diff --git a/biology/bio-mocha/Makefile b/biology/bio-mocha/Makefile index f7191a9f286b..97a2753ddad9 100644 --- a/biology/bio-mocha/Makefile +++ b/biology/bio-mocha/Makefile @@ -1,49 +1,50 @@ PORTNAME= bio-mocha DISTVERSION= 1.14 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= https://software.broadinstitute.org/software/mocha/ DISTFILES+= ${PORTNAME}_${DISTVERSION}-20220112.tar.gz MAINTAINER= jwb@FreeBSD.org COMMENT= Bcftools plugin for mosaic chromosomal alteration analysis LICENSE= MIT LIB_DEPENDS= libhts.so:biology/htslib BUILD_DEPENDS= bash:shells/bash RUN_DEPENDS= bcftools>=${PORTVERSION}:biology/bcftools USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GH_ACCOUNT= samtools GH_PROJECT= bcftools -GH_TAGNAME= 1.14 +GH_TAGNAME= 1.15 GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl post-extract: @${MV} ${WRKDIR}/*.c ${WRKDIR}/*.h ${WRKSRC}/plugins @${MKDIR} ${WRKSRC}/MoCha @${MV} ${WRKDIR}/*.R ${WRKSRC}/MoCha pre-configure: @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \ ${WRKSRC}/configure.ac do-install: ${MKDIR} ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/extendFMT.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/mocha.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/mochatools.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/score.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools ${INSTALL_PROGRAM} ${WRKSRC}/plugins/trio-phase.so \ ${STAGEDIR}${PREFIX}/libexec/bcftools (cd ${WRKSRC}/MoCha && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}) .include diff --git a/biology/bio-mocha/distinfo b/biology/bio-mocha/distinfo index 392157da945c..6f18a06e9fb5 100644 --- a/biology/bio-mocha/distinfo +++ b/biology/bio-mocha/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1642078792 +TIMESTAMP = 1645832006 SHA256 (bio-mocha_1.14-20220112.tar.gz) = 189a522418f12cbb04e6c5ccae130dbae1682907808f4cb594af4ff386651068 SIZE (bio-mocha_1.14-20220112.tar.gz) = 75910 -SHA256 (samtools-bcftools-1.14_GH0.tar.gz) = c9a814b1f0a13af19b45283f039d01b524e011d870ac95cd92e6907c3d1db6d1 -SIZE (samtools-bcftools-1.14_GH0.tar.gz) = 3326994 +SHA256 (samtools-bcftools-1.14-1.15_GH0.tar.gz) = 6b263270c62b156d2604150ca7e64b06a80282e049759b2668de24cbce1b1946 +SIZE (samtools-bcftools-1.14-1.15_GH0.tar.gz) = 3347901