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Thu, Sep 10

jwb committed R11:421acd8613b1: devel/mongo-cxx-driver: Update to 4.5.3.
Thu, Sep 10, 10:32 PM
jwb committed R11:4a5074525bbe: biology/py-goatools: Update to 1.6.5.
Thu, Sep 10, 5:42 PM
jwb committed R11:fe629e5a5b2c: ftp/py-ftpretty: Wrapper for FTP operations.
Thu, Sep 10, 5:39 PM
jwb committed R11:4dfff98fb505: biology/picard-tools: Update to 3.5.0.
Thu, Sep 10, 11:52 AM

Tue, Sep 8

jwb committed R11:edb2f386ee20: biology/p5-transdecoder: Change WWW for portscout.
Tue, Sep 8, 8:16 PM
jwb committed R11:0756c8333fad: biology/p5-transdecoder: Update to 6.0.0.
Tue, Sep 8, 8:12 PM

Mon, Sep 7

jwb committed R11:f934600d16be: biology/py-ont-fast5-api: Update to 4.1.3.
Mon, Sep 7, 12:11 PM

Sun, Sep 6

jwb committed R11:0feb3f7753c7: biology/pear-merger: Release to ports@.
Sun, Sep 6, 7:35 PM
jwb committed R11:8155a55575f0: devel/py-rich-click: Update to 1.9.9.
Sun, Sep 6, 12:11 PM

Sat, Sep 5

jwb committed R11:a93308aab1d1: science/afni: Remove conflict with science/nifticlib.
Sat, Sep 5, 6:31 PM
jwb committed R11:ab62a2dc0745: science/nifticlib: Update to 3.0.1.
Sat, Sep 5, 6:27 PM

Fri, Sep 4

jwb committed R11:336ad90a0c16: biology/bolt-lmm: Update to 2.5.
Fri, Sep 4, 9:16 PM
jwb committed R11:c001466376ff: biology/jellyfish: Update to 2.3.1.
Fri, Sep 4, 2:51 PM
jwb committed R11:3633feba9f5d: devel/mongo-cxx-driver: Update to 4.5.2.
Fri, Sep 4, 2:26 PM
jwb committed R11:779b0ad35f96: biology/gmap: Update to 2025.07.31.
Fri, Sep 4, 2:23 PM
jwb committed R11:48edef8c56e5: deskutils/coregarage: Update to 5.0.1.
Fri, Sep 4, 12:39 PM
jwb committed R11:e2572e7d4ba0: deskutils/libcprime: Update to 5.0.1.
Fri, Sep 4, 12:39 PM

Thu, Sep 3

jwb committed R11:5e7080fe7347: biology/py-macs2: Remove.
Thu, Sep 3, 2:25 PM

Tue, Sep 1

jwb committed R11:92b409e96b14: biology/freebayes: Update to 1.3.10.
Tue, Sep 1, 9:37 PM
jwb committed R11:c3d47bb8f5ff: sysutils/auto-admin: Update to 0.8.5.6.
Tue, Sep 1, 12:53 AM

Mon, Aug 31

jwb committed R11:7b5805c0b6db: biology/ucsc-userapps: Update to v502.
Mon, Aug 31, 9:41 PM
jwb committed R11:148f5ec1fb1e: biology/bbmap: Update to 40.02.
Mon, Aug 31, 5:03 PM
jwb committed R11:c0906141f5ab: biology/bio-mocha: Update to 1.22.
Mon, Aug 31, 4:06 PM
jwb committed R11:b426e0c5effa: biology/hisat2: Update to 2.2.3.
Mon, Aug 31, 3:55 PM
jwb committed R11:bab539cb567f: science/csvtk: Update golang:sys submodule version.
Mon, Aug 31, 12:09 PM
jwb committed R11:af95ff2580d2: biology/ddocent: Deprecate.
Mon, Aug 31, 11:48 AM
jwb committed R11:49ceafd4138e: biology/ddocent: Deprecate.
Mon, Aug 31, 11:47 AM

Sun, Aug 30

jwb committed R11:a2061b93bab5: devel/lnphost: Deprecate.
Sun, Aug 30, 8:29 PM
jwb committed R11:9414e65491ef: devel/lnphost: Deprecate.
Sun, Aug 30, 8:28 PM
jwb committed R11:efc7bb032ee6: devel/py-rich-click: Update to 1.9.8.
Sun, Aug 30, 12:21 PM

Sat, Aug 29

jwb committed R11:c5c8b2f462fc: science/orthanc-dicomweb: Update to 1.24.
Sat, Aug 29, 11:16 PM
jwb committed R11:94f1351b07dd: science/orthanc-mysql: Bump portrevision.
Sat, Aug 29, 11:16 PM
jwb committed R11:deb57110567c: science/orthanc: Clean up pkg-descr.
Sat, Aug 29, 10:48 PM
jwb committed R11:57babb6782a1: science/orthanc-postgresql: Update to 10.3.
Sat, Aug 29, 10:40 PM
jwb committed R11:6f488f98481f: science/orthanc: Update to 1.13.0.
Sat, Aug 29, 10:40 PM

Fri, Aug 28

jwb committed R11:3ac008549d9b: net/py-google-cloud-pubsub: Update to 2.39.2.
Fri, Aug 28, 10:21 PM
jwb committed R11:2a85899728ad: biology/py-pywgsim: Update to 0.6.0.
Fri, Aug 28, 9:55 PM
jwb committed R11:e25594e87f0c: devel/mongo-cxx-driver: Update to 4.5.1.
Fri, Aug 28, 6:11 PM
jwb committed R11:7fbbfb679cd9: biology/py-pydeseq2: Update to 0.5.4.
Fri, Aug 28, 12:13 PM

Thu, Aug 27

jwb committed R11:292666434f76: biology/subread: Update to 2.1.1.
Thu, Aug 27, 6:15 PM
jwb committed R11:fa7d8d2cb91e: biology/py-dna-features-viewer: Update to 3.1.5.
Thu, Aug 27, 6:11 PM
jwb committed R11:3859635db7c8: devel/R-cran-getopt: Update to 1.21.1.
Thu, Aug 27, 11:19 AM
jwb committed R11:e92bdc925e15: biology/py-crossmap: Update to 0.7.4.
Thu, Aug 27, 1:19 AM

Sun, Aug 23

jwb committed R11:247bda0d6133: sysutils/Makefile: Remove filevercmp.
Sun, Aug 23, 8:05 PM
jwb committed R11:f93bee5acf06: sysutils/spcm: Update to 0.5.9.
Sun, Aug 23, 12:25 PM
jwb committed R11:169b5109c41e: biology/canu: Update to 2.3.
Sun, Aug 23, 12:09 PM
jwb committed R11:09efbd99ed4e: sysutils/ganglia-monitor-core: Fix invalid expiration date.
Sun, Aug 23, 11:14 AM
jwb committed R11:249779eed234: sysutils/filevercmp: Remove.
Sun, Aug 23, 11:10 AM
jwb committed R11:a2b7ca40cf12: ganglia-monitor-core: Deprecate.
Sun, Aug 23, 12:23 AM

Aug 11 2026

jwb committed R11:3fe10594080a: biology/bifrost: Update to 1.3.9.
Aug 11 2026, 9:47 PM
jwb committed R11:021a24800902: MOVED: Add entry for removed biology/py-macs2.
Aug 11 2026, 8:41 PM
jwb committed R11:08256be5a858: biology/py-macs2: Remove.
Aug 11 2026, 5:47 PM

Jul 11 2026

jwb committed R11:b44b3ccb00d6: biology/htslib: Update to 1.24.
Jul 11 2026, 7:33 PM
jwb committed R11:1ef610474aab: biology/samtools: Update to 1.24.
Jul 11 2026, 7:33 PM
jwb committed R11:c688db2d7658: biology/bcftools: Update to 1.24.
Jul 11 2026, 7:33 PM

Jul 4 2026

jwb committed R11:4503d4fcebc4: biology/chip-seq: Update to 0.3.1.
Jul 4 2026, 12:43 AM
jwb committed R11:117cd80d6d50: biology/atac-seq: Update to 0.3.1.
Jul 4 2026, 12:42 AM
jwb committed R11:1f8de6517b90: biology/py-goatools: Fix build with python 3.12.
Jul 4 2026, 12:37 AM

Jun 30 2026

jwb committed R11:3c4e84e29e47: science/orthanc-postgresql: Update to 10.2.
Jun 30 2026, 12:15 PM

Jun 21 2026

jwb committed R11:66f2bf448dd3: science/csvtk: Update to 0.37.0.
Jun 21 2026, 12:39 PM

Jun 2 2026

jwb committed R11:3f253a0d77dd: sysutils/desktop-installer: Update to 1.2.0.1.
Jun 2 2026, 12:36 AM

Jun 1 2026

jwb committed R11:153493637da7: sysutils/desktop-installer: Update to 1.2.0.
Jun 1 2026, 11:34 AM
jwb committed R11:b59855e4a25d: sysutils/auto-admin: Update to 0.8.5.
Jun 1 2026, 11:31 AM

May 29 2026

jwb committed R11:b1346a408014: biology/sra-tools: lib64 -> lib.
May 29 2026, 9:54 PM

May 20 2026

jwb committed R11:fb032e31573e: biology/minimap2: Update to 2.31.
May 20 2026, 12:17 PM

May 12 2026

jwb committed R11:7bb1b42592d5: biology/sra-tools: Patch out extraneous scripts.
May 12 2026, 11:59 PM

May 10 2026

jwb committed R11:633db178d7cb: archivers/streamvbyte: Add patch to repo.
May 10 2026, 11:47 AM

May 9 2026

jwb committed R11:a33cabba24be: archivers/streamvbyte: Update to 3.0.0.
May 9 2026, 9:36 PM

May 3 2026

jwb committed R11:c866de255242: biology/vsearch: Update to 2.31.0.
May 3 2026, 4:25 PM

Apr 27 2026

jwb committed R11:6a27a4d51a75: biology/py-deeptools: Update to 3.5.6.
Apr 27 2026, 3:39 PM
jwb committed R11:793012e57cb4: biology/py-py2bit: Update to 1.0.1.
Apr 27 2026, 11:33 AM

Apr 25 2026

jwb committed R11:13a2adc4e943: devel/R-cran-optparse: Update to 1.8.2.
Apr 25 2026, 6:09 PM

Apr 23 2026

jwb committed R11:f50ffed429f0: science/orthanc-postgresql: Update to 10.1.
Apr 23 2026, 1:09 PM
jwb committed R11:4a6c7c329579: science/orthanc-dicomweb: Update to 1.23.
Apr 23 2026, 1:09 PM
jwb committed R11:4ec8a8710655: science/orthanc-mysql: Update to allow build alongside orthanc 1.12.11.
Apr 23 2026, 1:09 PM
jwb committed R11:48e5e15f79ad: science/orthanc: Update to 1.12.11.
Apr 23 2026, 1:09 PM

Apr 15 2026

jwb committed R11:b72964999543: x11/lumina-core: Patch to reduce screensaver glare.
Apr 15 2026, 12:27 PM

Apr 13 2026

jwb committed R11:945218c4828c: biology/gffread: Update to 0.12.9.
Apr 13 2026, 1:22 PM

Mar 29 2026

jwb committed R11:726185a559aa: biology/htslib: Update to 1.23.1.
Mar 29 2026, 1:25 PM
jwb committed R11:e2110f368446: biology/bcftools: Update to 1.23.1.
Mar 29 2026, 1:25 PM
jwb committed R11:0d69b76f0fd1: biology/samtools: Update to 1.23.1.
Mar 29 2026, 1:25 PM

Mar 28 2026

jwb committed R11:32b965a00ecb: science/orthanc: Use unversioned dcmtk DATADIR.
Mar 28 2026, 10:36 PM
jwb committed R11:08eb51d89e26: biology/vsearch: Update to 2.30.6.
Mar 28 2026, 12:13 PM
jwb committed R11:6df3d90f95a7: graphics/dcmtk: Add unversioned link to DATADIR.
Mar 28 2026, 11:35 AM

Mar 26 2026

jwb committed R11:3a1985c6eda0: biology/sra-tools: Unbreak distfile.
Mar 26 2026, 3:16 AM
jwb committed R11:1dbce6f79e25: biology/sra-tools: Update to 3.4.1.
Mar 26 2026, 12:09 AM

Mar 23 2026

jwb committed R11:a2a73aef8223: biology/wfa2-lib: Update to 2.3.6.
Mar 23 2026, 9:44 PM

Mar 22 2026

jwb committed R11:f3a8e8b50e62: biology/fastp: Update to 1.2.0.
Mar 22 2026, 12:59 PM

Mar 11 2026

jwb committed R11:5c3d5d7070f2: biology/vsearch: Update to 2.30.5.
Mar 11 2026, 1:42 PM

Mar 10 2026

jwb committed R11:faadb5898d64: biology/salmon: Unbreak: Relax libgff version requirement.
Mar 10 2026, 11:05 PM

Mar 7 2026

jwb committed R11:2f2d487a9f96: biology/libgff: Update to 2.0.1.
Mar 7 2026, 7:07 PM

Mar 5 2026

jwb committed R11:9c59e8acfec3: biology/py-macs3: Update to 3.0.4.
Mar 5 2026, 1:31 PM
jwb committed R11:746a50b935da: biology/atac-seq: Update to 0.3.0.
Mar 5 2026, 12:44 PM
jwb committed R11:cde38c495ee7: biology/bowtie2: Update to 2.5.5.
Mar 5 2026, 12:43 AM

Mar 4 2026

jwb committed R11:c05bc1293c21: biology/rna-seq: Update to 0.2.0.
Mar 4 2026, 11:39 PM
jwb committed R11:64ae45e8c91f: biology/kallisto: Update to 0.52.0,1.
Mar 4 2026, 11:32 PM
jwb committed R11:81d745d79908: sysutils/auto-admin: Update to 0.8.4.24.
Mar 4 2026, 2:26 PM

Feb 4 2026

jwb committed R11:6cef9ba6ad8f: sysutils/desktop-installer: Update to 1.1.1.31.
Feb 4 2026, 4:56 PM
jwb committed R11:1a92885dedaa: sysutils/auto-admin: Update to 0.8.4.22.
Feb 4 2026, 4:52 PM

Feb 1 2026

jwb committed R11:b4381c792276: biology/hisat2: Update to 2.2.2.
Feb 1 2026, 5:22 PM
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