diff --git a/biology/gcta/Makefile b/biology/gcta/Makefile index 5599f5c22fee..c9aef3210017 100644 --- a/biology/gcta/Makefile +++ b/biology/gcta/Makefile @@ -1,40 +1,51 @@ PORTNAME= gcta DISTVERSIONPREFIX= v DISTVERSION= 1.94.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Genome-wide Complex Trait Analysis WWW= https://cnsgenomics.com/software/gcta/index.html LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ spectra>0:math/spectra LIB_DEPENDS= libgsl.so:math/gsl \ libopenblas.so:math/openblas \ libsqlite3.so:databases/sqlite3 \ libzstd.so:archivers/zstd USES= cmake eigen:3 localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= jianyangqt GH_TUPLE= zhilizheng:plink-ng:3744540:plink/submods/plink-ng CONFIGURE_ENV+= EIGEN3_INCLUDE_DIR=${LOCALBASE}/include/eigen3 \ BOOST_INCLUDE_DIR=${LOCALBASE}/include/boost \ OPENBLAS=${LOCALBASE} \ SPECTRA_INCLUDE_DIR=${LOCALBASE}/include/Spectra LDFLAGS+= -fopenmp PLIST_FILES= bin/gcta64 bin/gcta +.include + +# Temporary hack for clang build errors: +# /usr/ports/biology/gcta/work/gcta-1.94.1/submods/plink-ng/2.0/plink2_base.h:1008:23: error: argument to '__builtin_neon_vshrq_n_v' must be a constant integer +# return R_CAST(VecW, _mm_srli_epi64(R_CAST(__m128i, vv), ct)); +# /usr/lib/clang/14.0.5/include/arm_neon.h:25260:24: note: expanded from macro 'vshrq_n_u64' +# __ret = (uint64x2_t) __builtin_neon_vshrq_n_v((int8x16_t)__s0, __p1, 51); +.if ${ARCH} == aarch64 +USE_GCC= yes +.endif + do-install: @${MKDIR} ${STAGEDIR}${PREFIX}/bin ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/gcta64 ${STAGEDIR}${PREFIX}/bin ${RLN} ${STAGEDIR}${PREFIX}/bin/gcta64 ${STAGEDIR}${PREFIX}/bin/gcta -.include +.include