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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (456 w, 6 d)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Today

jwb committed R11:efc7bb032ee6: devel/py-rich-click: Update to 1.9.8.
Sun, Aug 30, 12:21 PM

Yesterday

jwb committed R11:c5c8b2f462fc: science/orthanc-dicomweb: Update to 1.24.
Sat, Aug 29, 11:16 PM
jwb committed R11:94f1351b07dd: science/orthanc-mysql: Bump portrevision.
Sat, Aug 29, 11:16 PM
jwb committed R11:deb57110567c: science/orthanc: Clean up pkg-descr.
Sat, Aug 29, 10:48 PM
jwb committed R11:57babb6782a1: science/orthanc-postgresql: Update to 10.3.
Sat, Aug 29, 10:40 PM
jwb committed R11:6f488f98481f: science/orthanc: Update to 1.13.0.
Sat, Aug 29, 10:40 PM

Fri, Aug 28

jwb committed R11:3ac008549d9b: net/py-google-cloud-pubsub: Update to 2.39.2.
Fri, Aug 28, 10:21 PM
jwb committed R11:2a85899728ad: biology/py-pywgsim: Update to 0.6.0.
Fri, Aug 28, 9:55 PM
jwb committed R11:e25594e87f0c: devel/mongo-cxx-driver: Update to 4.5.1.
Fri, Aug 28, 6:11 PM
jwb committed R11:7fbbfb679cd9: biology/py-pydeseq2: Update to 0.5.4.
Fri, Aug 28, 12:13 PM

Thu, Aug 27

jwb committed R11:292666434f76: biology/subread: Update to 2.1.1.
Thu, Aug 27, 6:15 PM
jwb committed R11:fa7d8d2cb91e: biology/py-dna-features-viewer: Update to 3.1.5.
Thu, Aug 27, 6:11 PM
jwb committed R11:3859635db7c8: devel/R-cran-getopt: Update to 1.21.1.
Thu, Aug 27, 11:19 AM
jwb committed R11:e92bdc925e15: biology/py-crossmap: Update to 0.7.4.
Thu, Aug 27, 1:19 AM

Sun, Aug 23

jwb committed R11:247bda0d6133: sysutils/Makefile: Remove filevercmp.
Sun, Aug 23, 8:05 PM
jwb committed R11:f93bee5acf06: sysutils/spcm: Update to 0.5.9.
Sun, Aug 23, 12:25 PM
jwb committed R11:169b5109c41e: biology/canu: Update to 2.3.
Sun, Aug 23, 12:09 PM
jwb committed R11:09efbd99ed4e: sysutils/ganglia-monitor-core: Fix invalid expiration date.
Sun, Aug 23, 11:14 AM
jwb committed R11:249779eed234: sysutils/filevercmp: Remove.
Sun, Aug 23, 11:10 AM
jwb committed R11:a2b7ca40cf12: ganglia-monitor-core: Deprecate.
Sun, Aug 23, 12:23 AM

Tue, Aug 11

jwb committed R11:3fe10594080a: biology/bifrost: Update to 1.3.9.
Tue, Aug 11, 9:47 PM
jwb committed R11:021a24800902: MOVED: Add entry for removed biology/py-macs2.
Tue, Aug 11, 8:41 PM
jwb committed R11:08256be5a858: biology/py-macs2: Remove.
Tue, Aug 11, 5:47 PM

Jul 11 2026

jwb committed R11:b44b3ccb00d6: biology/htslib: Update to 1.24.
Jul 11 2026, 7:33 PM
jwb committed R11:1ef610474aab: biology/samtools: Update to 1.24.
Jul 11 2026, 7:33 PM
jwb committed R11:c688db2d7658: biology/bcftools: Update to 1.24.
Jul 11 2026, 7:33 PM

Jul 4 2026

jwb committed R11:4503d4fcebc4: biology/chip-seq: Update to 0.3.1.
Jul 4 2026, 12:43 AM
jwb committed R11:117cd80d6d50: biology/atac-seq: Update to 0.3.1.
Jul 4 2026, 12:42 AM
jwb committed R11:1f8de6517b90: biology/py-goatools: Fix build with python 3.12.
Jul 4 2026, 12:37 AM

Jun 30 2026

jwb committed R11:3c4e84e29e47: science/orthanc-postgresql: Update to 10.2.
Jun 30 2026, 12:15 PM

Jun 21 2026

jwb committed R11:66f2bf448dd3: science/csvtk: Update to 0.37.0.
Jun 21 2026, 12:39 PM

Jun 2 2026

jwb committed R11:3f253a0d77dd: sysutils/desktop-installer: Update to 1.2.0.1.
Jun 2 2026, 12:36 AM

Jun 1 2026

jwb committed R11:153493637da7: sysutils/desktop-installer: Update to 1.2.0.
Jun 1 2026, 11:34 AM
jwb committed R11:b59855e4a25d: sysutils/auto-admin: Update to 0.8.5.
Jun 1 2026, 11:31 AM

May 29 2026

jwb committed R11:b1346a408014: biology/sra-tools: lib64 -> lib.
May 29 2026, 9:54 PM

May 20 2026

jwb committed R11:fb032e31573e: biology/minimap2: Update to 2.31.
May 20 2026, 12:17 PM

May 12 2026

jwb committed R11:7bb1b42592d5: biology/sra-tools: Patch out extraneous scripts.
May 12 2026, 11:59 PM

May 10 2026

jwb committed R11:633db178d7cb: archivers/streamvbyte: Add patch to repo.
May 10 2026, 11:47 AM

May 9 2026

jwb committed R11:a33cabba24be: archivers/streamvbyte: Update to 3.0.0.
May 9 2026, 9:36 PM

May 3 2026

jwb committed R11:c866de255242: biology/vsearch: Update to 2.31.0.
May 3 2026, 4:25 PM

Apr 27 2026

jwb committed R11:6a27a4d51a75: biology/py-deeptools: Update to 3.5.6.
Apr 27 2026, 3:39 PM
jwb committed R11:793012e57cb4: biology/py-py2bit: Update to 1.0.1.
Apr 27 2026, 11:33 AM

Apr 25 2026

jwb committed R11:13a2adc4e943: devel/R-cran-optparse: Update to 1.8.2.
Apr 25 2026, 6:09 PM

Apr 23 2026

jwb committed R11:f50ffed429f0: science/orthanc-postgresql: Update to 10.1.
Apr 23 2026, 1:09 PM
jwb committed R11:4a6c7c329579: science/orthanc-dicomweb: Update to 1.23.
Apr 23 2026, 1:09 PM
jwb committed R11:4ec8a8710655: science/orthanc-mysql: Update to allow build alongside orthanc 1.12.11.
Apr 23 2026, 1:09 PM
jwb committed R11:48e5e15f79ad: science/orthanc: Update to 1.12.11.
Apr 23 2026, 1:09 PM

Apr 15 2026

jwb committed R11:b72964999543: x11/lumina-core: Patch to reduce screensaver glare.
Apr 15 2026, 12:27 PM

Apr 13 2026

jwb committed R11:945218c4828c: biology/gffread: Update to 0.12.9.
Apr 13 2026, 1:22 PM

Mar 29 2026

jwb committed R11:726185a559aa: biology/htslib: Update to 1.23.1.
Mar 29 2026, 1:25 PM
jwb committed R11:e2110f368446: biology/bcftools: Update to 1.23.1.
Mar 29 2026, 1:25 PM
jwb committed R11:0d69b76f0fd1: biology/samtools: Update to 1.23.1.
Mar 29 2026, 1:25 PM

Mar 28 2026

jwb committed R11:32b965a00ecb: science/orthanc: Use unversioned dcmtk DATADIR.
Mar 28 2026, 10:36 PM
jwb committed R11:08eb51d89e26: biology/vsearch: Update to 2.30.6.
Mar 28 2026, 12:13 PM
jwb committed R11:6df3d90f95a7: graphics/dcmtk: Add unversioned link to DATADIR.
Mar 28 2026, 11:35 AM

Mar 26 2026

jwb committed R11:3a1985c6eda0: biology/sra-tools: Unbreak distfile.
Mar 26 2026, 3:16 AM
jwb committed R11:1dbce6f79e25: biology/sra-tools: Update to 3.4.1.
Mar 26 2026, 12:09 AM

Mar 23 2026

jwb committed R11:a2a73aef8223: biology/wfa2-lib: Update to 2.3.6.
Mar 23 2026, 9:44 PM

Mar 22 2026

jwb committed R11:f3a8e8b50e62: biology/fastp: Update to 1.2.0.
Mar 22 2026, 12:59 PM

Mar 11 2026

jwb committed R11:5c3d5d7070f2: biology/vsearch: Update to 2.30.5.
Mar 11 2026, 1:42 PM

Mar 10 2026

jwb committed R11:faadb5898d64: biology/salmon: Unbreak: Relax libgff version requirement.
Mar 10 2026, 11:05 PM

Mar 7 2026

jwb committed R11:2f2d487a9f96: biology/libgff: Update to 2.0.1.
Mar 7 2026, 7:07 PM

Mar 5 2026

jwb committed R11:9c59e8acfec3: biology/py-macs3: Update to 3.0.4.
Mar 5 2026, 1:31 PM
jwb committed R11:746a50b935da: biology/atac-seq: Update to 0.3.0.
Mar 5 2026, 12:44 PM
jwb committed R11:cde38c495ee7: biology/bowtie2: Update to 2.5.5.
Mar 5 2026, 12:43 AM

Mar 4 2026

jwb committed R11:c05bc1293c21: biology/rna-seq: Update to 0.2.0.
Mar 4 2026, 11:39 PM
jwb committed R11:64ae45e8c91f: biology/kallisto: Update to 0.52.0,1.
Mar 4 2026, 11:32 PM
jwb committed R11:81d745d79908: sysutils/auto-admin: Update to 0.8.4.24.
Mar 4 2026, 2:26 PM

Feb 4 2026

jwb committed R11:6cef9ba6ad8f: sysutils/desktop-installer: Update to 1.1.1.31.
Feb 4 2026, 4:56 PM
jwb committed R11:1a92885dedaa: sysutils/auto-admin: Update to 0.8.4.22.
Feb 4 2026, 4:52 PM

Feb 1 2026

jwb committed R11:b4381c792276: biology/hisat2: Update to 2.2.2.
Feb 1 2026, 5:22 PM
jwb committed R11:b52b3f078fe9: devel/py-rich-click: Update to 1.9.7.
Feb 1 2026, 3:44 PM

Jan 31 2026

jwb committed R11:b03d74dfecbc: sysutils/auto-admin: Update to 0.8.4.14.
Jan 31 2026, 6:27 PM

Jan 30 2026

jwb committed R11:e826eb2ffb70: devel/py-rich-click: Update to 1.9.6.
Jan 30 2026, 5:49 PM

Jan 22 2026

jwb committed R11:e14df5e88aa2: biology/vsearch: Update to 2.30.4.
Jan 22 2026, 9:07 PM

Jan 14 2026

jwb committed R11:07cd81ad096d: biology/vsearch: Update to 2.30.3.
Jan 14 2026, 12:53 AM

Jan 11 2026

jwb committed R11:aff412a94985: biology/sra-tools: Unbreak with extra JDK present.
Jan 11 2026, 8:40 PM

Dec 21 2025

jwb committed R11:e8c5f0d0bdcf: sysutils/desktop-installer: Update to 1.1.1.13.
Dec 21 2025, 3:39 PM
jwb committed R11:9220277b3245: sysutils/auto-admin: Update to 0.8.4.6.
Dec 21 2025, 3:33 PM

Dec 20 2025

jwb committed R11:060b82b8c6a7: biology/vsearch: Add patch for FreeBSD 16.
Dec 20 2025, 4:30 PM

Dec 18 2025

jwb committed R11:be3bc42e2e6d: biology/vsearch: Update to 2.30.2.
Dec 18 2025, 7:14 PM
jwb committed R11:ab2ef91341ba: science/csvtk: Update to 0.36.0.
Dec 18 2025, 3:58 PM
jwb committed R11:6a98f17c690d: biology/biostar-tools: Update to 2.1.
Dec 18 2025, 2:40 PM
jwb committed R11:9b9deea48332: biology/R-cran-BiocManager: Update to 1.30.27.
Dec 18 2025, 12:25 PM

Dec 17 2025

jwb committed R11:0b9fcf87c4ad: science/orthanc-postgresql: Update to 10.0.
Dec 17 2025, 8:28 PM
jwb committed R11:0c9f38b3b81f: biology/sra-tools: Update to 3.3.0.
Dec 17 2025, 4:19 PM

Dec 16 2025

jwb committed R11:67021eded363: devel/libxtend: Update to 0.2.1.10.
Dec 16 2025, 12:08 PM

Dec 11 2025

jwb committed R11:23fef9d1fd65: sysutils/auto-admin: Update to 0.8.4.2.
Dec 11 2025, 7:20 PM

Dec 7 2025

jwb committed R11:cf682fa21f29: sysutils/auto-admin: Update to 0.8.4.
Dec 7 2025, 5:07 PM

Nov 28 2025

jwb committed R11:65a3f08310c6: science/orthanc-mysql: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:4559017c3eeb: science/orthanc-postgresql: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:f83215f2a1d5: science/orthanc-dicomweb: Bump orthanc version to 1.12.10.
Nov 28 2025, 2:26 PM
jwb committed R11:d9a91947b3c2: science/orthanc: Update to 1.12.10.
Nov 28 2025, 2:26 PM

Nov 26 2025

jwb committed R11:836e360c06bc: sysutils/diskimage-tools: Update to 0.3.1.5.
Nov 26 2025, 7:10 PM

Nov 13 2025

jwb committed R11:753fe08b6b51: math/rapid: DEPRECATED -> BROKEN.
Nov 13 2025, 12:47 PM

Oct 30 2025

jwb committed R11:c123af95436a: net/py-google-cloud-pubsub: Update to 2.32.0.
Oct 30 2025, 12:43 AM

Oct 29 2025

jwb committed R11:7448f577d89a: science/csvtk: Update to 0.35.0.
Oct 29 2025, 1:51 PM

Oct 27 2025

jwb committed R11:0bbd21d1998d: science/orthanc-postgresql: Update to 9.0.
Oct 27 2025, 5:12 PM
jwb committed R11:1e51eaa38294: science/orthanc-mysql: Update to 5.2.
Oct 27 2025, 5:07 PM
jwb committed R11:a61fa75a176d: science/orthanc-dicomweb: Update to 1.21.
Oct 27 2025, 4:58 PM