diff --git a/biology/libsedml/Makefile b/biology/libsedml/Makefile index 9709fa517d13..556abc678603 100644 --- a/biology/libsedml/Makefile +++ b/biology/libsedml/Makefile @@ -1,30 +1,30 @@ PORTNAME= libsedml DISTVERSIONPREFIX= v -DISTVERSION= 2.0.27 +DISTVERSION= 2.0.28 CATEGORIES= biology devel MAINTAINER= yuri@FreeBSD.org COMMENT= C++ SED-ML library LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= libsbml>0:biology/libsbml \ libnuml>0:biology/libnuml # statically linked, even into a shared library, see https://github.com/fbergmann/libSEDML/issues/155 RUN_DEPENDS= libsbml>0:biology/libsbml \ libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency -USES= cmake gnome +USES= cmake compiler:c++11-lang gnome USE_GNOME= libxml2 USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= fbergmann GH_PROJECT= libSEDML post-install: @${RM} -r ${STAGEDIR}${DATADIR} # the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155 .include diff --git a/biology/libsedml/distinfo b/biology/libsedml/distinfo index ebba10b5a108..1bb5e5194176 100644 --- a/biology/libsedml/distinfo +++ b/biology/libsedml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1645031414 -SHA256 (fbergmann-libSEDML-v2.0.27_GH0.tar.gz) = c18a1f893104e12b20e95f6a15630e9cd29ef34af915950229b771da5bd8dd01 -SIZE (fbergmann-libSEDML-v2.0.27_GH0.tar.gz) = 959802 +TIMESTAMP = 1646523671 +SHA256 (fbergmann-libSEDML-v2.0.28_GH0.tar.gz) = 62686f25b2dd64115b526e97eed7cf3429d18e4713ac23e9986de9d79c2bf2e6 +SIZE (fbergmann-libSEDML-v2.0.28_GH0.tar.gz) = 959886 diff --git a/biology/libsedml/pkg-plist b/biology/libsedml/pkg-plist index 24581d796c46..7c5dfb5a451d 100644 --- a/biology/libsedml/pkg-plist +++ b/biology/libsedml/pkg-plist @@ -1,111 +1,111 @@ include/sedml/SedAbstractCurve.h include/sedml/SedAbstractTask.h include/sedml/SedAddXML.h include/sedml/SedAdjustableParameter.h include/sedml/SedAlgorithm.h include/sedml/SedAlgorithmParameter.h include/sedml/SedAnalysis.h include/sedml/SedAppliedDimension.h include/sedml/SedAxis.h include/sedml/SedBase.h include/sedml/SedBounds.h include/sedml/SedChange.h include/sedml/SedChangeAttribute.h include/sedml/SedChangeXML.h include/sedml/SedComputeChange.h include/sedml/SedConstructorException.h include/sedml/SedCurve.h include/sedml/SedDataDescription.h include/sedml/SedDataGenerator.h include/sedml/SedDataRange.h include/sedml/SedDataSet.h include/sedml/SedDataSource.h include/sedml/SedDocument.h include/sedml/SedElementFilter.h include/sedml/SedError.h include/sedml/SedErrorLog.h include/sedml/SedErrorTable.h include/sedml/SedExperimentReference.h include/sedml/SedFigure.h include/sedml/SedFill.h include/sedml/SedFitExperiment.h include/sedml/SedFitMapping.h include/sedml/SedFunctionalRange.h include/sedml/SedLeastSquareObjectiveFunction.h include/sedml/SedLine.h include/sedml/SedListOf.h include/sedml/SedListOfAdjustableParameters.h include/sedml/SedListOfAlgorithmParameters.h include/sedml/SedListOfAppliedDimensions.h include/sedml/SedListOfChanges.h include/sedml/SedListOfCurves.h include/sedml/SedListOfDataDescriptions.h include/sedml/SedListOfDataGenerators.h include/sedml/SedListOfDataSets.h include/sedml/SedListOfDataSources.h include/sedml/SedListOfExperimentReferences.h include/sedml/SedListOfFitExperiments.h include/sedml/SedListOfFitMappings.h include/sedml/SedListOfModels.h include/sedml/SedListOfOutputs.h include/sedml/SedListOfParameters.h include/sedml/SedListOfRanges.h include/sedml/SedListOfSetValues.h include/sedml/SedListOfSimulations.h include/sedml/SedListOfSlices.h include/sedml/SedListOfStyles.h include/sedml/SedListOfSubPlots.h include/sedml/SedListOfSubTasks.h include/sedml/SedListOfSurfaces.h include/sedml/SedListOfTasks.h include/sedml/SedListOfVariables.h include/sedml/SedMarker.h include/sedml/SedModel.h include/sedml/SedNamespaces.h include/sedml/SedObjective.h include/sedml/SedOneStep.h include/sedml/SedOutput.h include/sedml/SedParameter.h include/sedml/SedParameterEstimationReport.h include/sedml/SedParameterEstimationResultPlot.h include/sedml/SedParameterEstimationTask.h include/sedml/SedPlot.h include/sedml/SedPlot2D.h include/sedml/SedPlot3D.h include/sedml/SedRange.h include/sedml/SedReader.h include/sedml/SedRemoveXML.h include/sedml/SedRepeatedTask.h include/sedml/SedReport.h include/sedml/SedSetValue.h include/sedml/SedShadedArea.h include/sedml/SedSimulation.h include/sedml/SedSlice.h include/sedml/SedSteadyState.h include/sedml/SedStyle.h include/sedml/SedSubPlot.h include/sedml/SedSubTask.h include/sedml/SedSurface.h include/sedml/SedTask.h include/sedml/SedTypeCodes.h include/sedml/SedTypes.h include/sedml/SedUniformRange.h include/sedml/SedUniformTimeCourse.h include/sedml/SedVariable.h include/sedml/SedVectorRange.h include/sedml/SedVisitor.h include/sedml/SedWaterfallPlot.h include/sedml/SedWriter.h include/sedml/common/SedOperationReturnValues.h include/sedml/common/SedmlEnumerations.h include/sedml/common/common.h include/sedml/common/extern.h include/sedml/common/libsedml-config-common.h include/sedml/common/libsedml-config.h include/sedml/common/libsedml-namespace.h include/sedml/common/libsedml-version.h include/sedml/common/sedmlfwd.h lib/libsedml-static.a lib/libsedml.so lib/libsedml.so.2 -lib/libsedml.so.2.0.27 +lib/libsedml.so.2.0.28 diff --git a/biology/py-libsedml/Makefile b/biology/py-libsedml/Makefile index 67b310fe2cfa..e429621a500b 100644 --- a/biology/py-libsedml/Makefile +++ b/biology/py-libsedml/Makefile @@ -1,34 +1,34 @@ PORTNAME= libsedml DISTVERSIONPREFIX= v -DISTVERSION= 2.0.27 +DISTVERSION= 2.0.28 CATEGORIES= biology devel PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= SED-ML library for Python LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/../../../LICENSE.txt BUILD_DEPENDS= swig:devel/swig LIB_DEPENDS= libsedml.so:biology/libsedml \ libsbml.so:biology/libsbml \ libnuml.so:biology/libnuml USES= cmake localbase:ldflags python USE_PYTHON= flavors USE_GITHUB= yes GH_ACCOUNT= fbergmann GH_PROJECT= libSEDML CMAKE_ARGS= -DCMAKE_INSTALL_LIBDIR=lib LDFLAGS+= -lsedml -lsbml -lnuml # otherwise it builds a broken shared object, see https://github.com/NuML/NuML/issues/21 WRKSRC_SUBDIR= src/bindings/python do-test: install @${PYTHON_CMD} ${FILESDIR}/quick-test.py .include diff --git a/biology/py-libsedml/distinfo b/biology/py-libsedml/distinfo index 9bab66378064..e18936e2b91e 100644 --- a/biology/py-libsedml/distinfo +++ b/biology/py-libsedml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1645031777 -SHA256 (fbergmann-libSEDML-v2.0.27_GH0.tar.gz) = c18a1f893104e12b20e95f6a15630e9cd29ef34af915950229b771da5bd8dd01 -SIZE (fbergmann-libSEDML-v2.0.27_GH0.tar.gz) = 959802 +TIMESTAMP = 1646523883 +SHA256 (fbergmann-libSEDML-v2.0.28_GH0.tar.gz) = 62686f25b2dd64115b526e97eed7cf3429d18e4713ac23e9986de9d79c2bf2e6 +SIZE (fbergmann-libSEDML-v2.0.28_GH0.tar.gz) = 959886