diff --git a/science/py-pymatgen/Makefile b/science/py-pymatgen/Makefile
index b17cdd97b6bc..5719a1d7cde1 100644
--- a/science/py-pymatgen/Makefile
+++ b/science/py-pymatgen/Makefile
@@ -1,71 +1,68 @@
 PORTNAME=	pymatgen
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2025.1.23
+DISTVERSION=	2025.1.24
 CATEGORIES=	science python
 #MASTER_SITES=	PYPI # no tests
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Python Materials Genomics is a robust materials analysis code
 WWW=		https://pymatgen.org/ \
 		https://github.com/materialsproject/pymatgen
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:www/py-beautifulsoup@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}joblib>=1:devel/py-joblib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}monty>=2025.1.9:devel/py-monty@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}networkx>=2.7:math/py-networkx@${PY_FLAVOR} \
 		${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}palettable>=3.3.3:misc/py-palettable@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=2:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}plotly>=4.5.0:graphics/py-plotly@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pybtex>=0.24.0:textproc/py-pybtex@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>=2.32:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}ruamel.yaml>=0.17.0:devel/py-ruamel.yaml@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=1.13.0:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}spglib>=2.5.0:science/py-spglib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sympy>=1.3:math/py-sympy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tabulate>=0.9:devel/py-tabulate@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tqdm>=4.60:misc/py-tqdm@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}uncertainties>=3.1.4:math/py-uncertainties@${PY_FLAVOR}
+RUN_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}icet>0:science/py-icet@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}openbabel>0:science/py-openbabel@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}phonopy>0:science/py-phonopy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}seekpath>0:science/py-seekpath@${PY_FLAVOR} # optional dependencies
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pybtex>0:textproc/py-pybtex@${PY_FLAVOR}
 
 USES=		compiler:c++11-lang python
 USE_PYTHON=	pep517 cython concurrent autoplist pytest
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	materialsproject
 
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \
 		PMG_TEST_FILES_DIR=${WRKSRC}/tests/files \
 		DISPLAY=${DISPLAY} \
 		XAUTHORITY=${XAUTHORITY}
 TEST_WRKSRC=	${WRKSRC}/tests
 
 post-install: # strip binaries
 	@cd ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME} && ${STRIP_CMD} \
 		optimization/linear_assignment*.so \
 		optimization/neighbors*.so \
 		util/coord_cython*.so
 
-#tests as of 2025.1.23:
-# Results (4206.00s (1:10:05)):
-#    2743 passed
-#       9 failed
-#         - tests/analysis/test_chempot_diagram.py:71 TestChemicalPotentialDiagram.test_pca
-#         - tests/cli/test_pmg_analyze.py:13 test_pmg_analyze
-#         - tests/cli/test_pmg_diff.py:12 test_pmg_diff
-#         - tests/cli/test_pmg_plot.py:15 test_plot_xrd
-#         - tests/cli/test_pmg_plot.py:31 test_plot_dos
-#         - tests/cli/test_pmg_plot.py:47 test_plot_chgint
-#         - tests/cli/test_pmg_plot.py:63 test_plot_wrong_arg
-#         - tests/cli/test_pmg_structure.py:13 test_pmg_structure
-#         - tests/core/test_structure.py:1770 TestStructure.test_charge
+# tests as of 2025.1.23: see https://github.com/materialsproject/pymatgen/issues/4264
+# Results (4376.26s (1:12:56)):
+#    2814 passed
+#      36 failed
 #     194 skipped
+#     141 skipped
 
 .include <bsd.port.mk>
diff --git a/science/py-pymatgen/distinfo b/science/py-pymatgen/distinfo
index 8cf9be075657..d6168fc6f91b 100644
--- a/science/py-pymatgen/distinfo
+++ b/science/py-pymatgen/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1737700626
-SHA256 (materialsproject-pymatgen-v2025.1.23_GH0.tar.gz) = 68eafa7d148119a3aa739fd514f9f9cecfb03b316e41f29d3f87a84bb4872670
-SIZE (materialsproject-pymatgen-v2025.1.23_GH0.tar.gz) = 262615770
+TIMESTAMP = 1737778469
+SHA256 (materialsproject-pymatgen-v2025.1.24_GH0.tar.gz) = 4b53c755e8359f2b6400eb7050a9aa2b1cadd611345cd9ab16ab25a5164fe804
+SIZE (materialsproject-pymatgen-v2025.1.24_GH0.tar.gz) = 263279211