diff --git a/biology/vcftools/Makefile b/biology/vcftools/Makefile
index 6ff8f6c4fa62..e7d8ab338312 100644
--- a/biology/vcftools/Makefile
+++ b/biology/vcftools/Makefile
@@ -1,22 +1,23 @@
 PORTNAME=	vcftools
 PORTVERSION=	0.1.16
 DISTVERSIONPREFIX=	v
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Tools for working with VCF genomics files
 WWW=		https://github.com/vcftools/vcftools
 
 LICENSE=	LGPL3
 
 USES=		autoreconf cpe gmake perl5 pkgconfig
 
 GNU_CONFIGURE=	yes
+GNU_CONFIGURE_MANPREFIX=	${PREFIX}/share
 USE_GITHUB=	yes
 
 CXXFLAGS+=	-std=c++14
 
 CPE_VENDOR=	vcftools_project
 
 .include <bsd.port.mk>
diff --git a/biology/vcftools/pkg-plist b/biology/vcftools/pkg-plist
index 0ad450ca4f19..c90691ad6c14 100644
--- a/biology/vcftools/pkg-plist
+++ b/biology/vcftools/pkg-plist
@@ -1,29 +1,29 @@
 bin/fill-aa
 bin/fill-an-ac
 bin/fill-fs
 bin/fill-ref-md5
 bin/vcf-annotate
 bin/vcf-compare
 bin/vcf-concat
 bin/vcf-consensus
 bin/vcf-contrast
 bin/vcf-convert
 bin/vcf-fix-newlines
 bin/vcf-fix-ploidy
 bin/vcf-indel-stats
 bin/vcf-isec
 bin/vcf-merge
 bin/vcf-phased-join
 bin/vcf-query
 bin/vcf-shuffle-cols
 bin/vcf-sort
 bin/vcf-stats
 bin/vcf-subset
 bin/vcf-to-tab
 bin/vcf-tstv
 bin/vcf-validator
 bin/vcftools
 %%SITE_PERL%%/FaSlice.pm
 %%SITE_PERL%%/Vcf.pm
 %%SITE_PERL%%/VcfStats.pm
-man/man1/vcftools.1.gz
+share/man/man1/vcftools.1.gz