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jwb committed R11:3a1985c6eda0: biology/sra-tools: Unbreak distfile.
Thu, Mar 26, 3:16 AM
jwb committed R11:1dbce6f79e25: biology/sra-tools: Update to 3.4.1.
Thu, Mar 26, 12:09 AM

Mon, Mar 23

jwb committed R11:a2a73aef8223: biology/wfa2-lib: Update to 2.3.6.
Mon, Mar 23, 9:44 PM

Sun, Mar 22

jwb committed R11:f3a8e8b50e62: biology/fastp: Update to 1.2.0.
Sun, Mar 22, 12:59 PM

Wed, Mar 11

jwb committed R11:5c3d5d7070f2: biology/vsearch: Update to 2.30.5.
Wed, Mar 11, 1:42 PM

Tue, Mar 10

jwb committed R11:faadb5898d64: biology/salmon: Unbreak: Relax libgff version requirement.
Tue, Mar 10, 11:05 PM

Sat, Mar 7

jwb committed R11:2f2d487a9f96: biology/libgff: Update to 2.0.1.
Sat, Mar 7, 7:07 PM

Thu, Mar 5

jwb committed R11:9c59e8acfec3: biology/py-macs3: Update to 3.0.4.
Thu, Mar 5, 1:31 PM
jwb committed R11:746a50b935da: biology/atac-seq: Update to 0.3.0.
Thu, Mar 5, 12:44 PM
jwb committed R11:cde38c495ee7: biology/bowtie2: Update to 2.5.5.
Thu, Mar 5, 12:43 AM

Wed, Mar 4

jwb committed R11:c05bc1293c21: biology/rna-seq: Update to 0.2.0.
Wed, Mar 4, 11:39 PM
jwb committed R11:64ae45e8c91f: biology/kallisto: Update to 0.52.0,1.
Wed, Mar 4, 11:32 PM
jwb committed R11:81d745d79908: sysutils/auto-admin: Update to 0.8.4.24.
Wed, Mar 4, 2:26 PM

Feb 4 2026

jwb committed R11:6cef9ba6ad8f: sysutils/desktop-installer: Update to 1.1.1.31.
Feb 4 2026, 4:56 PM
jwb committed R11:1a92885dedaa: sysutils/auto-admin: Update to 0.8.4.22.
Feb 4 2026, 4:52 PM

Feb 1 2026

jwb committed R11:b4381c792276: biology/hisat2: Update to 2.2.2.
Feb 1 2026, 5:22 PM
jwb committed R11:b52b3f078fe9: devel/py-rich-click: Update to 1.9.7.
Feb 1 2026, 3:44 PM

Jan 31 2026

jwb committed R11:b03d74dfecbc: sysutils/auto-admin: Update to 0.8.4.14.
Jan 31 2026, 6:27 PM

Jan 30 2026

jwb committed R11:e826eb2ffb70: devel/py-rich-click: Update to 1.9.6.
Jan 30 2026, 5:49 PM

Jan 22 2026

jwb committed R11:e14df5e88aa2: biology/vsearch: Update to 2.30.4.
Jan 22 2026, 9:07 PM

Jan 14 2026

jwb committed R11:07cd81ad096d: biology/vsearch: Update to 2.30.3.
Jan 14 2026, 12:53 AM

Jan 11 2026

jwb committed R11:aff412a94985: biology/sra-tools: Unbreak with extra JDK present.
Jan 11 2026, 8:40 PM

Dec 21 2025

jwb committed R11:e8c5f0d0bdcf: sysutils/desktop-installer: Update to 1.1.1.13.
Dec 21 2025, 3:39 PM
jwb committed R11:9220277b3245: sysutils/auto-admin: Update to 0.8.4.6.
Dec 21 2025, 3:33 PM

Dec 20 2025

jwb committed R11:060b82b8c6a7: biology/vsearch: Add patch for FreeBSD 16.
Dec 20 2025, 4:30 PM

Dec 18 2025

jwb committed R11:be3bc42e2e6d: biology/vsearch: Update to 2.30.2.
Dec 18 2025, 7:14 PM
jwb committed R11:ab2ef91341ba: science/csvtk: Update to 0.36.0.
Dec 18 2025, 3:58 PM
jwb committed R11:6a98f17c690d: biology/biostar-tools: Update to 2.1.
Dec 18 2025, 2:40 PM
jwb committed R11:9b9deea48332: biology/R-cran-BiocManager: Update to 1.30.27.
Dec 18 2025, 12:25 PM

Dec 17 2025

jwb committed R11:0b9fcf87c4ad: science/orthanc-postgresql: Update to 10.0.
Dec 17 2025, 8:28 PM
jwb committed R11:0c9f38b3b81f: biology/sra-tools: Update to 3.3.0.
Dec 17 2025, 4:19 PM

Dec 16 2025

jwb committed R11:67021eded363: devel/libxtend: Update to 0.2.1.10.
Dec 16 2025, 12:08 PM

Dec 11 2025

jwb committed R11:23fef9d1fd65: sysutils/auto-admin: Update to 0.8.4.2.
Dec 11 2025, 7:20 PM

Dec 7 2025

jwb committed R11:cf682fa21f29: sysutils/auto-admin: Update to 0.8.4.
Dec 7 2025, 5:07 PM

Nov 28 2025

jwb committed R11:65a3f08310c6: science/orthanc-mysql: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:4559017c3eeb: science/orthanc-postgresql: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:f83215f2a1d5: science/orthanc-dicomweb: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:d9a91947b3c2: science/orthanc: Update to 1.12.10.
Nov 28 2025, 2:26 PM

Nov 26 2025

jwb committed R11:836e360c06bc: sysutils/diskimage-tools: Update to 0.3.1.5.
Nov 26 2025, 7:10 PM

Nov 13 2025

jwb committed R11:753fe08b6b51: math/rapid: DEPRECATED -> BROKEN.
Nov 13 2025, 12:47 PM

Oct 30 2025

jwb committed R11:c123af95436a: net/py-google-cloud-pubsub: Update to 2.32.0.
Oct 30 2025, 12:43 AM

Oct 29 2025

jwb committed R11:7448f577d89a: science/csvtk: Update to 0.35.0.
Oct 29 2025, 1:51 PM

Oct 27 2025

jwb committed R11:0bbd21d1998d: science/orthanc-postgresql: Update to 9.0.
Oct 27 2025, 5:12 PM
jwb committed R11:1e51eaa38294: science/orthanc-mysql: Update to 5.2.
Oct 27 2025, 5:07 PM
jwb committed R11:a61fa75a176d: science/orthanc-dicomweb: Update to 1.21.
Oct 27 2025, 4:58 PM
jwb committed R11:36875cd4c2bd: science/orthanc-webviewer: Update to 2.10.
Oct 27 2025, 4:47 PM
jwb committed R11:4b787786f9f1: science/orthanc: Take maintainership.
Oct 27 2025, 1:36 PM

Oct 26 2025

jwb committed R11:97ce6f67477f: sysutils/auto-admin: Update to 0.8.3.30.
Oct 26 2025, 9:48 PM
jwb committed R11:a5ea34ce1342: sysutils/auto-admin: Update to 0.8.3.30.
Oct 26 2025, 9:46 PM

Oct 25 2025

jwb committed R11:d2dff4903648: science/orthanc: Update to 1.12.9 and unbreak.
Oct 25 2025, 1:02 AM

Oct 5 2025

jwb committed R11:f07bc6e23dc6: biology/vsearch: Update to 2.30.1.
Oct 5 2025, 6:28 PM

Oct 3 2025

jwb committed R11:e4b0269fe7a7: math/rapid: Deprecate.
Oct 3 2025, 12:32 PM

Oct 1 2025

jwb committed R11:380ec0827846: net/py-google-cloud-pubsub: Python interface to Google pubsub.
Oct 1 2025, 2:25 AM

Sep 30 2025

jwb committed R11:b21bd86a1be5: sysutils/auto-admin: Update to 0.8.3.28.
Sep 30 2025, 8:29 PM

Sep 21 2025

jwb committed R11:ef680967ddb6: devel/mongo-c-driver: Enable SRV option by default.
Sep 21 2025, 11:25 PM
jwb committed R11:613bcfe053d3: sysutils/desktop-installer: Update to 1.1.1.4.
Sep 21 2025, 2:20 PM
jwb committed R11:39cc1c08f8a1: sysutils/auto-admin: Update to 0.8.3.27.
Sep 21 2025, 2:17 PM

Sep 19 2025

jwb committed R11:d94c7a1a9ee3: devel/cppcodec: Update to 0.2-11.
Sep 19 2025, 3:14 PM

Sep 16 2025

jwb committed R11:4cbdaf82ef44: x11/coreterminal: Update to 5.0.0.
Sep 16 2025, 1:44 PM
jwb committed R11:aca2d57f1b19: deskutils/coregarage: Update to 5.0.0.
Sep 16 2025, 1:44 PM
jwb committed R11:57f1bc675fa6: deskutils/libcprime: Update to 5.0.0.
Sep 16 2025, 1:35 PM
jwb committed R11:1c2ccb4be11c: archivers/libarchive-qt: Update to 2.0.8.
Sep 16 2025, 1:35 PM

Sep 14 2025

jwb committed R11:a706669299c2: comms/cutecom: Update to 0.60.0-RC1.
Sep 14 2025, 8:04 PM

Sep 10 2025

jwb committed R11:4ea563b952a6: sysutils/desktop-installer: Update to 1.1.1.3.
Sep 10 2025, 4:06 PM

Sep 7 2025

jwb committed R11:3841f8ba550a: sysutils/auto-admin: Update to 0.8.3.25.
Sep 7 2025, 8:35 PM

Sep 6 2025

jwb committed R11:c209be0887f1: devel/Makefile: cpp-codec -> cppcodec.
Sep 6 2025, 7:48 PM

Sep 5 2025

jwb committed R11:092acfc2ac18: devel/mongo-cxx-driver: MongoDB C++ driver.
Sep 5 2025, 11:52 PM
jwb committed R11:5679cabff6b1: devel/cppcodec: Library to encode/decode base64, base64url, etc..
Sep 5 2025, 11:30 PM

Aug 26 2025

jwb committed R11:81ad72065ddc: biology/salmon: Update to tag 1.10.3.
Aug 26 2025, 11:33 AM
jwb committed R11:ef86e09b7e3a: biology/ncbi-blast+: Update to 2.17.0.
Aug 26 2025, 11:28 AM

Aug 24 2025

jwb committed R11:9890f0cfefbe: sysutils/auto-admin: Update to 0.8.3.25.
Aug 24 2025, 11:25 AM

Aug 21 2025

jwb committed R11:5d8f84ce55c7: biology/bbmap: Update to 39.34.
Aug 21 2025, 8:33 PM

Aug 14 2025

jwb committed R11:486b568db0d0: sysutils/auto-admin: Update to 0.8.3.24.
Aug 14 2025, 7:09 PM

Aug 5 2025

jwb added a comment to D51702: kernel: Allow unprivileged chroot by default.

It occurred to me that it might be good to set NO_NEW_PRIVS automatically when chroot is not invoked by root, rather than error out and make the user specify -n.

Aug 5 2025, 3:00 PM

Aug 3 2025

jwb added a comment to D51702: kernel: Allow unprivileged chroot by default.

For chroot(8), it seems a little cryptic to only mention security.bsd.unprivileged_chroot in the -n flag section. Might I suggest adding a paragraph like the following up-top, before the options descriptions:

Aug 3 2025, 12:20 AM

Jul 27 2025

jwb committed R11:ace12788b0db: biology/salmon: Update to tag 1.10.3.
Jul 27 2025, 9:13 PM

Jul 24 2025

jwb committed R11:c850bf3a31c1: biology/ncbi-blast+: Update to 2.17.0.
Jul 24 2025, 9:06 PM

Jun 28 2025

jwb committed R11:538a8718e2ff: biology/py-pydeseq2: Update to 0.5.2.
Jun 28 2025, 11:48 AM

Jun 21 2025

jwb committed R11:890b1c25be4d: biology/bcf-score: Use latest versions of hstlib and bcftools.
Jun 21 2025, 10:18 PM
jwb committed R11:49752ef6cd89: biology/bio-mocha: Use latest versions of htslib and bcftools.
Jun 21 2025, 10:09 PM
jwb committed R11:14102a0178f9: biology/minimap2: Remove extraneous file that snuck in the last commit.
Jun 21 2025, 9:48 PM

Jun 16 2025

jwb committed R11:027b959425c8: biology/minimap2: Update to 2.30.
Jun 16 2025, 1:10 PM

Jun 14 2025

jwb committed R11:ec7391b149b9: devel/isa-l: Enable build on aarch64.
Jun 14 2025, 12:18 PM

Jun 11 2025

jwb committed R11:e91e2f54bddb: biology/py-pydeseq2: Python reimplementation of the DESeq2 R package.
Jun 11 2025, 2:25 PM
jwb committed R11:cfe792f0ddf0: math/py-formulaic-contrasts: Build arbitrary contrasts formulaic models.
Jun 11 2025, 2:21 PM
jwb committed R11:0b1ab7cf4c4d: devel/py-joblib: Unbreak build.
Jun 11 2025, 2:11 PM

Jun 7 2025

jwb committed R11:b902f8f425a4: biology/fastp: Update to 0.26.0.
Jun 7 2025, 12:32 PM

Jun 5 2025

jwb committed R11:45095055298e: sysutils/auto-admin: Update to 0.8.3.7.
Jun 5 2025, 12:45 PM

Jun 4 2025

jwb committed R11:cb80427150ce: biology/seqtk: Update to 1.5.
Jun 4 2025, 2:21 PM
jwb committed R11:3a7978fed606: biology/bcftools: Update to 1.22.
Jun 4 2025, 1:26 PM
jwb committed R11:3c62a6836854: biology/samtools: Update to 1.22.
Jun 4 2025, 1:26 PM
jwb committed R11:c8a79b9a3b12: biology/htslib: Update to 1.22.
Jun 4 2025, 1:26 PM

Jun 1 2025

jwb committed R11:78e546084e93: biology/fastp: Update to 0.25.0.
Jun 1 2025, 1:28 PM

May 30 2025

jwb committed R11:b3918a5e6eea: biology/fastp: Update to 0.24.3.
May 30 2025, 1:07 PM

May 27 2025

jwb committed R11:b15df322b48c: biology/kallisto: Remove USE_GCC, fix build with clang19.
May 27 2025, 2:20 PM
jwb committed R11:bba37490f132: biology/bifrost: Remove USE_GCC, fix build with clang19.
May 27 2025, 2:09 PM

May 25 2025

jwb committed R11:7611c373bf8f: biology/fasda: Update to 0.2.0.1.
May 25 2025, 2:27 PM

May 23 2025

jwb committed R11:b3b1a391c149: biology/megahit: Update to 1.2.9.20.
May 23 2025, 12:34 PM

May 20 2025

jwb committed R11:51c1f17ce70a: biology/haplohseq: Update to 0.1.2.3.
May 20 2025, 11:33 PM
jwb committed R11:bd2f753fe114: biology/lamarc: New maintainer hayzam@alchemilla.io.
May 20 2025, 11:17 PM
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