diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 40f24bc66bed..2fc85bad7d51 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,48 +1,45 @@ PORTNAME= ncbi-cxx-toolkit -DISTVERSION= 25_2_0 +DISTVERSIONPREFIX= release- +DISTVERSION= 26.0.1 CATEGORIES= biology science devel -MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Sep_30_2021/ -DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE LIB_DEPENDS= libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash -USES= compiler:c++14-lang gmake mysql perl5 python shebangfix ssl xorg +USES= compiler:c++17-lang gmake mysql perl5 python shebangfix ssl xorg USE_XORG= x11 xpm +USE_GITHUB= yes +GH_ACCOUNT= ncbi +GH_PROJECT= ${PORTNAME}-public + SHEBANG_FILES= src/app/blast/get_species_taxids.sh SHEBANG_GLOB= *.pl *.py GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-debug --with-dll --without-static \ --without-vdb CONFLICTS_INSTALL= ncbi-blast+ post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} - # remove an empty directory - #@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg - @${RMDIR} \ - ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \ - ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms - # remove the conflicting file + # remove the conflicting files @${RM} \ ${STAGEDIR}${PREFIX}/lib/libcdd.so \ ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ - ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ ${FIND} * -type f -or -type l >> ${TMPPLIST} .include diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 68a69535957e..af7c94b0fa38 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1633054572 -SHA256 (ncbi_cxx--25_2_0.tar.gz) = 9f824a92750e64e7b9be98d82b84414ab4f7e5d73392dadbb87c94ff5ccf9111 -SIZE (ncbi_cxx--25_2_0.tar.gz) = 95671156 +TIMESTAMP = 1643225773 +SHA256 (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = aba79da5c8d0407ffc92b7831f4f8f8a8096a15e47a016ada81b6568f9d280cc +SIZE (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = 103933829