/" "${Simbody_LIB_DIR}/") +- file(GLOB_RECURSE simbody_desired_lib_files +- RELATIVE "${Simbody_LIB_DIR}" +- "${Simbody_LIB_DIR}/*SimTK*" "${Simbody_LIB_DIR}/*Simbody*.cmake" +- "${Simbody_LIB_DIR}/*SampleCMakeLists.txt*") +- foreach(simbody_lib_file ${simbody_desired_lib_files}) +- get_filename_component(subdir "${simbody_lib_file}" DIRECTORY) +- install(FILES "${Simbody_LIB_DIR}/${simbody_lib_file}" +- DESTINATION "${OPENSIM_INSTALL_SIMBODYDIR}/${install_simbodylibdir}/${subdir}") +- endforeach() +- +- # simbody-visualizer +- file(RELATIVE_PATH install_simbodyvizdir +- "${Simbody_ROOT_DIR}" "${Simbody_VIZ_DIR}") +- install(DIRECTORY "${Simbody_VIZ_DIR}/" +- DESTINATION "${OPENSIM_INSTALL_SIMBODYDIR}/${install_simbodyvizdir}" +- USE_SOURCE_PERMISSIONS +- FILES_MATCHING PATTERN "*simbody-visualizer*") + endif() + + # EZC3D +@@ -953,10 +895,6 @@ if(${OPENSIM_COPY_DEPENDENCIES}) + DESTINATION "${CMAKE_INSTALL_LIBDIR}") + endif() + +- # spdlog +- # ------ +- install(DIRECTORY "${spdlog_DIR}/../../../" +- DESTINATION "${OPENSIM_INSTALL_SPDLOGDIR}") + endif() + + if(BUILD_PYTHON_WRAPPING AND OPENSIM_PYTHON_STANDALONE) +@@ -976,8 +914,10 @@ endif(WIN32) ## The following are required to uses Dart and the Cdash dashboard per Jesse -enable_testing() -include(CTest) +if (DO_TESTING) + enable_testing() + include(CTest) +endif() # Sets the number of concurrent jobs that testing can use. if(MSVC OR XCODE) -@@ -834,4 +836,6 @@ endif() +@@ -1044,7 +984,9 @@ add_subdirectory(cmake) add_subdirectory(Bindings) add_subdirectory(cmake) -add_subdirectory(doc) +if (INSTALL_DOCS) + add_subdirectory(doc) +endif() + + # Print a list of the dependencies that were found, and the features the user + # chose. diff --git a/science/opensim-core/files/patch-OpenSim_Common_Array.h b/science/opensim-core/files/patch-OpenSim_Common_Array.h new file mode 100644 index 000000000000..403672edeada --- /dev/null +++ b/science/opensim-core/files/patch-OpenSim_Common_Array.h @@ -0,0 +1,12 @@ +--- OpenSim/Common/Array.h.orig 2026-06-18 22:26:24 UTC ++++ OpenSim/Common/Array.h +@@ -35,7 +35,8 @@ + #include + #include + #include +-#include ++// On FreeBSD fmt is not bundled with spdlog ++#include + #include + #include + #include diff --git a/science/opensim-core/files/patch-OpenSim_Common_IO.cpp b/science/opensim-core/files/patch-OpenSim_Common_IO.cpp index 67223730d0c3..4ea73ad9b90a 100644 --- a/science/opensim-core/files/patch-OpenSim_Common_IO.cpp +++ b/science/opensim-core/files/patch-OpenSim_Common_IO.cpp @@ -1,38 +1,11 @@ ---- OpenSim/Common/IO.cpp.orig 2018-11-15 09:02:08 UTC +--- OpenSim/Common/IO.cpp.orig 2026-06-18 22:26:24 UTC +++ OpenSim/Common/IO.cpp -@@ -33,7 +33,7 @@ - #include - - #include "IO.h" +@@ -37,7 +37,7 @@ + #include + #include + #include -#if defined(__linux__) || defined(__APPLE__) +#if defined(__linux__) || defined(__APPLE__) || defined(__FreeBSD__) #include #include #elif defined(_MSC_VER) -@@ -476,7 +476,7 @@ int IO:: - makeDir(const string &aDirName) - { - --#if defined __linux__ || defined __APPLE__ -+#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ - return mkdir(aDirName.c_str(),S_IRWXU); - #else - return _mkdir(aDirName.c_str()); -@@ -491,7 +491,7 @@ int IO:: - chDir(const string &aDirName) - { - --#if defined __linux__ || defined __APPLE__ -+#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ - return chdir(aDirName.c_str()); - #else - return _chdir(aDirName.c_str()); -@@ -507,7 +507,7 @@ string IO:: - getCwd() - { - char buffer[PATH_MAX]; --#if defined __linux__ || defined __APPLE__ -+#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ - auto ptr = getcwd(buffer, PATH_MAX); (void)ptr; - #else - _getcwd(buffer, PATH_MAX); diff --git a/science/opensim-core/files/patch-OpenSim_Common_Logger.cpp b/science/opensim-core/files/patch-OpenSim_Common_Logger.cpp new file mode 100644 index 000000000000..be6195b12437 --- /dev/null +++ b/science/opensim-core/files/patch-OpenSim_Common_Logger.cpp @@ -0,0 +1,12 @@ +--- OpenSim/Common/Logger.cpp.orig 2026-06-18 22:26:24 UTC ++++ OpenSim/Common/Logger.cpp +@@ -26,7 +26,8 @@ + #include "IO.h" // for IO + #include "LogSink.h" // for LogSink + #include // for remove +-#include // for format ++// On FreeBSD fmt is not bundled with spdlog ++#include // for format + #include // for basic_file_sink_mt, bas... + #include // for sink + #include // for stdout_color_mt diff --git a/science/opensim-core/files/patch-OpenSim_Common_Logger.h b/science/opensim-core/files/patch-OpenSim_Common_Logger.h new file mode 100644 index 000000000000..489f789b7303 --- /dev/null +++ b/science/opensim-core/files/patch-OpenSim_Common_Logger.h @@ -0,0 +1,14 @@ +--- OpenSim/Common/Logger.h.orig 2026-06-18 22:26:24 UTC ++++ OpenSim/Common/Logger.h +@@ -25,8 +25,9 @@ + #include "osimCommonDLL.h" // for OSIMCOMMON_API + #include // for shared_ptr + #include // for spdlog::format_string_t +-#include // for formatter +-#include // for ostream_formatter ++// On FreeBSD fmt is not bundled with spdlog ++#include // for formatter ++#include // for ostream_formatter + #include // for logger + #include // for basic_string, string + #include // for std::string_view diff --git a/science/opensim-core/files/patch-buildWheel.cmake b/science/opensim-core/files/patch-buildWheel.cmake new file mode 100644 index 000000000000..7fb2b81ed0d2 --- /dev/null +++ b/science/opensim-core/files/patch-buildWheel.cmake @@ -0,0 +1,10 @@ +--- buildWheel.cmake.orig 2026-06-18 22:26:24 UTC ++++ buildWheel.cmake +@@ -22,6 +22,6 @@ else() + # add $ORIGIN to rpath as layout has changed + file(GLOB SIMTK_LIBS "${CMAKE_INSTALL_PREFIX}/${OPENSIM_INSTALL_PYTHONDIR}/opensim/libSimTK*.so*") + foreach(slib ${SIMTK_LIBS}) +- execute_process(COMMAND bash "-c" "patchelf --force-rpath --set-rpath '$ORIGIN' '${slib}'") ++ #execute_process(COMMAND bash "-c" "patchelf --force-rpath --set-rpath '$ORIGIN' '${slib}'") + endforeach() + endif() diff --git a/science/opensim-core/files/patch-cmake_CMakeLists.txt b/science/opensim-core/files/patch-cmake_CMakeLists.txt new file mode 100644 index 000000000000..494eaaa5b6c3 --- /dev/null +++ b/science/opensim-core/files/patch-cmake_CMakeLists.txt @@ -0,0 +1,11 @@ +--- cmake/CMakeLists.txt.orig 2026-06-18 22:26:24 UTC ++++ cmake/CMakeLists.txt +@@ -59,7 +59,7 @@ if(UNIX AND OPENSIM_COPY_DEPENDENCIES AND OPENSIM_WITH + # is installed (add_subdirectory(cmake) must be after + # add_subdirectory(Moco)). + if (OPENSIM_WITH_CASADI) +- get_target_property(CASADI_LIBRARY_LOCATION casadi LOCATION) ++ get_target_property(CASADI_LIBRARY_LOCATION casadi::casadi LOCATION) + get_filename_component(CASADI_LIBDIR "${CASADI_LIBRARY_LOCATION}" DIRECTORY) + endif() + diff --git a/science/opensim-core/files/patch-cmake_OpenSimMacros.cmake b/science/opensim-core/files/patch-cmake_OpenSimMacros.cmake new file mode 100644 index 000000000000..6c9f6e944169 --- /dev/null +++ b/science/opensim-core/files/patch-cmake_OpenSimMacros.cmake @@ -0,0 +1,13 @@ +--- cmake/OpenSimMacros.cmake.orig 2026-06-18 22:26:24 UTC ++++ cmake/OpenSimMacros.cmake +@@ -619,8 +619,8 @@ function(OpenSimInstallVisualizer DEP_LIBS_DIR_WIN + set(simbody_visualizer "${DEP_LIBS_DIR_UNIX}/../libexec/simbody/simbody-visualizer") + install(FILES ${simbody_visualizer} DESTINATION "${OSIM_DESTINATION}") + # On Linux, the visualizer is a dynamically linked executable, we need fix rpath +- execute_process(COMMAND bash "-c" "patchelf --set-rpath '$ORIGIN/:$ORIGIN/../../lib' '${simbody_visualizer}'" OUTPUT_VARIABLE res) +- message(STATUS "patchelf --set-rpath '$ORIGIN/:.$ORIGIN/../../lib' '${simbody_visualizer}' '${res}'") ++ #execute_process(COMMAND bash "-c" "patchelf --set-rpath '$ORIGIN/:$ORIGIN/../../lib' '${simbody_visualizer}'" OUTPUT_VARIABLE res) ++ #message(STATUS "patchelf --set-rpath '$ORIGIN/:.$ORIGIN/../../lib' '${simbody_visualizer}' '${res}'") + endif() + endif() + endfunction() diff --git a/science/opensim-core/files/patch-cmake_OpenSimMocoInstallLinuxDependencyLibraries.cmake.in b/science/opensim-core/files/patch-cmake_OpenSimMocoInstallLinuxDependencyLibraries.cmake.in new file mode 100644 index 000000000000..0aef7ea2229a --- /dev/null +++ b/science/opensim-core/files/patch-cmake_OpenSimMocoInstallLinuxDependencyLibraries.cmake.in @@ -0,0 +1,33 @@ +--- cmake/OpenSimMocoInstallLinuxDependencyLibraries.cmake.in.orig 2026-06-18 22:26:24 UTC ++++ cmake/OpenSimMocoInstallLinuxDependencyLibraries.cmake.in +@@ -6,21 +6,21 @@ macro(install_name_tool_add_rpath lib) + set(libdir "@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@") + + macro(install_name_tool_add_rpath lib) +- execute_process(COMMAND bash "-c" "patchelf --force-rpath --set-rpath '$ORIGIN/:$ORIGIN/../../sdk/Simbody/lib' '${libdir}/lib${lib}'" +- OUTPUT_VARIABLE res) +- message(STATUS "patchelf --set-rpath '$ORIGIN/:../../sdk/Simbody/lib' '${libdir}/lib${lib}' '${res}'") ++ #execute_process(COMMAND bash "-c" "patchelf --force-rpath --set-rpath '$ORIGIN/:$ORIGIN/../../sdk/Simbody/lib' '${libdir}/lib${lib}'" ++ # OUTPUT_VARIABLE res) ++ #message(STATUS "patchelf --set-rpath '$ORIGIN/:../../sdk/Simbody/lib' '${libdir}/lib${lib}' '${res}'") + endmacro() + + macro(install_name_tool_delete_rpath lib) +- execute_process(COMMAND bash "-c" "patchelf --remove-rpath '${libdir}/lib${lib}'" +- OUTPUT_VARIABLE res) +- message(STATUS "patchelf --remove-rpath '${libdir}/lib${lib}' '${res}'") ++ #execute_process(COMMAND bash "-c" "patchelf --remove-rpath '${libdir}/lib${lib}'" ++ # OUTPUT_VARIABLE res) ++ #message(STATUS "patchelf --remove-rpath '${libdir}/lib${lib}' '${res}'") + endmacro() + + macro(install_name_tool_print_rpath lib) +- execute_process(COMMAND bash "-c" "patchelf --print-rpath '${libdir}/lib${lib}'" +- OUTPUT_VARIABLE created_rpath) +- message(STATUS "RPATH = '${created_rpath}'") ++ #execute_process(COMMAND bash "-c" "patchelf --print-rpath '${libdir}/lib${lib}'" ++ # OUTPUT_VARIABLE created_rpath) ++ #message(STATUS "RPATH = '${created_rpath}'") + endmacro() + + if (OPENSIM_WITH_CASADI) diff --git a/science/opensim-core/pkg-plist b/science/opensim-core/pkg-plist index 326cb4948a37..64ddc1e04880 100644 --- a/science/opensim-core/pkg-plist +++ b/science/opensim-core/pkg-plist @@ -1,1117 +1,1430 @@ bin/opensense bin/opensim-cmd bin/opensim-install-command-line.sh %%ETCDIR%%_buildinfo.txt +include/OpenSim/Actuators/ActivationCoordinateActuator.h include/OpenSim/Actuators/ActiveForceLengthCurve.h include/OpenSim/Actuators/BodyActuator.h include/OpenSim/Actuators/ClutchedPathSpring.h include/OpenSim/Actuators/ConstantMuscleActivation.h include/OpenSim/Actuators/CoordinateActuator.h +include/OpenSim/Actuators/DeGrooteFregly2016Muscle.h include/OpenSim/Actuators/Delp1990Muscle_Deprecated.h include/OpenSim/Actuators/FiberCompressiveForceCosPennationCurve.h include/OpenSim/Actuators/FiberCompressiveForceLengthCurve.h include/OpenSim/Actuators/FiberForceLengthCurve.h include/OpenSim/Actuators/FirstOrderMuscleActivationDynamics.h include/OpenSim/Actuators/ForceVelocityCurve.h include/OpenSim/Actuators/ForceVelocityInverseCurve.h include/OpenSim/Actuators/McKibbenActuator.h +include/OpenSim/Actuators/MeyerFregly2016Muscle.h include/OpenSim/Actuators/Millard2012AccelerationMuscle.h include/OpenSim/Actuators/Millard2012EquilibriumMuscle.h +include/OpenSim/Actuators/ModelFactory.h +include/OpenSim/Actuators/ModelOperators.h +include/OpenSim/Actuators/ModelProcessor.h include/OpenSim/Actuators/MuscleActivationDynamics.h include/OpenSim/Actuators/MuscleFirstOrderActivationDynamicModel.h include/OpenSim/Actuators/MuscleFixedWidthPennationModel.h include/OpenSim/Actuators/MuscleSecondOrderActivationDynamicModel.h include/OpenSim/Actuators/PointActuator.h include/OpenSim/Actuators/PointToPointActuator.h +include/OpenSim/Actuators/PolynomialPathFitter.h include/OpenSim/Actuators/RegisterTypes_osimActuators.h include/OpenSim/Actuators/RigidTendonMuscle.h include/OpenSim/Actuators/Schutte1993Muscle_Deprecated.h include/OpenSim/Actuators/SpringGeneralizedForce.h include/OpenSim/Actuators/TendonForceLengthCurve.h include/OpenSim/Actuators/Thelen2003Muscle.h include/OpenSim/Actuators/Thelen2003Muscle_Deprecated.h include/OpenSim/Actuators/TorqueActuator.h include/OpenSim/Actuators/ZerothOrderMuscleActivationDynamics.h include/OpenSim/Actuators/osimActuators.h include/OpenSim/Actuators/osimActuatorsDLL.h include/OpenSim/Analyses/Actuation.h include/OpenSim/Analyses/BodyKinematics.h include/OpenSim/Analyses/ForceReporter.h +include/OpenSim/Analyses/IMUDataReporter.h include/OpenSim/Analyses/InducedAccelerations.h include/OpenSim/Analyses/InducedAccelerationsSolver.h include/OpenSim/Analyses/InverseDynamics.h include/OpenSim/Analyses/JointReaction.h include/OpenSim/Analyses/Kinematics.h include/OpenSim/Analyses/MuscleAnalysis.h include/OpenSim/Analyses/OutputReporter.h include/OpenSim/Analyses/PointKinematics.h include/OpenSim/Analyses/ProbeReporter.h include/OpenSim/Analyses/RegisterTypes_osimAnalyses.h include/OpenSim/Analyses/StatesReporter.h include/OpenSim/Analyses/StaticOptimization.h include/OpenSim/Analyses/StaticOptimizationTarget.h include/OpenSim/Analyses/osimAnalyses.h include/OpenSim/Analyses/osimAnalysesDLL.h include/OpenSim/Common/APDMDataReader.h include/OpenSim/Common/APDMDataReaderSettings.h include/OpenSim/Common/About.h include/OpenSim/Common/AbstractDataTable.h include/OpenSim/Common/AbstractProperty.h include/OpenSim/Common/Adapters.h include/OpenSim/Common/Array.h include/OpenSim/Common/ArrayPtrs.h +include/OpenSim/Common/Assertion.h include/OpenSim/Common/CSVFileAdapter.h include/OpenSim/Common/CommonUtilities.h include/OpenSim/Common/Component.h include/OpenSim/Common/ComponentList.h include/OpenSim/Common/ComponentOutput.h include/OpenSim/Common/ComponentPath.h include/OpenSim/Common/ComponentSocket.h include/OpenSim/Common/Constant.h include/OpenSim/Common/DataAdapter.h +include/OpenSim/Common/DataQueue.h include/OpenSim/Common/DataTable.h include/OpenSim/Common/DebugUtilities.h include/OpenSim/Common/DelimFileAdapter.h include/OpenSim/Common/Event.h include/OpenSim/Common/Exception.h 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%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/APDMDataReaderSettings.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractChannel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractDataTable.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractGeometryPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractInput.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractOutput.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractPathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractProperty.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractSocket.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AbstractTool.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActivationCoordinateActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActivationFiberLengthMuscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActiveForceLengthCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Actuation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Actuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActuatorForceProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActuatorIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActuatorList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ActuatorPowerProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AdhocModelComponent.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Analysis.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AnalysisSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AnalysisWrapper.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AnalyticGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AnalyzeTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Appearance.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayBool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayConstObjPtr.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayDecorativeGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayIndexInt.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayIndexUnsigned.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayInt.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayObjPtr.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayPathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayPointForceDirection.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayPtrsConstObj.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayPtrsObj.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayPtrsPropertyGroup.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayStateVector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayStorage.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayStr.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ArrayXYPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Arrow.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/AssemblySolver.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BallJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Bhargava2004MuscleMetabolicsProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Bhargava2004MuscleMetabolicsProbe_MetabolicMuscleParameter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Bhargava2004MuscleMetabolicsProbe_MetabolicMuscleParameterSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Bhargava2004SmoothedMuscleMetabolics.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Bhargava2004SmoothedMuscleMetabolics_MuscleParameters.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Blankevoort1991Ligament.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Body.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyKinematics.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyOrSpaceType.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyScale.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodyScaleSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BodySet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BoolLike.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Brick.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BufferedOrientationsReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/BushingForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CMCTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CMC_Joint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CMC_Point.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CMC_Task.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CMC_TaskSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CSVFileAdapter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ClutchedPathSpring.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ColumnIndexOutOfRange.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Component.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentAlreadyPartOfOwnershipTree.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentFilter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentFilterAbsolutePathNameContainsString.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentFilterMatchAll.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentHasNoName.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentHasNoSystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentIsAnOrphan.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentIsRootWithNoSubcomponents.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentNotFoundOnSpecifiedPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ComponentsList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConditionalPathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Cone.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConnecteeNotSpecified.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConsoleReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConsoleReporterVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Constant.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConstantCurvatureJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConstantDistanceConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Constraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ConstraintSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactCylinder.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactEllipsoid.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactGeometrySet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactHalfSpace.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactMesh.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactSphere.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ContactTorus.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Control.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ControlConstant.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ControlLinear.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ControlLinearNode.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ControlSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Controller.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ControllerSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Coordinate.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateAxis.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateCouplerConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateDirection.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateLimitForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CoordinateSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/CustomJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Cylinder.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataAdapter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataAdapterAlreadyRegistered.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableUnitVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTableVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DataTypeMismatch.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DeGrooteFregly2016Muscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Decorations.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeArrow.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeBrick.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeCircle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeCone.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeCylinder.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeEllipsoid.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeGeometryImplementation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeLine.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeMesh.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeMeshFile.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativePoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeSphere.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeText.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DecorativeTorus.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DontCopy.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/DynamicsTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ElasticFoundationForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Ellipsoid.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/EllipsoidJoint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/EmptyComponentPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/EmptyFileName.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/EmptyTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Event.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExperimentalSensor.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExponentialContactForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExpressionBasedBushingForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExpressionBasedCoordinateForce.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExpressionBasedFunction.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExpressionBasedPathForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExpressionBasedPointToPointForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExternalForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ExternalLoads.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FalseType.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FiberCompressiveForceCosPennationCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FiberCompressiveForceLengthCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FiberForceLengthCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileAdapter.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileDeletionThrower.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileDeletionThrowerException.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileDoesNotExist.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileExtensionNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileIsEmpty.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FileRemover.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Force.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForceProducer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForceReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForceSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForceVelocityCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForceVelocityInverseCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ForwardTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Frame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FrameGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FrameIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FrameList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FreeJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Function.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FunctionBasedBushingForce.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FunctionBasedPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/FunctionSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/GCVSpline.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/GCVSplineSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/GenericModelMaker.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Geometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/GeometryPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/GimbalJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Ground.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/HopperDevice.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/HuntCrossleyForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IKCoordinateTask.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IKMarkerTask.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IKTask.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IKTaskSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IMU.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IMUDataReader.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IMUDataReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IMUInverseKinematicsTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IMUPlacer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IO.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IOError.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectMetaDataLength.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectNumColumnLabels.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectNumColumns.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectNumMetaDataKeys.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectNumRows.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectNumTokens.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IncorrectTableType.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IndexOutOfRange.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InducedAccelerations.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Inertia.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InputController.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InputDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InputNotConnected.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InputNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InputVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InterruptCallback.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidArgument.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidCall.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidColumn.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidColumnLabel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidComponentName.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidIndices.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidPropertyValue.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidRow.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidTemplateArgument.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidTimeRange.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InvalidTimestamp.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseDynamics.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseDynamicsSolver.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseDynamicsTool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseKinematicsSolver.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseKinematicsTool.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseKinematicsToolBase.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/InverseRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/IteratorRangeStatesTrajectoryIterator.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JavaLogSink.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Joint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointFramesAreTheSame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointFramesHaveSameBaseFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointHasNoCoordinates.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointInternalPowerProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointReaction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/JointSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/KeyExists.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/KeyMissing.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/KeyNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Kinematics.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Ligament.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/LineGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/LinearFunction.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/LogSink.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Logger.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Manager.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Marker.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerData.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerPair.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerPairSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerPlacer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkerWeight.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MarkersReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MassProperties.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Mat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Matrix.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixBaseVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixOfSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixView.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixViewMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixViewVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MatrixViewVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/McKibbenActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Measurement.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MeasurementSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Mesh.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MetaDataLengthMismatch.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MeyerFregly2016Force.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MeyerFregly2016Muscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Millard2012AccelerationMuscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Millard2012EquilibriumMuscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Millard2012EquilibriumMuscleIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Millard2012EquilibriumMuscleList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MissingHeader.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MissingMetaData.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoAccelerationTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoAngularVelocityTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoAverageSpeedGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoBounds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoCasADiSolver.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoCasADiSolverNotAvailable.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoConstraintInfo.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoContactImpulseTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoContactImpulseTrackingGoalGroup.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoContactTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoContactTrackingGoalGroup.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoControlBoundConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoControlGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoControlTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoControlTrackingGoalReference.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoDirectCollocationSolver.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoExpressionBasedParameterGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoFinalBounds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoFinalOutputGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoFinalTimeGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoFrameDistanceConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoFrameDistanceConstraintPair.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoGeneralizedForceTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInitialActivationGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInitialBounds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInitialForceEquilibriumDGFGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInitialOutputGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInitialVelocityEquilibriumDGFGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInverse.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoInverseSolution.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoJointReactionGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoKinematicConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoMarkerFinalGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoMarkerTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOrientationTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputBase.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputBoundConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputExtremumGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputPeriodicityGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoOutputTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoParameter.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoPathConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoPeriodicityGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoPeriodicityGoalPair.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoPhase.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoProblem.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoProblemRep.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoScaleFactor.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoSolution.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoSolver.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStateBoundConstraint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStateTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStepLengthAsymmetryGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStepTimeAsymmetryGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStepTimeAsymmetryGoalGroup.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStudy.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoStudyFactory.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoSumSquaredStateGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoTool.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoTrack.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoTrajectory.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoTrajectoryIsSealed.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoTranslationTrackingGoal.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoVariableInfo.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoWeight.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MocoWeightSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpAddExternalLoads.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpAddReserves.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpAddResiduals.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpFiberDampingDGF.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpIgnoreActivationDynamics.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpIgnorePassiveFiberForcesDGF.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpIgnoreTendonCompliance.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpPassiveFiberStrainAtOneNormForceDGF.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpPrescribeCoordinateValues.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpRemoveMuscles.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpReplaceJointsWithWelds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpReplaceMusclesWithDeGrooteFregly2016.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpReplaceMusclesWithPathActuators.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpReplacePathsWithFunctionBasedPaths.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpScaleActiveFiberForceCurveWidthDGF.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpScaleMaxIsometricForce.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpTendonComplianceDynamicsModeDGF.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModOpUseImplicitTendonComplianceDynamicsDGF.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Model.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponent.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetBodies.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetConstraints.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetContactGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetControllers.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetExternalForces.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetForces.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetFrames.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetJoints.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetMarkers.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetModelComponent.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetProbes.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelComponentSetWrapObjects.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelDisplayHints.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelFactory.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelHasNoSystem.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelOperator.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelProcessor.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelScaler.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelVisualPreferences.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelVisualizer.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ModelingOptionMaxExceeded.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MomentArmSolver.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MovingPathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MultiplierFunction.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MultivariatePolynomialFunction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Muscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleActiveFiberPowerProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleAnalysis.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleCannotEquilibrate.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleFirstOrderActivationDynamicModel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleFixedWidthPennationModel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/MuscleList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/NoColumnLabels.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/NoRegisteredDataAdapter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/NoTableFound.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/NonUniqueLabels.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ObjectGroup.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSenseUtilities.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSimContext.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSimException.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSimJavaObject.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSimObject.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OpenSimObjectSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OrientationWeight.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OrientationWeightSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OrientationsReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputTransform.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/OutputVector.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Path.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathPointSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathSpring.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathWrap.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathWrapPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PathWrapSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PhysicalFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PhysicalFrameWithOffset.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PhysicalOffsetFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PhysicalOffsetFramesFormLoop.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PiecewiseConstantFunction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PiecewiseLinearFunction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PinJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PlanarJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Point.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointForceDirection.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointKinematics.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointOnLineConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointToPointActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PointToPointSpring.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PolygonalMesh.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PolynomialFunction.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PolynomialPathFitter.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PolynomialPathFitterBounds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PositionMotion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PrescribedController.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PrescribedForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Probe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ProbeReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ProbeSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyBoolList.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyDoubleList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyGroup.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyHelper.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyString.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyIntList.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyObjectList.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/PropertyStringList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Quaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RRATool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReferenceDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReferenceRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReferenceVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReporterDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReporterVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ReporterVector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RigidTendonMuscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Rotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowIndexOutOfRange.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowLengthMismatch.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorBaseVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorView.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorViewMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorViewQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorViewRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorViewVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/RowVectorViewVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STODataTypeNotSupported.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapterQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapterSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapterUnitVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapterVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/STOFileAdapterVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_Array_T_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_ComponentPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_DecorativeGeometryRep.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_E.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_MocoBounds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_MocoConstraintInfo.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__AccelerationMotion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Actuator_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Body_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Component_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Frame_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Joint_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Millard2012EquilibriumMuscle_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__ModelComponent_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Muscle_const_t__type_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ComponentListIteratorT_std__add_constT_OpenSim__Thelen2003Muscle_const_t__type_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ControlDistributor.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__DiscreteForces.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ElasticFoundationForce__ContactParameters.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ElasticFoundationForce__ContactParametersSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__ForceConsumer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__HuntCrossleyForce__ContactParameters.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__HuntCrossleyForce__ContactParametersSet.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__MocoProblemInfo.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__Object.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__OutputT_SimTK__VecT_3_double_1_t_t__Channel.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__OutputT_SimTK__VecT_3_t_t__Channel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__OutputT_double_t__Channel.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__SetT_OpenSim__Actuator_const_OpenSim__Object_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__SetT_OpenSim__OrientationWeight_OpenSim__Object_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__TimeSeriesTable_T_SimTK__Quaternion_T_SimTK__Real_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__PropertyIndex.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__TimeSeriesTable_T_SimTK__Rotation_T_SimTK__Real_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OpenSim__WrapResult.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_OrientationWeight.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_PathWrapPoint.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_PropertyIndex.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_PropertySet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_Property_Deprecated.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__AbstractValue.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_SimTK__ForceIndex_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_SimTK__Rotation_T_SimTK__Real_t_unsigned_int_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_SimTK__State_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_SimTK__Visualizer__FrameController_p_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_SimTK__Visualizer__InputListener_p_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_String_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Array_T_std__pairT_String_int_t_unsigned_int_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Assembler.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__CableSubsystem.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__CacheEntryIndex.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__ConstraintIndex.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__ContactGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__DecorationGenerator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__DefaultGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__DefaultSystemSubsystem.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__ForceIndex.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Force__Gravity.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Function.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__GeneralForceSubsystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Integrator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__InverseTransform_T_double_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatT_3_4_double_3_1_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatT_4_4_double_4_1_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatT_6_3_double_6_1_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatrixView_T_SimTK__Quaternion_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatrixView_T_SimTK__Rotation_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatrixView_T_SimTK__UnitVecT_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatrixView_T_SimTK__VecT_2_SimTK__Vec3_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MatrixView_T_SimTK__VecT_2_SimTK__Vec3_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Matrix_T_SimTK__UnitVecT_double_1_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MobilizedBody.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__MultibodySystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Quaternion_T_SimTK__Real_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Random.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Rotation_T_SimTK__Real_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVectorView_T_SimTK__UnitVecT_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVectorView_T_SimTK__VecT_2_SimTK__Vec3_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVectorView_T_SimTK__VecT_2_SimTK__Vec3_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVector_T_SimTK__UnitVecT_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVector_T_SimTK__VecT_2_SimTK__Vec3_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__RowVector_T_SimTK__VecT_2_SimTK__Vec3_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__String.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Subsystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__VectorView_T_SimTK__Quaternion_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__VectorView_T_SimTK__Rotation_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__VectorView_T_SimTK__UnitVecT_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__VectorView_T_SimTK__VecT_2_SimTK__Vec3_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__VectorView_T_SimTK__VecT_2_SimTK__Vec3_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Vector_T_SimTK__UnitVecT_double_1_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimTK__Xml__Element.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SimbodyMatterSubsystemRep.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SmoothSegmentedFunction.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_Station.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_String.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_Subsystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_SystemEventTriggerIndex.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_TimeSeriesTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_Transform.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__MatT_3_3_double_3_1_t_SimTK__RowVectorBaseT_SimTK__MatT_3_3_double_3_1_t_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__MatT_3_3_double_t_SimTK__RowVectorBaseT_SimTK__Mat33_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__Quaternion_T_double_t_SimTK__RowVectorBaseT_SimTK__Quaternion_T_double_t_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__Rotation_T_double_t_SimTK__RowVectorBaseT_SimTK__Rotation_T_double_t_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__VecT_3_double_1_t_SimTK__RowVectorBaseT_SimTK__VecT_3_double_1_t_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__VecT_6_double_1_t_SimTK__RowVectorBaseT_SimTK__VecT_6_double_1_t_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__VecT_3_t_SimTK__RowVectorBaseT_SimTK__Vec3_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_SimTK__VecT_6_t_SimTK__RowVectorBaseT_SimTK__Vec6_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_VectorIteratorT_double_SimTK__RowVectorBaseT_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_a_3__double.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_bool.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_capacity.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_data.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_double.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_int.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_long_double.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_p_OpenSim__Storage.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_p_double.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_ptrdiff_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_size.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__add_constT_OpenSim__ControlLinearNode_t__type.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__add_constT_OpenSim__Object_const_t__type.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__add_constT_OpenSim__Object_t__type.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__add_constT_OpenSim__PropertyGroup_t__type.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__add_constT_OpenSim__Storage_t__type.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_double_fdouble_const_RF_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__Transform_T_double_t_RF_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__VecT_2_SimTK__VecT_3_double_1_t_1_t_RF_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__VecT_3_double_1_t_RF_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__VecT_2_SimTK__Vec3_t_RF_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__VecT_3_t_RF_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_SimTK__Vector_T_double_t_RF_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__functionT_void_fOpenSim__Component_const_p_SimTK__State_const_R_std__string_const_R_double_RF_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__MatT_3_3_double_3_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__AbstractPathPoint_p_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__Object_const_p_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__Object_p_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__PointForceDirection_p_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__StateVector_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_OpenSim__XYPoint_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__MatT_3_3_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__Quaternion_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__Rotation_T_double_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__UnitVecT_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_2_SimTK__Vec3_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_3_double_1_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_6_double_1_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_2_SimTK__Vec3_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_3_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_SimTK__VecT_6_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_bool_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_double_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_int_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__initializer_listT_std__string_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__istream.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__AbstractDataTable_const_p_std__lessT_std__string_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__Transform_T_double_t_t__Channel_std__lessT_std__string_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__VecT_2_SimTK__Vec3_1_t_t__Channel_std__lessT_std__string_t_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__VecT_3_double_1_t_t__Channel_std__lessT_std__string_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__VecT_2_SimTK__Vec3_t_t__Channel_std__lessT_std__string_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__VecT_3_t_t__Channel_std__lessT_std__string_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_SimTK__Vector_T_double_t_t__Channel_std__lessT_std__string_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_OpenSim__OutputT_double_t__Channel_std__lessT_std__string_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__mapT_std__string_std__vectorT_std__string_t_std__lessT_std__string_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__ostream.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__pairT_std__vectorT_SimTK__State_t__const_iterator_std__vectorT_SimTK__State_t__const_iterator_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_OpenSim__CoordinateReference_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_SimTK__DecorativeGeometry_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_SimTK__Rotation_T_double_t_const_p_t.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_SimTK__VecT_3_double_1_t_const_p_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_SimTK__VecT_3_t_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_double_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_int_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__reverse_iteratorT_std__string_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__string.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__unordered_mapT_int_int_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__unordered_mapT_std__string_int_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_KinematicLevel_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_OpenSim__Function_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_OpenSim__MocoScaleFactor_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__Function_const_p_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__ReferencePtrT_OpenSim__Coordinate_const_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__ReferencePtrT_OpenSim__OutputT_SimTK__VecT_3_t_t__Channel_const_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__ReferencePtrT_OpenSim__OutputT_double_t__Channel_const_t_t.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__ReferencePtrT_OpenSim__OutputT_double_t_const_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_SimTK__State_t__const_iterator.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_std__vectorT_std__pairT_std__string_SimTK__ReferencePtrT_OpenSim__Component_const_t_t_t.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_unsigned_int.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_value.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SWIGTYPE_p_void.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ScalarActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Scale.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ScaleSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ScaleTool.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ScapulothoracicJoint.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Scholz2015GeometryPath.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Scholz2015GeometryPathElement.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Scholz2015GeometryPathObstacle.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Scholz2015GeometryPathPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Segment.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetActuators.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetAnalysis.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetBodies.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetBodyScales.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetConstraints.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetContactGeometry.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetControlNodes.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetControllers.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetControls.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetCoordinates.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetExternalForces.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetForces.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetFrames.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetFunctionBasedPaths.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetFunctions.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetIKTasks.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetJoints.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMarkerPairs.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMarkerWeights.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMarkers.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMeasurements.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMocoWeight.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetModelComponents.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetMuscles.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetOfPathPoints.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetOientationWeights.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetPathWrap.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetProbes.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetScales.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetTrackingTasks.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SetWrapObject.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SharedMarkersReference.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SharedOrientationsReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayCoordinateReference.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayInt.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayMobilizedBodyIndex.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayString.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKArrayVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKVisualizer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKVisualizerInputListener.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimTKVisualizerInputSilo.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimbodyEngine.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimbodyMatterSubsystem.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimmSpline.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SimtkLogCallback.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Sine.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SliderJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SmoothSegmentedFunction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SmoothSegmentedFunctionFactory.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SmoothSphereHalfSpaceForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SocketNotFound.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Solver.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SpatialTransform.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Sphere.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SpringGeneralizedForce.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Stage.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/State.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StateVector.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StatesDocument.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StatesReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StatesTrajectory.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StatesTrajectoryReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StaticOptimization.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Station.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StationDefinedFrame.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdMapStringAbstractDataTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdMapStringDataAdapter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorEvent.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorIMUs.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorInt.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorMatrix.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorMocoBounds.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorState.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorString.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorUnsigned.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StdVectorVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StepFunction.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Storage.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StorageInterface.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StreamableReferenceRotation.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/StringLogSink.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SubcomponentsWithDuplicateName.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SurfaceProperties.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SynergyController.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SynergyVector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/SystemEnergyProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TRCFileAdapter.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TabOpAppendCoordinateValueDerivativesAsSpeeds.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TabOpAppendCoupledCoordinateValues.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TabOpConvertDegreesToRadians.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TabOpLowPassFilter.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TabOpUseAbsoluteStateNames.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableMissingHeader.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableNotFoundException.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableOperator.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableProcessor.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableReporter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableReporterSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableReporterVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableReporterVector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableSource.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableSourceVec3.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TableUtilities.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TendonForceLengthCurve.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Thelen2003Muscle.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Thelen2003MuscleIterator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Thelen2003MuscleList.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeColumnNotIncreasing.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeOutOfRange.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTable.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableUnitVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimeSeriesTableVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimestampGreaterThanEqualToNext.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TimestampLessThanEqualToPrevious.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Tool.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TorqueActuator.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Torus.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ToyPropMyoController.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/ToyReflexController.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TrackingTask.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Transform.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TransformAxis.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TrueType.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TrustMe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TwoFrameLinkerConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TwoFrameLinkerForce.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/TwoFrameLinkerForceProducer.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Umberger2010MuscleMetabolicsProbe.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/UnexpectedColumnLabel.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/UnexpectedMetaDataKey.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/UnitVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Units.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/UniversalJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/UnsupportedFileType.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VariableNotFound.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VariableOwnerNotFoundOnSpecifiedPath.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Vec2.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Vec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Vec4.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Vec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/Vector.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseDouble.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorBaseVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorOfSpatialVec.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorQuaternion.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorRotation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorVec6.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorView.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorViewMat33.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorViewVec3.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VectorViewVec6.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/VisualizerUtilities.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WeldConstraint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WeldJoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapCylinder.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapCylinderObst.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapDoubleCylinderObst.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapEllipsoid.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapObject.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapObjectSet.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapSphere.java -%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapSphereObst.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/WrapTorus.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/XYFunctionInterface.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/XYPoint.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/XsensDataReader.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/XsensDataReaderSettings.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimActuatorsAnalysesTools.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimActuatorsAnalysesToolsJNI.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimCommon.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimCommonJNI.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimExampleComponents.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimExampleComponentsJNI.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimMoco.java +%%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimMocoJNI.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimSimbody.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimSimbodyConstants.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimSimbodyJNI.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimSimulation.java %%JAVA%%%%DATADIR%%/java/org/opensim/modeling/opensimSimulationJNI.java %%JAVA%%%%JAVASHAREDIR%%/org-opensim-modeling.jar